GAP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	CA	sing	1.47Å	1.50Å
N	H1	sing	1.01Å	1.02Å
N	H2A	sing	1.01Å	1.02Å
N	H3	sing	1.01Å	1.02Å
CA	C	sing	1.51Å	1.54Å
CA	HA1	sing	1.09Å	1.12Å
CA	HA2	sing	1.09Å	1.12Å
C	O	doub	1.21Å	1.26Å
C	O3A	sing	1.34Å	1.27Å
PA	O1A	doub	1.54Å	1.49Å
PA	O2A	sing	1.55Å	1.48Å
PA	O3A	sing	1.61Å	1.62Å
PA	O5'	sing	1.61Å	1.59Å
C5'	O5'	sing	1.43Å	1.42Å
C5'	C4'	sing	1.53Å	1.50Å
C5'	H5'1	sing	1.09Å	1.12Å
C5'	H5'2	sing	1.09Å	1.11Å
C4'	O4'	sing	1.44Å	1.44Å
C4'	C3'	sing	1.54Å	1.52Å
C4'	H4'	sing	1.09Å	1.11Å
O4'	C1'	sing	1.44Å	1.40Å
C3'	O3'	sing	1.43Å	1.42Å
C3'	C2'	sing	1.55Å	1.52Å
C3'	H3'	sing	1.09Å	1.12Å
O3'	HO'3	sing	0.97Å	0.95Å
C2'	O2'	sing	1.43Å	1.41Å
C2'	C1'	sing	1.55Å	1.53Å
C2'	H2'	sing	1.09Å	1.11Å
O2'	HO'2	sing	0.97Å	0.95Å
C1'	N9	sing	1.46Å	1.44Å
C1'	H1'	sing	1.09Å	1.11Å
N9	C8	sing	1.36Å	1.37Å	Aromatic
N9	C4	sing	1.37Å	1.36Å	Aromatic
C8	N7	doub	1.30Å	1.31Å	Aromatic
C8	H8	sing	1.08Å	1.10Å
N7	C5	sing	1.35Å	1.39Å	Aromatic
C5	C6	sing	1.41Å	1.41Å	Aromatic
C5	C4	doub	1.41Å	1.37Å	Aromatic
C6	N6	sing	1.38Å	1.33Å
C6	N1	doub	1.33Å	1.34Å	Aromatic
N6	H61	sing	0.97Å	1.02Å
N6	H62	sing	0.97Å	1.02Å
N1	C2	sing	1.32Å	1.34Å	Aromatic
C2	N3	doub	1.32Å	1.33Å	Aromatic
C2	H2	sing	1.08Å	1.10Å
N3	C4	sing	1.33Å	1.34Å	Aromatic

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CA	N	H1	117.5°	109.5°
CA	N	H2A	109.3°	109.5°
CA	N	H3	109.3°	109.5°
N	CA	C	117.5°	109.5°
N	CA	HA1	109.3°	109.5°
N	CA	HA2	109.3°	109.5°
H1	N	H2A	109.3°	109.5°
H1	N	H3	109.4°	109.4°
H2A	N	H3	100.9°	109.5°
C	CA	HA1	109.3°	109.4°
C	CA	HA2	109.3°	109.5°
CA	C	O	114.8°	120.0°
CA	C	O3A	118.7°	120.0°
HA1	CA	HA2	100.8°	109.5°
O	C	O3A	126.4°	120.0°
C	O3A	PA	121.1°	120.0°
O1A	PA	O2A	119.6°	109.5°
O1A	PA	O3A	106.3°	109.5°
O1A	PA	O5'	107.1°	109.4°
O2A	PA	O3A	109.6°	109.5°
O2A	PA	O5'	107.9°	109.5°
O3A	PA	O5'	105.5°	109.4°
PA	O5'	C5'	120.9°	106.8°
O5'	C5'	C4'	109.9°	109.4°
O5'	C5'	H5'1	112.0°	109.5°
