G5A
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C | N3S | sing | 1.35Å | 1.33Å | |
| N | CA | sing | 1.47Å | 1.45Å | |
| N | HN | sing | 1.01Å | 1.00Å | |
| N | HNA | sing | 1.01Å | 1.00Å | |
| O | C | doub | 1.21Å | 1.22Å | |
| S | O5' | sing | 1.52Å | 1.61Å | |
| S | O2S | doub | 1.42Å | 1.42Å | |
| N1 | C2 | sing | 1.32Å | 1.34Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| N3 | C2 | doub | 1.32Å | 1.34Å | Aromatic |
| C4 | N3 | sing | 1.33Å | 1.35Å | Aromatic |
| C5 | C4 | doub | 1.40Å | 1.43Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.44Å | Aromatic |
| C6 | N1 | doub | 1.33Å | 1.35Å | Aromatic |
| N6 | C6 | sing | 1.38Å | 1.35Å | |
| N6 | HN6 | sing | 0.97Å | 1.00Å | |
| N6 | HN6A | sing | 0.97Å | 1.00Å | |
| N7 | C5 | sing | 1.35Å | 1.35Å | Aromatic |
| N7 | C8 | doub | 1.30Å | 1.36Å | Aromatic |
| C8 | N9 | sing | 1.36Å | 1.35Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N9 | C4 | sing | 1.37Å | 1.33Å | Aromatic |
| N9 | C1' | sing | 1.47Å | 1.48Å | |
| CA | C | sing | 1.51Å | 1.52Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CA | HAA | sing | 1.09Å | 1.10Å | |
| C1' | C2' | sing | 1.55Å | 1.49Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| O1S | S | doub | 1.42Å | 1.41Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | C2' | sing | 1.55Å | 1.47Å | |
| C3' | O3' | sing | 1.43Å | 1.40Å | |
| N3S | S | sing | 1.66Å | 1.58Å | |
| N3S | HN3S | sing | 0.97Å | 1.00Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.49Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C3' | H16 | sing | 1.09Å | 1.10Å | |
| O3' | H17 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N3S | C | O | 123.7° | 120.0° |
| N3S | C | CA | 115.0° | 120.0° |
| C | N3S | S | 121.9° | 120.0° |
| C | N3S | HN3S | 119.1° | 120.1° |
| CA | N | HN | 109.5° | 111.0° |
| CA | N | HNA | 109.5° | 111.0° |
| N | CA | C | 112.9° | 109.5° |
| N | CA | HA | 108.3° | 109.5° |
| N | CA | HAA | 108.4° | 109.5° |
| HN | N | HNA | 109.4° | 111.1° |
| O | C | CA | 121.3° | 120.0° |
| O5' | S | O2S | 104.2° | 106.4° |
| O5' | S | O1S | 104.5° | 106.4° |
| O5' | S | N3S | 104.2° | 107.2° |
| S | O5' | C5' | 118.2° | 114.0° |
| O2S | S | O1S | 115.0° | 123.1° |
| O2S | S | N3S | 113.5° | 106.4° |
| N1 | C2 | H2 | 118.8° | 118.8° |
| N1 | C2 | N3 | 122.3° | 122.5° |
| C2 | N1 | C6 | 121.6° | 121.2° |
| H2 | C2 | N3 | 118.9° | 118.8° |
| C2 | N3 | C4 | 120.3° | 120.6° |
| N3 | C4 | C5 | 119.9° | 119.1° |
| N3 | C4 | N9 | 133.0° | 134.9° |
| C4 | C5 | C6 | 117.3° | 118.2° |
| C4 | C5 | N7 | 106.8° | 107.1° |
| C5 | C4 | N9 | 107.0° | 106.0° |
| C5 | C6 | N1 | 118.6° | 118.4° |
| C5 | C6 | N6 | 121.2° | 120.8° |
| C6 | C5 | N7 | 135.9° | 134.7° |
