G5Q
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OD2 | CG | doub | 1.21Å | 1.26Å | |
| CG | OD1 | sing | 1.34Å | 1.25Å | |
| CG | CD | sing | 1.51Å | 1.53Å | |
| CD | CA | sing | 1.53Å | 1.53Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| O2' | C2' | sing | 1.43Å | 1.42Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C5' | O5' | sing | 1.43Å | 1.45Å | |
| CA | N | sing | 1.47Å | 1.48Å | |
| CA | C | sing | 1.51Å | 1.53Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C2' | C1' | sing | 1.55Å | 1.54Å | |
| C | N3S | sing | 1.35Å | 1.42Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C1' | N1 | sing | 1.46Å | 1.48Å | |
| N3S | S | sing | 1.66Å | 1.60Å | |
| O5' | S | sing | 1.52Å | 1.59Å | |
| O1S | S | doub | 1.42Å | 1.42Å | |
| O2 | C2 | doub | 1.22Å | 1.22Å | |
| S | O2S | doub | 1.42Å | 1.42Å | |
| N1 | C2 | sing | 1.35Å | 1.38Å | |
| N1 | C6 | sing | 1.37Å | 1.37Å | |
| C2 | N3 | sing | 1.35Å | 1.39Å | |
| C6 | C5 | doub | 1.35Å | 1.34Å | |
| N3 | C3U | sing | 1.46Å | 1.47Å | |
| N3 | C4 | sing | 1.35Å | 1.40Å | |
| C5 | C4 | sing | 1.42Å | 1.43Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| N | H1 | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | H4 | sing | 1.09Å | 1.10Å | |
| CD | H5 | sing | 1.09Å | 1.10Å | |
| CD | H6 | sing | 1.09Å | 1.10Å | |
| OD1 | H7 | sing | 0.97Å | 0.95Å | |
| C1' | H8 | sing | 1.09Å | 1.10Å | |
| C2' | H9 | sing | 1.09Å | 1.10Å | |
| C3' | H10 | sing | 1.09Å | 1.10Å | |
| C3U | H11 | sing | 1.09Å | 1.10Å | |
| C3U | H12 | sing | 1.09Å | 1.10Å | |
| C3U | H13 | sing | 1.09Å | 1.10Å | |
| C4' | H14 | sing | 1.09Å | 1.10Å | |
| C5 | H15 | sing | 1.08Å | 1.08Å | |
| C5' | H16 | sing | 1.09Å | 1.10Å | |
| C5' | H17 | sing | 1.09Å | 1.10Å | |
| C6 | H18 | sing | 1.08Å | 1.08Å | |
| N3S | H19 | sing | 0.97Å | 1.00Å | |
| O2' | H20 | sing | 0.97Å | 0.95Å | |
| O3' | H21 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OD2 | CG | OD1 | 124.7° | 120.0° |
| OD2 | CG | CD | 117.2° | 120.0° |
| OD1 | CG | CD | 118.0° | 120.0° |
| CG | OD1 | H7 | 109.5° | 117.0° |
| CG | CD | CA | 113.7° | 109.5° |
| CG | CD | H5 | 108.4° | 109.5° |
| CG | CD | H6 | 108.4° | 109.5° |
| CD | CA | N | 116.5° | 109.5° |
| CD | CA | C | 106.6° | 109.5° |
| CD | CA | H4 | 110.1° | 109.5° |
| CA | CD | H5 | 108.4° | 109.5° |
| CA | CD | H6 | 108.4° | 109.5° |
| O3' | C3' | C4' | 109.7° | 110.6° |
| O3' | C3' | C2' | 112.3° | 110.5° |
| O3' | C3' | H10 | 111.8° | 110.4° |
