G5J
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N2 | C2 | sing | 1.37Å | 1.44Å | |
| C2 | N1 | doub | 1.32Å | 1.33Å | |
| C2 | N3 | sing | 1.36Å | 1.34Å | |
| N1 | C6 | sing | 1.34Å | 1.32Å | |
| N3 | C4 | sing | 1.37Å | 1.35Å | |
| C6 | O6 | doub | 1.22Å | 1.37Å | |
| C6 | C5 | sing | 1.47Å | 1.44Å | |
| C4 | C5 | doub | 1.39Å | 1.38Å | Aromatic |
| C4 | N9 | sing | 1.36Å | 1.36Å | Aromatic |
| O2' | C2' | sing | 1.43Å | 1.50Å | |
| C5 | N7 | sing | 1.35Å | 1.37Å | Aromatic |
| C2' | C1' | sing | 1.54Å | 1.35Å | |
| C2' | C3' | sing | 1.55Å | 1.54Å | |
| N9 | C1' | sing | 1.46Å | 1.45Å | |
| N9 | C8 | sing | 1.36Å | 1.34Å | Aromatic |
| C1' | O4' | sing | 1.44Å | 1.43Å | |
| N7 | C8 | doub | 1.30Å | 1.33Å | Aromatic |
| O3' | C3' | sing | 1.43Å | 1.34Å | |
| C3' | C4' | sing | 1.54Å | 1.59Å | |
| O4' | C4' | sing | 1.44Å | 1.45Å | |
| C4' | C5' | sing | 1.53Å | 1.54Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| O5' | PA | sing | 1.61Å | 1.68Å | |
| O2B | PB | doub | 1.48Å | 1.46Å | |
| O2A | PA | doub | 1.48Å | 1.53Å | |
| PA | O1A | sing | 1.61Å | 1.47Å | |
| PA | O3A | sing | 1.61Å | 1.63Å | |
| PB | O3A | sing | 1.61Å | 1.62Å | |
| PB | O1B | sing | 1.61Å | 1.52Å | |
| PB | O3B | sing | 1.61Å | 1.59Å | |
| O3B | PG | sing | 1.61Å | 1.64Å | |
| PG | O1G | doub | 1.48Å | 1.51Å | |
| PG | O2G | sing | 1.61Å | 1.51Å | |
| PG | O3G | sing | 1.61Å | 1.61Å | |
| O3G | C3G | sing | 1.43Å | 1.40Å | |
| N2 | H1 | sing | 0.97Å | 1.00Å | |
| N2 | H2 | sing | 0.97Å | 1.00Å | |
| O2' | H3 | sing | 0.97Å | 0.95Å | |
| O3' | H4 | sing | 0.97Å | 0.95Å | |
| C1' | H5 | sing | 1.09Å | 1.10Å | |
| C2' | H6 | sing | 1.09Å | 1.10Å | |
| C3' | H7 | sing | 1.09Å | 1.10Å | |
| C3G | H8 | sing | 1.09Å | 1.10Å | |
| C3G | H9 | sing | 1.09Å | 1.10Å | |
| C3G | H10 | sing | 1.09Å | 1.10Å | |
| C4' | H11 | sing | 1.09Å | 1.10Å | |
| C5' | H12 | sing | 1.09Å | 1.10Å | |
| C5' | H13 | sing | 1.09Å | 1.10Å | |
| C8 | H14 | sing | 1.08Å | 1.08Å | |
| N3 | H15 | sing | 0.97Å | 1.00Å | |
| O1A | H16 | sing | 0.97Å | 0.95Å | |
| O1B | H17 | sing | 0.97Å | 0.95Å | |
| O2G | H18 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N2 | C2 | N1 | 119.6° | 118.7° |
| N2 | C2 | N3 | 119.0° | 118.8° |
| C2 | N2 | H1 | 120.0° | 120.0° |
| C2 | N2 | H2 | 120.0° | 120.0° |
| N1 | C2 | N3 | 121.3° | 122.5° |
| C2 | N1 | C6 | 121.9° | 121.3° |
| C2 | N3 | C4 | 119.9° | 120.5° |
| C2 | N3 | H15 | 120.0° | 119.7° |
| N1 | C6 | O6 | 120.9° | 120.7° |
