G8D
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O6 | C6 | doub | 1.22Å | 1.28Å | |
| N1 | C6 | sing | 1.35Å | 1.35Å | |
| N1 | C2 | sing | 1.36Å | 1.37Å | |
| N2 | C2 | sing | 1.37Å | 1.35Å | |
| C6 | C5 | sing | 1.40Å | 1.50Å | |
| C2 | N3 | doub | 1.31Å | 1.37Å | |
| C5 | N7 | sing | 1.40Å | 1.37Å | |
| C5 | C4 | doub | 1.39Å | 1.50Å | |
| N3 | C4 | sing | 1.34Å | 1.37Å | |
| N7 | C8 | sing | 1.35Å | 1.35Å | |
| C4 | N9 | sing | 1.38Å | 1.35Å | |
| O2' | C2' | sing | 1.43Å | 1.45Å | |
| C8 | N9 | sing | 1.35Å | 1.36Å | |
| C8 | O8 | doub | 1.22Å | 1.47Å | |
| N9 | C1' | sing | 1.46Å | 1.49Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| O1A | PA | doub | 1.48Å | 1.50Å | |
| C1' | O4' | sing | 1.44Å | 1.43Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C4' | sing | 1.54Å | 1.53Å | |
| PA | O5' | sing | 1.61Å | 1.64Å | |
| PA | O2A | sing | 1.61Å | 1.53Å | |
| PA | O3A | sing | 1.61Å | 1.65Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| O4' | C4' | sing | 1.44Å | 1.43Å | |
| O1B | PB | doub | 1.48Å | 1.51Å | |
| C4' | C5' | sing | 1.53Å | 1.50Å | |
| O3A | PB | sing | 1.61Å | 1.64Å | |
| O3B | PB | sing | 1.61Å | 1.52Å | |
| PB | O2B | sing | 1.61Å | 1.53Å | |
| O3B | H1 | sing | 0.97Å | 0.95Å | |
| O2B | H2 | sing | 0.97Å | 0.95Å | |
| O2A | H3 | sing | 0.97Å | 0.95Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C5' | H5 | sing | 1.09Å | 1.10Å | |
| C4' | H6 | sing | 1.09Å | 1.10Å | |
| C3' | H7 | sing | 1.09Å | 1.10Å | |
| O3' | H8 | sing | 0.97Å | 0.95Å | |
| C2' | H9 | sing | 1.09Å | 1.10Å | |
| O2' | H10 | sing | 0.97Å | 0.95Å | |
| C1' | H11 | sing | 1.09Å | 1.10Å | |
| N2 | H12 | sing | 0.97Å | 1.00Å | |
| N2 | H13 | sing | 0.97Å | 1.00Å | |
| N1 | H14 | sing | 0.97Å | 1.00Å | |
| N7 | H15 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O6 | C6 | N1 | 119.5° | 120.7° |
| O6 | C6 | C5 | 124.1° | 120.8° |
| C6 | N1 | C2 | 123.6° | 120.1° |
| N1 | C6 | C5 | 116.4° | 118.5° |
| C6 | N1 | H14 | 118.2° | 120.0° |
| N1 | C2 | N2 | 113.6° | 119.1° |
| N1 | C2 | N3 | 124.3° | 121.7° |
| C2 | N1 | H14 | 118.2° | 119.9° |
| N2 | C2 | N3 | 122.1° | 119.2° |
| C2 | N2 | H12 | 120.0° | 120.0° |
| C2 | N2 | H13 | 120.0° | 120.0° |
| C6 | C5 | N7 | 134.0° | 134.0° |
| C6 | C5 | C4 | 117.0° | 119.0° |
| C2 | N3 | C4 | 118.0° | 121.1° |
| N7 | C5 | C4 | 109.0° | 107.0° |
| C5 | N7 | C8 | 103.2° | 107.8° |
| C5 | N7 | H15 | 128.4° | 126.1° |
| C5 | C4 | N3 | 120.6° | 119.6° |
| C5 | C4 | N9 | 105.1° | 107.0° |
| N3 | C4 | N9 | 134.3° | 133.5° |
| N7 | C8 | N9 | 116.3° | 109.5° |
| N7 | C8 | O8 | 119.8° | 125.3° |
| C8 | N7 | H15 | 128.4° | 126.0° |
| C4 | N9 | C8 | 106.5° | 108.7° |
| C4 | N9 | C1' | 127.1° | 125.6° |
| O2' | C2' | C1' | 113.3° | 110.9° |