| C3' | O3' | H21 | 109.5° | 114.0° |
| O2' | C2' | C3' | 111.7° | 110.9° |
| O2' | C2' | C1' | 107.4° | 110.9° |
| O2' | C2' | H9 | 112.7° | 110.8° |
| C2' | O2' | H20 | 109.5° | 114.0° |
| C5' | C4' | C3' | 115.2° | 109.9° |
| C5' | C4' | O4' | 109.6° | 110.0° |
| C4' | C5' | O5' | 106.6° | 109.5° |
| C5' | C4' | H14 | 109.2° | 109.9° |
| C4' | C5' | H16 | 110.2° | 109.5° |
| C4' | C5' | H17 | 110.2° | 109.5° |
| C3' | C4' | O4' | 103.5° | 107.4° |
| C4' | C3' | C2' | 102.2° | 104.2° |
| C4' | C3' | H10 | 110.3° | 110.4° |
| C3' | C4' | H14 | 109.1° | 109.9° |
| C4' | O4' | C1' | 108.8° | 106.9° |
| O4' | C4' | H14 | 110.1° | 109.8° |
| C5' | O5' | S | 118.0° | 114.0° |
| O5' | C5' | H16 | 110.2° | 109.5° |
| O5' | C5' | H17 | 110.2° | 109.4° |
| N | CA | C | 102.4° | 109.5° |
| CA | N | H1 | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| N | CA | H4 | 110.8° | 109.5° |
| CA | C | N3S | 116.8° | 120.0° |
| CA | C | O | 124.9° | 120.0° |
| C | CA | H4 | 110.0° | 109.4° |
| C3' | C2' | C1' | 102.8° | 102.1° |
| C3' | C2' | H9 | 111.0° | 110.9° |
| C2' | C3' | H10 | 110.1° | 110.5° |
| O4' | C1' | C2' | 107.6° | 103.6° |
| O4' | C1' | N1 | 109.2° | 110.6° |
| O4' | C1' | H8 | 109.5° | 110.7° |
| C2' | C1' | N1 | 113.8° | 110.6° |
| C2' | C1' | H8 | 108.0° | 110.5° |
| C1' | C2' | H9 | 110.8° | 110.9° |
| N3S | C | O | 118.4° | 120.0° |
| C | N3S | S | 126.9° | 120.0° |
| C | N3S | H19 | 116.6° | 120.0° |
| C1' | N1 | C2 | 116.6° | 119.7° |
| C1' | N1 | C6 | 121.1° | 119.7° |
| N1 | C1' | H8 | 108.8° | 110.5° |
| N3S | S | O5' | 105.6° | 107.2° |
| N3S | S | O1S | 108.0° | 106.4° |
| N3S | S | O2S | 111.8° | 106.4° |
| S | N3S | H19 | 116.5° | 120.0° |
| O5' | S | O1S | 106.1° | 106.4° |
| O5' | S | O2S | 102.7° | 106.4° |
| O1S | S | O2S | 121.3° | 123.2° |
| O2 | C2 | N1 | 123.1° | 119.6° |
| O2 | C2 | N3 | 121.2° | 119.5° |
| C2 | N1 | C6 | 122.2° | 120.6° |
| N1 | C2 | N3 | 115.8° | 121.0° |
| N1 | C6 | C5 | 121.5° | 119.7° |
| N1 | C6 | H18 | 119.3° | 120.1° |
| C2 | N3 | C3U | 117.2° | 119.9° |
| C2 | N3 | C4 | 124.5° | 120.3° |
| C6 | C5 | C4 | 120.5° | 119.2° |
| C6 | C5 | H15 | 119.7° | 120.4° |
| C5 | C6 | H18 | 119.2° | 120.2° |
| C3U | N3 | C4 | 118.2° | 119.8° |
| N3 | C3U | H11 | 109.5° | 109.5° |
| N3 | C3U | H12 | 109.5° | 109.5° |
| N3 | C3U | H13 | 109.5° | 109.5° |
| N3 | C4 | C5 | 115.5° | 119.3° |
| N3 | C4 | O4 | 119.6° | 120.4° |
| C5 | C4 | O4 | 124.9° | 120.3° |
| C4 | C5 | H15 | 119.8° | 120.4° |