| N1 | C6 | C5 | 118.8° | 118.6° |
| N3 | C4 | C5 | 121.0° | 118.9° |
| N3 | C4 | N9 | 132.8° | 134.7° |
| C4 | N3 | H15 | 120.1° | 119.7° |
| O6 | C6 | C5 | 120.2° | 120.7° |
| C6 | C5 | C4 | 117.0° | 118.2° |
| C6 | C5 | N7 | 135.8° | 134.5° |
| C5 | C4 | N9 | 106.2° | 106.4° |
| C4 | C5 | N7 | 107.2° | 107.3° |
| C4 | N9 | C1' | 124.7° | 126.2° |
| C4 | N9 | C8 | 109.3° | 107.5° |
| O2' | C2' | C1' | 109.3° | 110.5° |
| O2' | C2' | C3' | 107.4° | 110.5° |
| C2' | O2' | H3 | 109.5° | 114.0° |
| O2' | C2' | H6 | 110.8° | 110.5° |
| C5 | N7 | C8 | 108.7° | 109.2° |
| C1' | C2' | C3' | 105.6° | 104.0° |
| C2' | C1' | N9 | 112.5° | 110.4° |
| C2' | C1' | O4' | 110.2° | 104.8° |
| C2' | C1' | H5 | 108.9° | 110.4° |
| C1' | C2' | H6 | 113.3° | 110.5° |
| C2' | C3' | O3' | 113.7° | 110.5° |
| C2' | C3' | C4' | 96.9° | 104.1° |
| C3' | C2' | H6 | 110.2° | 110.6° |
| C2' | C3' | H7 | 110.1° | 110.5° |
| C1' | N9 | C8 | 126.0° | 126.3° |
| N9 | C1' | O4' | 109.8° | 110.3° |
| N9 | C1' | H5 | 107.5° | 110.3° |
| N9 | C8 | N7 | 108.5° | 109.5° |
| N9 | C8 | H14 | 125.7° | 125.2° |
| C1' | O4' | C4' | 107.6° | 105.3° |
| O4' | C1' | H5 | 107.7° | 110.4° |
| N7 | C8 | H14 | 125.8° | 125.3° |
| O3' | C3' | C4' | 112.1° | 110.5° |
| C3' | O3' | H4 | 109.5° | 114.0° |
| O3' | C3' | H7 | 113.4° | 110.4° |
| C3' | C4' | O4' | 102.8° | 104.8° |
| C3' | C4' | C5' | 110.7° | 110.4° |
| C4' | C3' | H7 | 109.5° | 110.7° |
| C3' | C4' | H11 | 111.0° | 110.4° |
| O4' | C4' | C5' | 107.3° | 110.4° |
| O4' | C4' | H11 | 113.1° | 110.4° |
| C4' | C5' | O5' | 104.2° | 109.5° |
| C5' | C4' | H11 | 111.7° | 110.4° |
| C4' | C5' | H12 | 110.8° | 109.5° |
| C4' | C5' | H13 | 110.8° | 109.5° |
| C5' | O5' | PA | 119.4° | 123.0° |
| O5' | C5' | H12 | 110.8° | 109.4° |
| O5' | C5' | H13 | 110.8° | 109.5° |
| O5' | PA | O2A | 109.1° | 109.4° |
| O5' | PA | O1A | 110.8° | 109.4° |
| O5' | PA | O3A | 104.6° | 109.5° |
| O2B | PB | O3A | 113.1° | 109.4° |
| O2B | PB | O1B | 111.0° | 109.5° |
| O2B | PB | O3B | 108.2° | 109.5° |
| O2A | PA | O1A | 114.5° | 109.5° |
| O2A | PA | O3A | 112.4° | 109.5° |
| O1A | PA | O3A | 104.9° | 109.5° |
| PA | O1A | H16 | 109.5° | 114.0° |
| PA | O3A | PB | 124.2° | 134.0° |
| O3A | PB | O1B | 110.0° | 109.5° |
| O3A | PB | O3B | 102.3° | 109.5° |
| O1B | PB | O3B | 112.0° | 109.5° |
| PB | O1B | H17 | 109.5° | 114.0° |
| PB | O3B | PG | 121.7° | 134.0° |
| O3B | PG | O1G | 105.3° | 109.5° |
| O3B | PG | O2G | 110.9° | 109.5° |