| N1 | C6 | N6 | 120.2° | 120.8° |
| C6 | N6 | HN6 | 109.5° | 120.0° |
| C6 | N6 | HN6A | 109.4° | 120.0° |
| HN6 | N6 | HN6A | 109.5° | 120.0° |
| C5 | N7 | C8 | 107.6° | 109.5° |
| N7 | C8 | N9 | 109.6° | 109.9° |
| N7 | C8 | H8 | 125.2° | 125.1° |
| N9 | C8 | H8 | 125.2° | 125.0° |
| C8 | N9 | C4 | 108.9° | 107.5° |
| C8 | N9 | C1' | 128.1° | 126.2° |
| C4 | N9 | C1' | 123.0° | 126.3° |
| N9 | C1' | C2' | 114.3° | 110.6° |
| N9 | C1' | H1' | 104.2° | 110.5° |
| N9 | C1' | O4' | 110.1° | 110.6° |
| C | CA | HA | 108.4° | 109.4° |
| C | CA | HAA | 108.3° | 109.5° |
| HA | CA | HAA | 110.6° | 109.4° |
| C2' | C1' | H1' | 109.8° | 110.7° |
| C1' | C2' | O2' | 110.9° | 110.9° |
| C1' | C2' | H2' | 108.0° | 110.9° |
| C1' | C2' | C3' | 110.1° | 102.0° |
| C2' | C1' | O4' | 104.5° | 103.5° |
| H1' | C1' | O4' | 114.0° | 110.7° |
| O1S | S | N3S | 113.8° | 106.4° |
| O2' | C2' | H2' | 108.9° | 110.8° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| O2' | C2' | C3' | 109.1° | 110.9° |
| H2' | C2' | C3' | 109.8° | 111.0° |
| C2' | C3' | O3' | 122.2° | 110.5° |
| C2' | C3' | C4' | 99.9° | 104.2° |
| C2' | C3' | H16 | 114.9° | 110.5° |
| O3' | C3' | C4' | 123.3° | 110.5° |
| O3' | C3' | H16 | 83.3° | 110.5° |
| C3' | O3' | H17 | 109.5° | 114.0° |
| S | N3S | HN3S | 119.1° | 120.0° |
| C3' | C4' | O4' | 110.7° | 107.3° |
| C3' | C4' | H4' | 103.8° | 109.8° |
| C3' | C4' | C5' | 120.6° | 109.9° |
| C4' | C3' | H16 | 113.5° | 110.6° |
| O4' | C4' | H4' | 107.8° | 109.9° |
| C4' | O4' | C1' | 109.2° | 107.0° |
| O4' | C4' | C5' | 118.1° | 109.9° |
| H4' | C4' | C5' | 92.0° | 110.0° |
| C4' | C5' | H5' | 110.8° | 109.5° |
| C4' | C5' | H5'A | 110.8° | 109.5° |
| C4' | C5' | O5' | 105.5° | 109.5° |
| H5' | C5' | H5'A | 108.1° | 109.5° |
| H5' | C5' | O5' | 110.8° | 109.5° |
| H5'A | C5' | O5' | 110.8° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N3S | C | CA | N | 174.4° | 180.0° |
| N3S | C | O | CA | 179.5° | 179.8° |
| C | N3S | S | O5' | 69.1° | 65.0° |
| C | N3S | S | O2S | 178.1° | 48.5° |
| N3S | C | CA | HA | 54.4° | 60.0° |
| N3S | C | CA | HAA | 65.6° | 59.9° |
| C | N3S | S | O1S | 44.1° | 178.6° |
| C | N3S | S | HN3S | 180.0° | 179.9° |
| CA | N | HN | HNA | 120.0° | 124.0° |
| N | CA | C | O | 5.2° | 0.2° |
| N | CA | C | HA | 120.0° | 120.0° |
| N | CA | C | HAA | 120.0° | 120.1° |
| N | CA | HA | HAA | 118.6° | 120.1° |
| HN | N | CA | C | 180.0° | 56.0° |
| HN | N | CA | HA | 60.0° | 64.0° |
| HN | N | CA | HAA | 60.0° | 176.0° |
| HNA | N | CA | C | 60.0° | 180.0° |
| HNA | N | CA | HA | 60.0° | 60.0° |
| HNA | N | CA | HAA | 180.0° | 59.9° |
| O | C | CA | HA | 125.2° | 119.8° |
| O | C | CA | HAA | 114.8° | 120.3° |
| O | C | N3S | S | 5.0° | 0.1° |