| H1 | N | H2 | 109.5° | 111.0° |
| H5 | CD | H6 | 109.5° | 109.4° |
| H11 | C3U | H12 | 109.5° | 109.4° |
| H11 | C3U | H13 | 109.5° | 109.5° |
| H12 | C3U | H13 | 109.5° | 109.5° |
| H16 | C5' | H17 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OD2 | CG | OD1 | CD | 179.9° | 180.0° |
| OD2 | CG | CD | CA | 132.3° | 0.0° |
| OD2 | CG | CD | H5 | 107.1° | 120.0° |
| OD2 | CG | CD | H6 | 11.7° | 120.0° |
| OD2 | CG | OD1 | H7 | 0.0° | 0.1° |
| OD1 | CG | CD | CA | 47.6° | 180.0° |
| OD1 | CG | CD | H5 | 73.1° | 60.0° |
| OD1 | CG | CD | H6 | 168.2° | 60.0° |
| CG | CD | CA | H5 | 120.6° | 120.0° |
| CG | CD | CA | H6 | 120.6° | 120.0° |
| CG | CD | CA | N | 81.9° | 65.0° |
| CG | CD | CA | C | 164.7° | 175.0° |
| CG | CD | CA | H4 | 45.4° | 55.0° |
| CG | CD | H5 | H6 | 118.0° | 120.0° |
| CD | CG | OD1 | H7 | 179.8° | 180.0° |
| CD | CA | N | C | 115.8° | 120.0° |
| CD | CA | N | H4 | 126.9° | 120.0° |
| CD | CA | C | H4 | 119.3° | 120.0° |
| CD | CA | C | N3S | 68.0° | 80.0° |
| CD | CA | C | O | 111.4° | 100.0° |
| CD | CA | N | H1 | 180.0° | 176.0° |
| CD | CA | N | H2 | 60.0° | 60.0° |
| CA | CD | H5 | H6 | 118.1° | 120.0° |
| O3' | C3' | C2' | O2' | 32.5° | 20.3° |
| O3' | C3' | C4' | C5' | 82.1° | 119.8° |
| O3' | C3' | C4' | C2' | 119.3° | 118.7° |
| O3' | C3' | C4' | H10 | 123.6° | 122.5° |
| O3' | C3' | C4' | O4' | 158.3° | 120.6° |
| O3' | C3' | C2' | H10 | 125.3° | 122.6° |
| O3' | C3' | C2' | C1' | 147.3° | 97.9° |
| O3' | C3' | C2' | H9 | 94.1° | 143.9° |
| O3' | C3' | C4' | H14 | 41.1° | 1.2° |
| O2' | C2' | C3' | C4' | 85.0° | 139.1° |
| O2' | C2' | C3' | C1' | 114.9° | 118.3° |
| O2' | C2' | C3' | H9 | 126.6° | 123.6° |
| O2' | C2' | C1' | O4' | 107.1° | 155.2° |
| O2' | C2' | C1' | H9 | 123.5° | 123.6° |
| O2' | C2' | C1' | N1 | 131.8° | 86.2° |
| O2' | C2' | C1' | H8 | 11.0° | 36.6° |
| O2' | C2' | C3' | H10 | 157.7° | 102.2° |
| C5' | C4' | C3' | O4' | 119.6° | 119.6° |
| C5' | C4' | C3' | H14 | 123.2° | 121.0° |
| C5' | C4' | O4' | H14 | 120.1° | 121.0° |
| C4' | C5' | O5' | H16 | 119.6° | 120.0° |
| C4' | C5' | O5' | H17 | 119.6° | 120.0° |
| C5' | C4' | C3' | C2' | 158.6° | 121.5° |
| C5' | C4' | O4' | C1' | 157.0° | 145.8° |
| C4' | C5' | O5' | S | 128.2° | 180.0° |
| C5' | C4' | C3' | H10 | 41.5° | 2.7° |
| C4' | C5' | H16 | H17 | 121.3° | 120.0° |
| C3' | C4' | O4' | H14 | 116.5° | 119.4° |
| C3' | C4' | C5' | O5' | 68.3° | 175.1° |
| C4' | C3' | C2' | H10 | 117.2° | 118.6° |