| O3B | PG | O3G | 105.9° | 109.5° |
| O1G | PG | O2G | 109.8° | 109.5° |
| O1G | PG | O3G | 113.4° | 109.5° |
| O2G | PG | O3G | 111.3° | 109.5° |
| PG | O2G | H18 | 109.5° | 114.0° |
| PG | O3G | C3G | 115.7° | 123.0° |
| O3G | C3G | H8 | 109.5° | 109.5° |
| O3G | C3G | H9 | 109.5° | 109.5° |
| O3G | C3G | H10 | 109.5° | 109.4° |
| H1 | N2 | H2 | 120.0° | 120.0° |
| H8 | C3G | H9 | 109.5° | 109.5° |
| H8 | C3G | H10 | 109.4° | 109.5° |
| H9 | C3G | H10 | 109.5° | 109.5° |
| H12 | C5' | H13 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N2 | C2 | N1 | N3 | 179.6° | 179.8° |
| N2 | C2 | N1 | C6 | 179.4° | 179.7° |
| N2 | C2 | N3 | C4 | 179.5° | 179.7° |
| C2 | N2 | H1 | H2 | 180.0° | 179.9° |
| N2 | C2 | N3 | H15 | 0.5° | 0.3° |
| N1 | C2 | N3 | C4 | 0.1° | 0.1° |
| C2 | N1 | C6 | O6 | 179.5° | 180.0° |
| C2 | N1 | C6 | C5 | 0.3° | 0.0° |
| N1 | C2 | N2 | H1 | 0.0° | 0.1° |
| N1 | C2 | N2 | H2 | 180.0° | 180.0° |
| N1 | C2 | N3 | H15 | 179.9° | 179.9° |
| N3 | C2 | N1 | C6 | 0.2° | 0.0° |
| C2 | N3 | C4 | H15 | 180.0° | 180.0° |
| C2 | N3 | C4 | C5 | 0.0° | 0.1° |
| C2 | N3 | C4 | N9 | 179.7° | 180.0° |
| N3 | C2 | N2 | H1 | 179.6° | 179.7° |
| N3 | C2 | N2 | H2 | 0.4° | 0.2° |
| N1 | C6 | O6 | C5 | 179.2° | 180.0° |
| N1 | C6 | C5 | C4 | 0.2° | 0.0° |
| N1 | C6 | C5 | N7 | 178.8° | 180.0° |
| N3 | C4 | C5 | C6 | 0.0° | 0.1° |
| N3 | C4 | C5 | N9 | 179.7° | 179.9° |
| N3 | C4 | C5 | N7 | 179.2° | 180.0° |
| N3 | C4 | N9 | C1' | 0.8° | 0.1° |
| N3 | C4 | N9 | C8 | 179.5° | 179.9° |
| O6 | C6 | C5 | C4 | 179.4° | 180.0° |
| O6 | C6 | C5 | N7 | 0.5° | 0.0° |
| C6 | C5 | C4 | N7 | 179.2° | 180.0° |
| C6 | C5 | C4 | N9 | 179.8° | 180.0° |
| C6 | C5 | N7 | C8 | 179.7° | 180.0° |
| C5 | C4 | N9 | C1' | 179.5° | 180.0° |
| C5 | C4 | N9 | C8 | 0.2° | 0.0° |
| C4 | C5 | N7 | C8 | 0.7° | 0.0° |
| C5 | C4 | N3 | H15 | 180.0° | 179.9° |
| N9 | C4 | C5 | N7 | 0.6° | 0.0° |
| C4 | N9 | C1' | C2' | 67.1° | 88.1° |
| C4 | N9 | C1' | C8 | 179.7° | 180.0° |
| C4 | N9 | C1' | O4' | 169.7° | 156.4° |
| C4 | N9 | C8 | N7 | 0.3° | 0.0° |
| C4 | N9 | C1' | H5 | 52.7° | 34.2° |
| C4 | N9 | C8 | H14 | 179.7° | 179.9° |
| N9 | C4 | N3 | H15 | 0.3° | 0.0° |
| O2' | C2' | C1' | C3' | 115.2° | 118.6° |
| O2' | C2' | C1' | H6 | 124.1° | 122.7° |
| O2' | C2' | C3' | H6 | 120.7° | 122.7° |
| O2' | C2' | C1' | N9 | 151.6° | 98.6° |
| O2' | C2' | C1' | O4' | 85.4° | 142.6° |
| O2' | C2' | C3' | O3' | 41.0° | 0.1° |
| O2' | C2' | C3' | C4' | 76.9° | 118.6° |