| O | C | N3S | HN3S | 175.0° | 180.0° |
| O5' | S | O2S | O1S | 113.7° | 122.9° |
| O5' | S | O2S | N3S | 112.8° | 114.1° |
| O5' | S | O1S | N3S | 113.0° | 114.1° |
| O5' | S | N3S | HN3S | 110.9° | 115.0° |
| S | O5' | C5' | C4' | 124.6° | 180.0° |
| S | O5' | C5' | H5' | 115.4° | 60.0° |
| S | O5' | C5' | H5'A | 4.6° | 60.0° |
| O2S | S | O1S | N3S | 133.4° | 123.0° |
| O2S | S | N3S | HN3S | 1.9° | 131.4° |
| O2S | S | O5' | C5' | 65.7° | 171.5° |
| N1 | C2 | H2 | N3 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.1° | 0.0° |
| C2 | N1 | C6 | C5 | 0.4° | 0.0° |
| C2 | N1 | C6 | N6 | 179.9° | 180.0° |
| H2 | C2 | N3 | C4 | 179.9° | 180.0° |
| H2 | C2 | N1 | C6 | 179.8° | 180.0° |
| C2 | N3 | C4 | C5 | 0.1° | 0.0° |
| N3 | C2 | N1 | C6 | 0.3° | 0.0° |
| C2 | N3 | C4 | N9 | 180.0° | 180.0° |
| N3 | C4 | C5 | N9 | 179.9° | 180.0° |
| N3 | C4 | C5 | C6 | 0.2° | 0.0° |
| N3 | C4 | C5 | N7 | 179.7° | 180.0° |
| N3 | C4 | N9 | C8 | 179.7° | 180.0° |
| N3 | C4 | N9 | C1' | 0.8° | 0.1° |
| C4 | C5 | C6 | N7 | 179.8° | 180.0° |
| C4 | C5 | C6 | N1 | 0.3° | 0.0° |
| C4 | C5 | C6 | N6 | 179.8° | 180.0° |
| C4 | C5 | N7 | C8 | 0.2° | 0.0° |
| C5 | C4 | N9 | C8 | 0.2° | 0.0° |
| C5 | C4 | N9 | C1' | 179.2° | 180.0° |
| C5 | C6 | N1 | N6 | 179.5° | 180.0° |
| C5 | C6 | N6 | HN6 | 179.4° | 0.0° |
| C5 | C6 | N6 | HN6A | 59.4° | 180.0° |
| C6 | C5 | N7 | C8 | 180.0° | 180.0° |
| C6 | C5 | C4 | N9 | 179.9° | 180.0° |
| N1 | C6 | N6 | HN6 | 0.0° | 180.0° |
| N1 | C6 | N6 | HN6A | 120.0° | 0.0° |
| N1 | C6 | C5 | N7 | 179.5° | 180.0° |
| C6 | N6 | HN6 | HN6A | 120.0° | 180.0° |
| N6 | C6 | C5 | N7 | 0.0° | 0.0° |
| C5 | N7 | C8 | N9 | 0.1° | 0.0° |
| C5 | N7 | C8 | H8 | 179.9° | 180.0° |
| N7 | C5 | C4 | N9 | 0.3° | 0.0° |
| N7 | C8 | N9 | H8 | 180.0° | 180.0° |
| N7 | C8 | N9 | C4 | 0.1° | 0.0° |
| N7 | C8 | N9 | C1' | 178.9° | 179.9° |
| C8 | N9 | C4 | C1' | 178.9° | 179.9° |
| C8 | N9 | C1' | C2' | 71.6° | 95.1° |
| C8 | N9 | C1' | H1' | 168.4° | 142.1° |
| C8 | N9 | C1' | O4' | 45.7° | 19.0° |
| H8 | C8 | N9 | C4 | 179.9° | 180.0° |
| H8 | C8 | N9 | C1' | 1.1° | 0.1° |
| C4 | N9 | C1' | C2' | 109.6° | 85.0° |
| C4 | N9 | C1' | H1' | 10.3° | 37.8° |
| C4 | N9 | C1' | O4' | 133.0° | 160.9° |
| N9 | C1' | C2' | H1' | 116.8° | 122.8° |
| N9 | C1' | C2' | O4' | 120.5° | 118.5° |
| N9 | C1' | H1' | O4' | 120.1° | 123.0° |
| N9 | C1' | C2' | O2' | 141.3° | 86.3° |
| N9 | C1' | C2' | H2' | 22.0° | 37.3° |
| N9 | C1' | C2' | C3' | 97.8° | 155.5° |
| N9 | C1' | O4' | C4' | 112.1° | 158.5° |
| C | CA | HA | HAA | 118.6° | 119.9° |
| CA | C | N3S | S | 174.6° | 179.7° |
| CA | C | N3S | HN3S | 5.4° | 0.2° |
| C2' | C1' | H1' | O4' | 117.0° | 114.2° |