| C3' | C4' | O4' | C1' | 33.6° | 26.2° |
| C4' | C3' | C2' | C1' | 29.8° | 20.9° |
| C4' | C3' | C2' | H9 | 148.4° | 97.3° |
| C3' | C4' | C5' | H16 | 172.1° | 55.0° |
| C3' | C4' | C5' | H17 | 51.3° | 65.0° |
| C4' | C3' | O3' | H21 | 180.0° | 176.3° |
| O4' | C4' | C5' | O5' | 47.9° | 67.0° |
| O4' | C4' | C3' | C2' | 39.0° | 1.9° |
| C4' | O4' | C1' | C2' | 14.2° | 39.8° |
| C4' | O4' | C1' | N1 | 138.1° | 158.4° |
| C4' | O4' | C1' | H8 | 102.9° | 78.7° |
| O4' | C4' | C3' | H10 | 78.1° | 116.8° |
| O4' | C4' | C5' | H16 | 71.7° | 173.0° |
| O4' | C4' | C5' | H17 | 167.5° | 53.0° |
| C5' | O5' | S | N3S | 60.9° | 75.1° |
| C5' | O5' | S | O1S | 53.6° | 38.5° |
| C5' | O5' | S | O2S | 178.2° | 171.4° |
| O5' | C5' | C4' | H14 | 168.6° | 54.0° |
| O5' | C5' | H16 | H17 | 121.3° | 119.9° |
| N | CA | C | H4 | 117.9° | 120.0° |
| N | CA | C | N3S | 169.1° | 160.0° |
| N | CA | C | O | 11.4° | 20.0° |
| CA | N | H1 | H2 | 120.0° | 123.9° |
| N | CA | CD | H5 | 157.5° | 55.0° |
| N | CA | CD | H6 | 38.7° | 175.0° |
| CA | C | N3S | O | 179.5° | 180.0° |
| CA | C | N3S | S | 177.4° | 180.0° |
| C | CA | N | H1 | 64.1° | 63.9° |
| C | CA | N | H2 | 55.9° | 60.0° |
| C | CA | CD | H5 | 44.1° | 65.0° |
| C | CA | CD | H6 | 74.7° | 55.0° |
| CA | C | N3S | H19 | 2.6° | 0.1° |
| C3' | C2' | C1' | O4' | 10.8° | 36.9° |
| C3' | C2' | C1' | H9 | 118.6° | 118.2° |
| C3' | C2' | C1' | N1 | 110.3° | 155.5° |
| C3' | C2' | C1' | H8 | 128.9° | 81.7° |
| C2' | C3' | C4' | H14 | 78.3° | 117.5° |
| C3' | C2' | O2' | H20 | 180.0° | 67.3° |
| C2' | C3' | O3' | H21 | 67.1° | 61.5° |
| O4' | C1' | C2' | N1 | 121.1° | 118.6° |
| O4' | C1' | C2' | H8 | 118.1° | 118.6° |
| O4' | C1' | N1 | H8 | 119.5° | 123.0° |
| O4' | C1' | N1 | C2 | 133.9° | 128.6° |
| O4' | C1' | N1 | C6 | 48.1° | 51.4° |
| O4' | C1' | C2' | H9 | 129.4° | 81.2° |
| C1' | O4' | C4' | H14 | 82.8° | 93.2° |
| C2' | C1' | N1 | H8 | 120.4° | 122.8° |
| C2' | C1' | N1 | C2 | 105.9° | 117.1° |
| C2' | C1' | N1 | C6 | 72.1° | 62.9° |
| C1' | C2' | C3' | H10 | 87.4° | 139.5° |
| C1' | C2' | O2' | H20 | 68.0° | 180.0° |
| C | N3S | S | H19 | 180.0° | 179.9° |
| C | N3S | S | O5' | 55.5° | 65.0° |
| C | N3S | S | O1S | 168.6° | 178.5° |
| C | N3S | S | O2S | 55.5° | 48.5° |
| N3S | C | CA | H4 | 51.3° | 40.1° |
| O | C | N3S | S | 2.0° | 0.0° |
| O | C | CA | H4 | 129.3° | 140.0° |
| O | C | N3S | H19 | 178.0° | 179.9° |
| C1' | N1 | C2 | O2 | 4.0° | 0.3° |
| C1' | N1 | C2 | C6 | 177.9° | 180.0° |