O5'	C5'	H5'2	112.0°	109.5°
C4'	C5'	H5'1	112.1°	109.4°
C4'	C5'	H5'2	112.1°	109.5°
C5'	C4'	O4'	105.8°	110.4°
C5'	C4'	C3'	116.6°	110.4°
C5'	C4'	H4'	105.9°	110.3°
H5'1	C5'	H5'2	98.3°	109.5°
O4'	C4'	C3'	105.2°	104.8°
O4'	C4'	H4'	117.2°	110.4°
C4'	O4'	C1'	109.5°	105.3°
C3'	C4'	H4'	106.5°	110.4°
C4'	C3'	O3'	109.9°	110.5°
C4'	C3'	C2'	102.7°	104.1°
C4'	C3'	H3'	113.2°	110.5°
O4'	C1'	C2'	108.7°	104.9°
O4'	C1'	N9	107.3°	110.4°
O4'	C1'	H1'	113.8°	110.3°
O3'	C3'	C2'	108.5°	110.5°
O3'	C3'	H3'	107.9°	110.5°
C3'	O3'	HO'3	109.9°	106.8°
C2'	C3'	H3'	114.6°	110.5°
C3'	C2'	O2'	112.4°	110.5°
C3'	C2'	C1'	101.4°	104.0°
C3'	C2'	H2'	113.0°	110.5°
O2'	C2'	C1'	109.8°	110.8°
O2'	C2'	H2'	105.1°	110.5°
C2'	O2'	HO'2	112.4°	106.8°
C1'	C2'	H2'	115.5°	110.4°
C2'	C1'	N9	115.7°	110.4°
C2'	C1'	H1'	105.0°	110.4°
N9	C1'	H1'	106.5°	110.3°
C1'	N9	C8	128.6°	126.3°
C1'	N9	C4	125.6°	126.3°
C8	N9	C4	105.8°	107.4°
N9	C8	N7	113.6°	110.0°
N9	C8	H8	125.1°	125.0°
N9	C4	C5	106.6°	106.0°
N9	C4	N3	126.5°	134.9°
N7	C8	H8	121.3°	125.0°
C8	N7	C5	103.8°	109.4°
N7	C5	C6	132.5°	134.7°
N7	C5	C4	110.2°	107.1°
C6	C5	C4	117.2°	118.2°
C5	C6	N6	124.2°	120.8°
C5	C6	N1	117.9°	118.4°
C5	C4	N3	126.9°	119.0°
N6	C6	N1	118.0°	120.8°
C6	N6	H61	124.2°	120.0°
C6	N6	H62	107.0°	120.0°
C6	N1	C2	117.9°	121.2°
H61	N6	H62	107.0°	120.0°
N1	C2	N3	130.0°	122.5°
N1	C2	H2	115.4°	118.8°
N3	C2	H2	114.6°	118.7°
C2	N3	C4	110.1°	120.7°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CA	N	H1	H2A	125.2°	120.1°
CA	N	H1	H3	125.2°	120.0°
CA	N	H2A	H3	115.0°	120.0°
N	CA	C	HA1	125.3°	120.0°
N	CA	C	HA2	125.3°	120.0°
N	CA	HA1	HA2	115.1°	120.0°
N	CA	C	O	36.8°	0.0°
N	CA	C	O3A	143.7°	180.0°
H1	N	H2A	H3	115.2°	119.9°
H1	N	CA	C	180.0°	180.0°
H1	N	CA	HA1	54.7°	60.0°
H1	N	CA	HA2	54.7°	60.1°
H2A	N	CA	C	54.8°	60.0°
H2A	N	CA	HA1	70.5°	180.0°
H2A	N	CA	HA2	179.9°	60.0°
H3	N	CA	C	54.7°	60.0°
H3	N	CA	HA1	180.0°	59.9°
H3	N	CA	HA2	70.5°	180.0°
C	CA	HA1	HA2	115.1°	120.0°