| O2' | C2' | C1' | H5 | 32.5° | 23.7° |
| O2' | C2' | C3' | H7 | 169.4° | 122.6° |
| C5 | N7 | C8 | N9 | 0.6° | 0.0° |
| C5 | N7 | C8 | H14 | 179.4° | 180.0° |
| C1' | C2' | C3' | H6 | 122.7° | 118.7° |
| C2' | C1' | N9 | O4' | 123.1° | 115.4° |
| C2' | C1' | N9 | H5 | 119.9° | 122.3° |
| C2' | C1' | N9 | C8 | 112.5° | 91.9° |
| C2' | C1' | O4' | H5 | 118.7° | 118.9° |
| C1' | C2' | C3' | O3' | 157.6° | 118.7° |
| C1' | C2' | C3' | C4' | 39.7° | 0.0° |
| C2' | C1' | O4' | C4' | 4.9° | 40.6° |
| C1' | C2' | O2' | H3 | 180.0° | 180.0° |
| C1' | C2' | C3' | H7 | 74.0° | 118.8° |
| C3' | C2' | C1' | N9 | 93.2° | 142.8° |
| C3' | C2' | C1' | O4' | 29.8° | 24.0° |
| C2' | C3' | O3' | C4' | 108.7° | 114.7° |
| C2' | C3' | O3' | H7 | 126.7° | 122.6° |
| C2' | C3' | C4' | H7 | 114.2° | 118.7° |
| C2' | C3' | C4' | O4' | 35.5° | 24.0° |
| C2' | C3' | C4' | C5' | 149.8° | 142.8° |
| C3' | C2' | O2' | H3 | 65.9° | 65.4° |
| C2' | C3' | O3' | H4 | 180.0° | 61.4° |
| C3' | C2' | C1' | H5 | 147.7° | 94.9° |
| C2' | C3' | C4' | H11 | 85.7° | 94.8° |
| N9 | C1' | O4' | H5 | 116.9° | 122.2° |
| C1' | N9 | C8 | N7 | 180.0° | 180.0° |
| N9 | C1' | O4' | C4' | 119.6° | 159.5° |
| N9 | C1' | C2' | H6 | 27.6° | 24.1° |
| C1' | N9 | C8 | H14 | 0.0° | 0.1° |
| C8 | N9 | C1' | O4' | 10.6° | 23.6° |
| N9 | C8 | N7 | H14 | 180.0° | 180.0° |
| C8 | N9 | C1' | H5 | 127.6° | 145.8° |
| C1' | O4' | C4' | C3' | 21.1° | 40.6° |
| C1' | O4' | C4' | C5' | 137.8° | 159.3° |
| O4' | C1' | C2' | H6 | 150.5° | 94.8° |
| C1' | O4' | C4' | H11 | 98.6° | 78.3° |
| O3' | C3' | C4' | H7 | 126.7° | 122.6° |
| O3' | C3' | C4' | O4' | 154.6° | 142.7° |
| O3' | C3' | C4' | C5' | 91.1° | 98.5° |
| O3' | C3' | C2' | H6 | 79.7° | 122.7° |
| O3' | C3' | C4' | H11 | 33.4° | 23.8° |
| C3' | C4' | O4' | C5' | 116.7° | 118.8° |
| C3' | C4' | O4' | H11 | 119.7° | 118.8° |
| C3' | C4' | C5' | H11 | 124.2° | 122.3° |
| C3' | C4' | C5' | O5' | 47.1° | 178.2° |
| C4' | C3' | O3' | H4 | 71.3° | 176.1° |
| C4' | C3' | C2' | H6 | 162.4° | 118.7° |
| C3' | C4' | C5' | H12 | 166.3° | 61.8° |
| C3' | C4' | C5' | H13 | 72.0° | 58.2° |
| O4' | C4' | C5' | H11 | 124.4° | 122.3° |
| O4' | C4' | C5' | O5' | 64.3° | 66.4° |
| C4' | O4' | C1' | H5 | 123.5° | 78.3° |
| O4' | C4' | C3' | H7 | 78.7° | 94.7° |
| O4' | C4' | C5' | H12 | 54.9° | 53.5° |
| O4' | C4' | C5' | H13 | 176.5° | 173.5° |
| C4' | C5' | O5' | H12 | 119.1° | 120.0° |
| C4' | C5' | O5' | H13 | 119.2° | 120.0° |
| C4' | C5' | O5' | PA | 172.2° | 180.0° |