| O2' | C2' | C3' | 112.1° | 111.0° |
| O2' | C2' | H9 | 110.5° | 110.9° |
| C2' | O2' | H10 | 109.5° | 114.0° |
| N9 | C8 | O8 | 123.9° | 125.3° |
| C8 | N9 | C1' | 126.4° | 125.6° |
| N9 | C1' | C2' | 116.5° | 110.6° |
| N9 | C1' | O4' | 109.0° | 110.7° |
| N9 | C1' | H11 | 108.8° | 110.7° |
| C1' | C2' | C3' | 101.5° | 102.1° |
| C2' | C1' | O4' | 104.6° | 103.5° |
| C1' | C2' | H9 | 109.4° | 110.9° |
| C2' | C1' | H11 | 108.2° | 110.6° |
| C2' | C3' | O3' | 107.7° | 110.5° |
| C2' | C3' | C4' | 106.6° | 104.2° |
| C2' | C3' | H7 | 110.5° | 110.6° |
| C3' | C2' | H9 | 109.6° | 110.9° |
| O1A | PA | O5' | 104.0° | 109.5° |
| O1A | PA | O2A | 118.8° | 109.4° |
| O1A | PA | O3A | 115.8° | 109.5° |
| C1' | O4' | C4' | 109.3° | 107.0° |
| O4' | C1' | H11 | 109.6° | 110.6° |
| O3' | C3' | C4' | 109.2° | 110.5° |
| O3' | C3' | H7 | 112.1° | 110.4° |
| C3' | O3' | H8 | 109.5° | 114.0° |
| C3' | C4' | O4' | 105.4° | 107.4° |
| C3' | C4' | C5' | 112.4° | 109.9° |
| C3' | C4' | H6 | 110.0° | 109.9° |
| C4' | C3' | H7 | 110.4° | 110.5° |
| O5' | PA | O2A | 103.7° | 109.5° |
| O5' | PA | O3A | 97.6° | 109.5° |
| PA | O5' | C5' | 121.9° | 123.0° |
| O2A | PA | O3A | 112.9° | 109.5° |
| PA | O2A | H3 | 109.5° | 114.0° |
| PA | O3A | PB | 132.0° | 134.0° |
| O5' | C5' | C4' | 104.4° | 109.5° |
| O5' | C5' | H4 | 110.8° | 109.5° |
| O5' | C5' | H5 | 110.7° | 109.5° |
| O4' | C4' | C5' | 107.3° | 109.9° |
| O4' | C4' | H6 | 111.4° | 109.8° |
| O1B | PB | O3A | 109.7° | 109.5° |
| O1B | PB | O3B | 111.9° | 109.5° |
| O1B | PB | O2B | 114.8° | 109.5° |
| C4' | C5' | H4 | 110.7° | 109.5° |
| C4' | C5' | H5 | 110.8° | 109.4° |
| C5' | C4' | H6 | 110.4° | 109.9° |
| O3A | PB | O3B | 104.8° | 109.5° |
| O3A | PB | O2B | 99.2° | 109.4° |
| O3B | PB | O2B | 115.1° | 109.5° |
| PB | O3B | H1 | 109.5° | 114.0° |
| PB | O2B | H2 | 109.5° | 113.9° |
| H4 | C5' | H5 | 109.5° | 109.5° |
| H12 | N2 | H13 | 120.0° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O6 | C6 | N1 | C5 | 179.9° | 179.9° |
| O6 | C6 | N1 | C2 | 179.7° | 180.0° |
| O6 | C6 | C5 | N7 | 0.3° | 0.2° |
| O6 | C6 | C5 | C4 | 179.5° | 179.9° |
| O6 | C6 | N1 | H14 | 0.3° | 0.1° |
| C6 | N1 | C2 | H14 | 180.0° | 180.0° |
| C6 | N1 | C2 | N2 | 179.7° | 180.0° |
| C6 | N1 | C2 | N3 | 0.3° | 0.0° |
| N1 | C6 | C5 | N7 | 179.5° | 179.8° |
| N1 | C6 | C5 | C4 | 0.3° | 0.0° |
| N1 | C2 | N2 | N3 | 179.4° | 180.0° |
| C2 | N1 | C6 | C5 | 0.2° | 0.0° |
| N1 | C2 | N3 | C4 | 0.5° | 0.0° |
| N1 | C2 | N2 | H12 | 179.4° | 179.9° |
| N1 | C2 | N2 | H13 | 0.6° | 0.1° |
| N2 | C2 | N3 | C4 | 179.8° | 179.9° |
| C2 | N2 | H12 | H13 | 180.0° | 179.8° |
| N2 | C2 | N1 | H14 | 0.3° | 0.1° |
| C6 | C5 | N7 | C4 | 179.2° | 179.9° |
| C6 | C5 | C4 | N3 | 0.6° | 0.0° |