CA	C	O	O3A	179.4°	180.0°
CA	C	O3A	PA	179.8°	180.0°
HA1	CA	C	O	88.5°	120.0°
HA1	CA	C	O3A	91.0°	60.0°
HA2	CA	C	O	162.1°	120.0°
HA2	CA	C	O3A	18.5°	60.0°
O	C	O3A	PA	0.4°	0.0°
C	O3A	PA	O1A	155.5°	65.0°
C	O3A	PA	O2A	24.9°	55.0°
C	O3A	PA	O5'	91.0°	175.0°
O1A	PA	O2A	O3A	123.0°	120.1°
O1A	PA	O2A	O5'	122.6°	120.0°
O1A	PA	O3A	O5'	113.5°	120.0°
O1A	PA	O5'	C5'	79.8°	65.0°
O2A	PA	O3A	O5'	115.9°	120.0°
O2A	PA	O5'	C5'	150.3°	55.0°
O3A	PA	O5'	C5'	33.2°	175.0°
PA	O5'	C5'	C4'	158.8°	180.0°
PA	O5'	C5'	H5'1	33.5°	60.1°
PA	O5'	C5'	H5'2	75.9°	60.0°
O5'	C5'	C4'	H5'1	125.2°	120.0°
O5'	C5'	C4'	H5'2	125.3°	120.0°
O5'	C5'	H5'1	H5'2	117.9°	120.1°
O5'	C5'	C4'	O4'	56.1°	66.5°
O5'	C5'	C4'	C3'	60.5°	178.1°
O5'	C5'	C4'	H4'	178.8°	55.8°
C4'	C5'	H5'1	H5'2	118.0°	120.0°
C5'	C4'	O4'	C3'	124.1°	118.9°
C5'	C4'	O4'	H4'	117.8°	122.2°
C5'	C4'	C3'	H4'	117.9°	122.3°
C5'	C4'	O4'	C1'	144.0°	159.4°
C5'	C4'	C3'	O3'	94.2°	98.4°
C5'	C4'	C3'	C2'	150.5°	142.9°
C5'	C4'	C3'	H3'	26.4°	24.3°
H5'1	C5'	C4'	O4'	178.7°	173.5°
H5'1	C5'	C4'	C3'	64.7°	58.1°
H5'1	C5'	C4'	H4'	53.6°	64.2°
H5'2	C5'	C4'	O4'	69.2°	53.5°
H5'2	C5'	C4'	C3'	174.2°	61.9°
H5'2	C5'	C4'	H4'	55.9°	175.8°
O4'	C4'	C3'	H4'	125.1°	118.9°
O4'	C4'	C3'	O3'	148.8°	142.8°
O4'	C4'	C3'	C2'	33.6°	24.1°
O4'	C4'	C3'	H3'	90.5°	94.6°
C4'	O4'	C1'	C2'	2.0°	40.5°
C4'	O4'	C1'	N9	123.8°	159.4°
C4'	O4'	C1'	H1'	118.6°	78.4°
C3'	C4'	O4'	C1'	19.9°	40.5°
C4'	C3'	O3'	C2'	111.5°	114.7°
C4'	C3'	O3'	H3'	123.9°	122.6°
C4'	C3'	C2'	H3'	123.2°	118.6°
C4'	C3'	O3'	HO'3	180.0°	179.9°
C4'	C3'	C2'	O2'	83.8°	118.8°
C4'	C3'	C2'	C1'	33.3°	0.1°
C4'	C3'	C2'	H2'	157.5°	118.6°
H4'	C4'	O4'	C1'	98.2°	78.3°
H4'	C4'	C3'	O3'	23.7°	23.9°
H4'	C4'	C3'	C2'	91.5°	94.8°
H4'	C4'	C3'	H3'	144.4°	146.5°
O4'	C1'	C2'	C3'	22.8°	23.9°
O4'	C1'	C2'	O2'	96.2°	142.6°
O4'	C1'	C2'	N9	120.8°	118.9°
O4'	C1'	C2'	H1'	122.1°	118.9°
O4'	C1'	C2'	H2'	145.2°	94.7°
O4'	C1'	N9	H1'	122.2°	122.2°
O4'	C1'	N9	C8	25.9°	22.0°