| C1' | N1 | C2 | N3 | 176.9° | 180.0° |
| C1' | N1 | C6 | C5 | 177.7° | 180.0° |
| N1 | C1' | C2' | H9 | 8.3° | 37.4° |
| C1' | N1 | C6 | H18 | 2.4° | 0.0° |
| N3S | S | O5' | O1S | 114.5° | 113.5° |
| N3S | S | O5' | O2S | 117.3° | 113.5° |
| N3S | S | O1S | O2S | 130.9° | 123.0° |
| O5' | S | O1S | O2S | 116.3° | 123.0° |
| S | O5' | C5' | H16 | 112.2° | 59.9° |
| S | O5' | C5' | H17 | 8.6° | 60.1° |
| O5' | S | N3S | H19 | 124.5° | 115.0° |
| O1S | S | N3S | H19 | 11.4° | 1.4° |
| O2 | C2 | N1 | N3 | 179.0° | 179.7° |
| O2 | C2 | N1 | C6 | 178.0° | 179.7° |
| O2 | C2 | N3 | C3U | 4.5° | 0.3° |
| O2 | C2 | N3 | C4 | 177.5° | 179.7° |
| O2S | S | N3S | H19 | 124.5° | 131.5° |
| C2 | N1 | C6 | C5 | 0.2° | 0.0° |
| N1 | C2 | N3 | C3U | 176.4° | 180.0° |
| N1 | C2 | N3 | C4 | 1.5° | 0.0° |
| C2 | N1 | C1' | H8 | 14.5° | 5.6° |
| C2 | N1 | C6 | H18 | 179.8° | 180.0° |
| C6 | N1 | C2 | N3 | 1.0° | 0.0° |
| N1 | C6 | C5 | H18 | 180.0° | 180.0° |
| N1 | C6 | C5 | C4 | 0.2° | 0.0° |
| C6 | N1 | C1' | H8 | 167.6° | 174.4° |
| N1 | C6 | C5 | H15 | 179.8° | 180.0° |
| C2 | N3 | C3U | C4 | 178.1° | 180.0° |
| C2 | N3 | C4 | C5 | 1.1° | 0.0° |
| C2 | N3 | C4 | O4 | 178.1° | 179.9° |
| C2 | N3 | C3U | H11 | 180.0° | 90.0° |
| C2 | N3 | C3U | H12 | 60.0° | 150.0° |
| C2 | N3 | C3U | H13 | 60.0° | 30.0° |
| C6 | C5 | C4 | N3 | 0.2° | 0.1° |
| C6 | C5 | C4 | H15 | 180.0° | 180.0° |
| C6 | C5 | C4 | O4 | 178.9° | 180.0° |
| C3U | N3 | C4 | C5 | 176.8° | 180.0° |
| C3U | N3 | C4 | O4 | 4.0° | 0.1° |
| N3 | C3U | H11 | H12 | 120.0° | 120.0° |
| N3 | C3U | H11 | H13 | 120.0° | 120.0° |
| N3 | C3U | H12 | H13 | 120.0° | 120.0° |
| N3 | C4 | C5 | O4 | 179.1° | 179.9° |
| C4 | N3 | C3U | H11 | 1.9° | 90.0° |
| C4 | N3 | C3U | H12 | 118.1° | 30.0° |
| C4 | N3 | C3U | H13 | 121.9° | 150.0° |
| N3 | C4 | C5 | H15 | 179.8° | 180.0° |
| C4 | C5 | C6 | H18 | 179.8° | 180.0° |
| O4 | C4 | C5 | H15 | 1.1° | 0.1° |
| H1 | N | CA | H4 | 53.2° | 56.0° |
| H2 | N | CA | H4 | 173.2° | 180.0° |
| H4 | CA | CD | H5 | 75.2° | 175.0° |
| H4 | CA | CD | H6 | 166.0° | 65.0° |
| H8 | C1' | C2' | H9 | 112.5° | 160.2° |
| H9 | C2' | C3' | H10 | 31.1° | 21.3° |
| H9 | C2' | O2' | H20 | 54.3° | 56.3° |
| H10 | C3' | C4' | H14 | 164.6° | 123.8° |
| H10 | C3' | O3' | H21 | 57.3° | 61.1° |
| H11 | C3U | H12 | H13 | 120.0° | 120.0° |
| H14 | C4' | C5' | H16 | 49.0° | 66.0° |
| H14 | C4' | C5' | H17 | 71.8° | 173.9° |
| H15 | C5 | C6 | H18 | 0.2° | 0.0° |