| C6 | C5 | N7 | C8 | 179.8° | 179.9° |
| C6 | C5 | C4 | N9 | 179.6° | 180.0° |
| C5 | C6 | N1 | H14 | 179.8° | 180.0° |
| C6 | C5 | N7 | H15 | 0.2° | 0.0° |
| C2 | N3 | C4 | C5 | 0.7° | 0.0° |
| C2 | N3 | C4 | N9 | 179.6° | 180.0° |
| N3 | C2 | N2 | H12 | 0.0° | 0.1° |
| N3 | C2 | N2 | H13 | 180.0° | 179.9° |
| N3 | C2 | N1 | H14 | 179.7° | 180.0° |
| N7 | C5 | C4 | N3 | 180.0° | 179.9° |
| C5 | N7 | C8 | H15 | 180.0° | 179.9° |
| N7 | C5 | C4 | N9 | 0.2° | 0.1° |
| C5 | N7 | C8 | N9 | 0.8° | 0.1° |
| C5 | N7 | C8 | O8 | 179.4° | 179.8° |
| C5 | C4 | N3 | N9 | 179.8° | 180.0° |
| C4 | C5 | N7 | C8 | 0.5° | 0.0° |
| C5 | C4 | N9 | C8 | 0.3° | 0.2° |
| C5 | C4 | N9 | C1' | 179.5° | 180.0° |
| C4 | C5 | N7 | H15 | 179.5° | 179.9° |
| N3 | C4 | N9 | C8 | 179.6° | 179.8° |
| N3 | C4 | N9 | C1' | 0.3° | 0.0° |
| N7 | C8 | N9 | C4 | 0.7° | 0.2° |
| N7 | C8 | N9 | O8 | 179.8° | 179.9° |
| N7 | C8 | N9 | C1' | 179.9° | 180.0° |
| C4 | N9 | C8 | C1' | 179.2° | 179.8° |
| C4 | N9 | C8 | O8 | 179.5° | 179.7° |
| C4 | N9 | C1' | C2' | 29.9° | 114.7° |
| C4 | N9 | C1' | O4' | 88.1° | 131.2° |
| C4 | N9 | C1' | H11 | 152.5° | 8.2° |
| O2' | C2' | C1' | N9 | 85.1° | 86.2° |
| O2' | C2' | C1' | C3' | 120.3° | 118.3° |
| O2' | C2' | C1' | H9 | 123.9° | 123.6° |
| O2' | C2' | C3' | H9 | 123.1° | 123.7° |
| O2' | C2' | C1' | O4' | 154.5° | 155.2° |
| O2' | C2' | C3' | O3' | 26.3° | 20.4° |
| O2' | C2' | C3' | C4' | 143.5° | 139.0° |
| O2' | C2' | C3' | H7 | 96.4° | 102.2° |
| O2' | C2' | C1' | H11 | 37.7° | 36.8° |
| C8 | N9 | C1' | C2' | 151.0° | 65.0° |
| C8 | N9 | C1' | O4' | 91.0° | 49.1° |
| C8 | N9 | C1' | H11 | 28.4° | 172.0° |
| N9 | C8 | N7 | H15 | 179.2° | 180.0° |
| O8 | C8 | N9 | C1' | 0.3° | 0.1° |
| O8 | C8 | N7 | H15 | 0.6° | 0.1° |
| N9 | C1' | C2' | O4' | 120.4° | 118.6° |
| N9 | C1' | C2' | H11 | 122.8° | 123.0° |
| N9 | C1' | C2' | C3' | 154.5° | 155.5° |
| N9 | C1' | O4' | H11 | 118.9° | 123.0° |
| N9 | C1' | O4' | C4' | 160.0° | 158.4° |
| N9 | C1' | C2' | H9 | 38.8° | 37.4° |
| C1' | C2' | C3' | H9 | 115.6° | 118.1° |
| C2' | C1' | O4' | H11 | 115.9° | 118.4° |
| C1' | C2' | C3' | O3' | 94.9° | 97.8° |
| C1' | C2' | C3' | C4' | 22.2° | 20.9° |
| C2' | C1' | O4' | C4' | 34.7° | 39.9° |
| C1' | C2' | C3' | H7 | 142.3° | 139.6° |
| C1' | C2' | O2' | H10 | 180.0° | 180.0° |
| C3' | C2' | C1' | O4' | 34.2° | 36.9° |
| C2' | C3' | O3' | C4' | 115.5° | 114.8° |
| C2' | C3' | O3' | H7 | 121.8° | 122.7° |
| C2' | C3' | C4' | H7 | 120.1° | 118.8° |
| C2' | C3' | C4' | O4' | 2.9° | 2.0° |
| C2' | C3' | C4' | C5' | 113.6° | 121.4° |
| C2' | C3' | C4' | H6 | 123.0° | 117.5° |
| C2' | C3' | O3' | H8 | 180.0° | 65.2° |
| C3' | C2' | O2' | H10 | 65.8° | 67.3° |
| C3' | C2' | C1' | H11 | 82.6° | 81.5° |
