English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

G7J

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O2	C6	doub	1.22Å	1.22Å
C7	C6	sing	1.40Å	1.49Å
C7	C8	doub	1.37Å	1.35Å
C6	C5	sing	1.46Å	1.51Å
N1	C2	sing	1.47Å	1.48Å
N1	C8	sing	1.38Å	1.40Å
C2	C3	sing	1.51Å	1.52Å
C8	C9	sing	1.47Å	1.47Å
C5	O1	sing	1.36Å	1.35Å
C5	C4	doub	1.35Å	1.34Å
C9	C4	sing	1.47Å	1.44Å
C9	C3	doub	1.36Å	1.35Å
N1	HN1	sing	0.97Å	1.00Å
C2	H2	sing	1.09Å	1.10Å
C2	H1	sing	1.09Å	1.10Å
C3	H3	sing	1.08Å	1.08Å
C4	H4	sing	1.08Å	1.08Å
C7	H7	sing	1.08Å	1.08Å
O1	H1O	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O2	C6	C7	123.1°	119.6°
O2	C6	C5	121.3°	119.5°
C6	C7	C8	120.7°	120.7°
C7	C6	C5	115.6°	120.9°
C6	C7	H7	119.6°	119.6°
C7	C8	N1	134.2°	131.0°
C7	C8	C9	122.6°	119.6°
C8	C7	H7	119.7°	119.7°
C6	C5	O1	116.1°	119.9°
C6	C5	C4	121.1°	120.2°
C2	N1	C8	110.7°	107.5°
N1	C2	C3	98.1°	106.3°
C2	N1	HN1	109.2°	126.2°
N1	C2	H2	112.2°	110.1°
N1	C2	H1	112.2°	110.1°
N1	C8	C9	103.1°	109.4°
C8	N1	HN1	109.1°	126.2°
C2	C3	C9	107.0°	107.4°
C3	C2	H2	112.2°	110.1°
C3	C2	H1	112.3°	110.1°
C2	C3	H3	126.5°	126.4°
C8	C9	C4	116.7°	119.2°
C8	C9	C3	110.6°	109.5°
O1	C5	C4	122.8°	119.9°
C5	O1	H1O	109.5°	114.0°
C5	C4	C9	123.2°	119.4°
C5	C4	H4	118.4°	120.3°
C4	C9	C3	132.7°	131.3°
C9	C4	H4	118.4°	120.3°
C9	C3	H3	126.5°	126.3°
H2	C2	H1	109.4°	110.1°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O2	C6	C7	C5	179.8°	180.0°
O2	C6	C7	C8	179.5°	180.0°
O2	C6	C5	O1	0.2°	0.0°
O2	C6	C5	C4	179.7°	180.0°
O2	C6	C7	H7	0.5°	0.1°
C6	C7	C8	H7	180.0°	179.9°
C6	C7	C8	N1	178.9°	180.0°
C6	C7	C8	C9	1.0°	0.0°
C7	C6	C5	O1	180.0°	180.0°
C7	C6	C5	C4	0.1°	0.0°
C8	C7	C6	C5	0.3°	0.0°
C7	C8	N1	C2	157.7°	180.0°
C7	C8	N1	C9	178.1°	180.0°
C7	C8	C9	C4	1.4°	0.0°
C7	C8	C9	C3	179.2°	180.0°
C7	C8	N1	HN1	37.6°	0.3°
C6	C5	O1	C4	179.9°	180.0°
C6	C5	C4	C9	0.6°	0.0°
C6	C5	C4	H4	179.4°	180.0°
C5	C6	C7	H7	179.7°	179.9°
C6	C5	O1	H1O	0.1°	0.1°
C2	N1	C8	HN1	120.2°	179.7°
N1	C2	C3	H2	118.1°	119.2°
N1	C2	C3	H1	118.1°	119.2°
C2	N1	C8	C9	20.4°	0.0°
N1	C2	C3	C9	30.4°	0.0°
N1	C2	H2	H1	125.3°	121.6°
N1	C2	C3	H3	149.7°	179.9°
C8	N1	C2	C3	31.1°	0.0°
N1	C8	C9	C4	179.9°	180.0°
N1	C8	C9	C3	0.8°	0.0°
C8	N1	C2	H2	149.2°	119.2°
C8	N1	C2	H1	87.0°	119.2°
N1	C8	C7	H7	1.1°	0.1°
C2	C3	C9	C8	20.6°	0.0°
C2	C3	C9	C4	160.2°	180.0°
C2	C3	C9	H3	180.0°	179.9°
C3	C2	N1	HN1	151.2°	179.7°
C3	C2	H2	H1	125.3°	121.5°
C8	C9	C4	C5	1.2°	0.0°
C8	C9	C4	C3	179.2°	180.0°
C9	C8	N1	HN1	140.6°	179.7°
C8	C9	C3	H3	159.4°	179.9°
C8	C9	C4	H4	178.8°	180.0°
C9	C8	C7	H7	179.0°	179.9°
O1	C5	C4	C9	179.5°	180.0°
O1	C5	C4	H4	0.5°	0.0°
C5	C4	C9	H4	180.0°	180.0°
C5	C4	C9	C3	179.6°	180.0°
C4	C5	O1	H1O	179.9°	179.9°
C4	C9	C3	H3	19.8°	0.1°
C9	C3	C2	H2	148.5°	119.2°
C9	C3	C2	H1	87.7°	119.2°
C3	C9	C4	H4	0.4°	0.0°
HN1	N1	C2	H2	90.7°	61.1°
HN1	N1	C2	H1	33.1°	60.6°
H2	C2	C3	H3	31.5°	60.7°
H1	C2	C3	H3	92.2°	60.9°

249697

PDB entries from 2026-02-25

PDB statistics

PDBj update info

Contact PDBj

numon