| C5' | C4' | C3' | H7 | 35.6° | 24.1° |
| C4' | C5' | H12 | H13 | 122.4° | 120.0° |
| C5' | O5' | PA | O2A | 173.6° | 55.0° |
| C5' | O5' | PA | O1A | 46.5° | 65.0° |
| C5' | O5' | PA | O3A | 65.9° | 175.0° |
| O5' | C5' | C4' | H11 | 171.3° | 55.9° |
| O5' | C5' | H12 | H13 | 122.5° | 120.1° |
| O5' | PA | O2A | O1A | 124.8° | 120.0° |
| O5' | PA | O2A | O3A | 115.6° | 120.0° |
| O5' | PA | O1A | O3A | 112.3° | 120.0° |
| O5' | PA | O3A | PB | 77.9° | 160.0° |
| PA | O5' | C5' | H12 | 68.6° | 60.1° |
| PA | O5' | C5' | H13 | 53.1° | 60.0° |
| O5' | PA | O1A | H16 | 123.9° | 60.0° |
| O2B | PB | O3A | PA | 42.6° | 45.0° |
| O2B | PB | O3A | O1B | 124.7° | 120.0° |
| O2B | PB | O3A | O3B | 116.1° | 120.0° |
| O2B | PB | O1B | O3B | 121.1° | 120.0° |
| O2B | PB | O3B | PG | 176.4° | 40.0° |
| O2B | PB | O1B | H17 | 0.0° | 180.0° |
| O2A | PA | O1A | O3A | 123.8° | 120.1° |
| O2A | PA | O3A | PB | 40.4° | 40.0° |
| O2A | PA | O1A | H16 | 0.0° | 180.0° |
| O1A | PA | O3A | PB | 165.5° | 80.0° |
| PA | O3A | PB | O1B | 82.1° | 75.0° |
| PA | O3A | PB | O3B | 158.8° | 165.0° |
| O3A | PA | O1A | H16 | 123.8° | 60.0° |
| O3A | PB | O1B | O3B | 113.0° | 120.0° |
| O3A | PB | O3B | PG | 64.0° | 160.0° |
| O3A | PB | O1B | H17 | 125.9° | 60.0° |
| O1B | PB | O3B | PG | 53.8° | 80.0° |
| PB | O3B | PG | O1G | 145.7° | 40.0° |
| PB | O3B | PG | O2G | 27.1° | 80.0° |
| PB | O3B | PG | O3G | 93.8° | 160.0° |
| O3B | PB | O1B | H17 | 121.0° | 60.0° |
| O3B | PG | O1G | O2G | 119.4° | 120.0° |
| O3B | PG | O1G | O3G | 115.4° | 120.0° |
| O3B | PG | O2G | O3G | 117.7° | 120.0° |
| O3B | PG | O3G | C3G | 85.6° | 175.0° |
| O3B | PG | O2G | H18 | 115.9° | 60.0° |
| O1G | PG | O2G | O3G | 126.5° | 120.0° |
| O1G | PG | O3G | C3G | 29.4° | 55.0° |
| O1G | PG | O2G | H18 | 0.0° | 180.0° |
| O2G | PG | O3G | C3G | 153.8° | 65.0° |
| PG | O3G | C3G | H8 | 180.0° | 60.1° |
| PG | O3G | C3G | H9 | 60.0° | 60.0° |
| PG | O3G | C3G | H10 | 60.0° | 180.0° |
| O3G | PG | O2G | H18 | 126.4° | 60.0° |
| O3G | C3G | H8 | H9 | 120.0° | 120.0° |
| O3G | C3G | H8 | H10 | 120.0° | 119.9° |
| O3G | C3G | H9 | H10 | 120.0° | 119.9° |
| H3 | O2' | C2' | H6 | 54.4° | 57.3° |
| H4 | O3' | C3' | H7 | 53.3° | 61.2° |
| H5 | C1' | C2' | H6 | 91.6° | 146.4° |
| H6 | C2' | C3' | H7 | 48.7° | 0.1° |
| H7 | C3' | C4' | H11 | 160.2° | 146.5° |
| H8 | C3G | H9 | H10 | 120.0° | 120.0° |
| H11 | C4' | C5' | H12 | 69.5° | 175.8° |
| H11 | C4' | C5' | H13 | 52.1° | 64.2° |