O4'	C1'	N9	C4	151.6°	157.9°
O3'	C3'	C2'	H3'	120.5°	122.7°
O3'	C3'	C2'	O2'	32.4°	0.1°
O3'	C3'	C2'	C1'	149.6°	118.8°
O3'	C3'	C2'	H2'	86.3°	122.7°
C2'	C3'	O3'	HO'3	68.5°	65.3°
C3'	C2'	O2'	C1'	112.0°	114.7°
C3'	C2'	O2'	H2'	123.2°	122.7°
C3'	C2'	C1'	H2'	122.5°	118.6°
C3'	C2'	O2'	HO'2	180.0°	61.5°
C3'	C2'	C1'	N9	98.0°	142.8°
C3'	C2'	C1'	H1'	144.9°	95.0°
H3'	C3'	O3'	HO'3	56.1°	57.4°
H3'	C3'	C2'	O2'	153.0°	122.6°
H3'	C3'	C2'	C1'	89.9°	118.5°
H3'	C3'	C2'	H2'	34.3°	0.0°
O2'	C2'	C1'	H2'	118.5°	122.7°
O2'	C2'	C1'	N9	143.0°	98.5°
O2'	C2'	C1'	H1'	25.9°	23.7°
C1'	C2'	O2'	HO'2	68.0°	176.2°
C2'	C1'	N9	H1'	116.3°	122.3°
C2'	C1'	N9	C8	95.6°	93.5°
C2'	C1'	N9	C4	86.9°	86.5°
H2'	C2'	O2'	HO'2	56.7°	61.1°
H2'	C2'	C1'	N9	24.5°	24.2°
H2'	C2'	C1'	H1'	92.7°	146.4°
C1'	N9	C8	C4	177.9°	180.0°
C1'	N9	C8	N7	176.5°	180.0°
C1'	N9	C8	H8	3.5°	0.0°
C1'	N9	C4	C5	176.3°	179.7°
C1'	N9	C4	N3	1.9°	0.0°
H1'	C1'	N9	C8	148.1°	144.2°
H1'	C1'	N9	C4	29.4°	35.7°
N9	C8	N7	H8	180.0°	180.0°
N9	C8	N7	C5	0.5°	0.2°
C8	N9	C4	C5	1.7°	0.3°
C8	N9	C4	N3	179.8°	180.0°
C4	N9	C8	N7	1.4°	0.0°
C4	N9	C8	H8	178.6°	180.0°
N9	C4	C5	N7	1.5°	0.4°
N9	C4	C5	C6	177.8°	179.6°
N9	C4	C5	N3	178.2°	179.8°
N9	C4	N3	C2	177.1°	180.0°
C8	N7	C5	C6	178.5°	179.4°
C8	N7	C5	C4	0.6°	0.4°
H8	C8	N7	C5	179.5°	179.7°
N7	C5	C6	C4	179.1°	178.9°
N7	C5	C6	N6	1.4°	0.8°
N7	C5	C6	N1	178.7°	179.5°
N7	C5	C4	N3	179.6°	179.8°
C5	C6	N6	N1	179.9°	179.7°
C5	C6	N6	H61	180.0°	179.7°
C5	C6	N6	H62	54.7°	0.6°
C5	C6	N1	C2	0.6°	0.3°
C6	C5	C4	N3	0.4°	0.6°
C4	C5	C6	N6	179.6°	179.7°
C4	C5	C6	N1	0.3°	0.6°
C5	C4	N3	C2	0.7°	0.3°
C6	N6	H61	H62	125.2°	179.7°
N6	C6	N1	C2	179.3°	180.0°
N1	C6	N6	H61	0.1°	0.0°
N1	C6	N6	H62	125.2°	179.7°
C6	N1	C2	N3	0.3°	0.0°
C6	N1	C2	H2	179.7°	180.0°
N1	C2	N3	H2	180.0°	180.0°
N1	C2	N3	C4	0.3°	0.0°
H2	C2	N3	C4	179.7°	180.0°

Definition date:	1999-07-08
Last modified:	2011-06-04
Release status:	REL
Processing site:	EBI
Derived from:	1GGM