| O1A | PA | O5' | O2A | 124.9° | 120.0° |
| O1A | PA | O5' | O3A | 119.1° | 120.0° |
| O1A | PA | O2A | O3A | 140.6° | 120.0° |
| O1A | PA | O5' | C5' | 173.2° | 55.0° |
| O1A | PA | O3A | PB | 23.0° | 45.0° |
| O1A | PA | O2A | H3 | 0.0° | 180.0° |
| C1' | O4' | C4' | C3' | 19.9° | 26.4° |
| C1' | O4' | C4' | C5' | 139.8° | 145.9° |
| C1' | O4' | C4' | H6 | 99.3° | 93.1° |
| O4' | C1' | C2' | H9 | 81.6° | 81.2° |
| O3' | C3' | C4' | H7 | 123.7° | 122.5° |
| O3' | C3' | C4' | O4' | 113.2° | 120.6° |
| O3' | C3' | C4' | C5' | 130.3° | 119.9° |
| O3' | C3' | C4' | H6 | 6.9° | 1.1° |
| O3' | C3' | C2' | H9 | 149.5° | 144.1° |
| C3' | C4' | C5' | O5' | 49.0° | 175.3° |
| C3' | C4' | O4' | C5' | 119.9° | 119.5° |
| C3' | C4' | O4' | H6 | 119.2° | 119.5° |
| C3' | C4' | C5' | H6 | 123.1° | 121.0° |
| C3' | C4' | C5' | H4 | 70.2° | 64.7° |
| C3' | C4' | C5' | H5 | 168.2° | 55.3° |
| C4' | C3' | O3' | H8 | 64.5° | 180.0° |
| C4' | C3' | C2' | H9 | 93.4° | 97.3° |
| O5' | PA | O2A | O3A | 104.6° | 120.0° |
| PA | O5' | C5' | C4' | 151.6° | 180.0° |
| O5' | PA | O3A | PB | 132.6° | 165.0° |
| O5' | PA | O2A | H3 | 114.8° | 60.0° |
| PA | O5' | C5' | H4 | 89.2° | 60.0° |
| PA | O5' | C5' | H5 | 32.4° | 60.0° |
| O2A | PA | O5' | C5' | 61.9° | 65.0° |
| O2A | PA | O3A | PB | 118.9° | 75.0° |
| O3A | PA | O5' | C5' | 54.1° | 175.0° |
| PA | O3A | PB | O1B | 49.0° | 45.1° |
| PA | O3A | PB | O3B | 71.3° | 75.0° |
| PA | O3A | PB | O2B | 169.6° | 165.0° |
| O3A | PA | O2A | H3 | 140.6° | 60.0° |
| O5' | C5' | C4' | O4' | 66.3° | 66.7° |
| O5' | C5' | C4' | H4 | 119.2° | 120.0° |
| O5' | C5' | C4' | H5 | 119.1° | 120.0° |
| O5' | C5' | H4 | H5 | 122.3° | 120.0° |
| O5' | C5' | C4' | H6 | 172.2° | 54.2° |
| O4' | C4' | C5' | H6 | 121.5° | 120.9° |
| O4' | C4' | C5' | H4 | 174.5° | 53.3° |
| O4' | C4' | C5' | H5 | 52.8° | 173.3° |
| O4' | C4' | C3' | H7 | 123.0° | 116.9° |
| C4' | O4' | C1' | H11 | 81.1° | 78.5° |
| O1B | PB | O3A | O3B | 120.3° | 120.0° |
| O1B | PB | O3A | O2B | 120.6° | 120.0° |
| O1B | PB | O3B | O2B | 133.4° | 120.0° |
| O1B | PB | O3B | H1 | 0.0° | 179.9° |
| O1B | PB | O2B | H2 | 0.0° | 60.0° |
| C4' | C5' | H4 | H5 | 122.4° | 120.0° |
| C5' | C4' | C3' | H7 | 6.5° | 2.6° |
| O3A | PB | O3B | O2B | 107.8° | 120.0° |
| O3A | PB | O3B | H1 | 118.8° | 59.9° |
| O3A | PB | O2B | H2 | 116.8° | 180.0° |
| O3B | PB | O2B | H2 | 132.0° | 60.0° |
| O2B | PB | O3B | H1 | 133.4° | 60.1° |
| H4 | C5' | C4' | H6 | 52.9° | 174.3° |
| H5 | C5' | C4' | H6 | 68.7° | 65.7° |
| H6 | C4' | C3' | H7 | 116.8° | 123.6° |
| H7 | C3' | O3' | H8 | 58.2° | 57.4° |
| H7 | C3' | C2' | H9 | 26.7° | 21.5° |
| H9 | C2' | O2' | H10 | 56.8° | 56.4° |
| H9 | C2' | C1' | H11 | 161.6° | 160.4° |