| C1' | C2' | O2' | H2' | 118.7° | 123.6° |
| C1' | C2' | O2' | C3' | 121.4° | 112.7° |
| C1' | C2' | H2' | C3' | 120.0° | 112.7° |
| C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
| C1' | C2' | C3' | O3' | 163.6° | 97.8° |
| C1' | C2' | C3' | C4' | 23.4° | 20.9° |
| C2' | C1' | O4' | C4' | 11.2° | 40.1° |
| C1' | C2' | C3' | H16 | 98.3° | 139.7° |
| H1' | C1' | C2' | O2' | 24.6° | 36.5° |
| H1' | C1' | C2' | H2' | 94.7° | 160.1° |
| H1' | C1' | C2' | C3' | 145.4° | 81.6° |
| H1' | C1' | O4' | C4' | 131.1° | 78.6° |
| O1S | S | N3S | HN3S | 135.9° | 1.5° |
| O1S | S | O5' | C5' | 173.3° | 38.6° |
| O2' | C2' | H2' | C3' | 119.4° | 123.7° |
| O2' | C2' | C3' | O3' | 41.7° | 20.4° |
| O2' | C2' | C3' | C4' | 98.5° | 139.1° |
| O2' | C2' | C1' | O4' | 98.2° | 155.2° |
| O2' | C2' | C3' | H16 | 139.8° | 102.1° |
| H2' | C2' | O2' | HO2' | 61.3° | 56.4° |
| H2' | C2' | C3' | O3' | 77.6° | 144.0° |
| H2' | C2' | C3' | C4' | 142.2° | 97.3° |
| H2' | C2' | C1' | O4' | 142.5° | 81.2° |
| H2' | C2' | C3' | H16 | 20.4° | 21.5° |
| HO2' | O2' | C2' | C3' | 58.6° | 67.3° |
| C2' | C3' | O3' | C4' | 131.0° | 114.8° |
| C2' | C3' | O3' | H16 | 115.3° | 122.5° |
| C2' | C3' | C4' | H16 | 122.8° | 118.7° |
| C2' | C3' | C4' | O4' | 16.5° | 2.0° |
| C2' | C3' | C4' | H4' | 98.9° | 117.4° |
| C3' | C2' | C1' | O4' | 22.7° | 37.0° |
| C2' | C3' | C4' | C5' | 160.3° | 121.5° |
| C2' | C3' | O3' | H17 | 180.0° | 61.5° |
| O3' | C3' | C4' | H16 | 97.6° | 122.6° |
| O3' | C3' | C4' | O4' | 156.1° | 120.7° |
| O3' | C3' | C4' | H4' | 40.7° | 1.3° |
| O3' | C3' | C4' | C5' | 60.1° | 119.9° |
| N3S | S | O5' | C5' | 53.6° | 75.0° |
| C3' | C4' | O4' | H4' | 112.8° | 119.4° |
| C3' | C4' | O4' | C5' | 144.9° | 119.5° |
| C3' | C4' | H4' | C5' | 122.2° | 121.1° |
| C3' | C4' | O4' | C1' | 3.5° | 26.5° |
| C3' | C4' | C5' | H5' | 169.3° | 55.0° |
| C3' | C4' | C5' | H5'A | 49.3° | 65.0° |
| C3' | C4' | C5' | O5' | 70.6° | 175.0° |
| C4' | C3' | O3' | H17 | 49.0° | 176.3° |
| O4' | C4' | H4' | C5' | 120.4° | 121.1° |
| O4' | C4' | C5' | H5' | 49.4° | 172.9° |
| O4' | C4' | C5' | H5'A | 169.4° | 52.8° |
| O4' | C4' | C5' | O5' | 70.7° | 67.2° |
| O4' | C4' | C3' | H16 | 106.3° | 116.7° |
| H4' | C4' | O4' | C1' | 109.3° | 92.9° |
| H4' | C4' | C5' | H5' | 62.0° | 66.1° |
| H4' | C4' | C5' | H5'A | 58.0° | 173.9° |
| H4' | C4' | C5' | O5' | 177.9° | 53.9° |
| H4' | C4' | C3' | H16 | 138.3° | 123.9° |
| C1' | O4' | C4' | C5' | 148.4° | 145.9° |
| C4' | C5' | H5' | H5'A | 121.6° | 120.0° |
| C4' | C5' | H5' | O5' | 116.8° | 120.0° |
| C4' | C5' | H5'A | O5' | 116.8° | 120.0° |
| C5' | C4' | C3' | H16 | 37.6° | 2.7° |
| H5' | C5' | H5'A | O5' | 121.6° | 120.0° |
| H16 | C3' | O3' | H17 | 64.8° | 61.1° |
