G4P
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| PB | O1B | doub | 1.48Å | 1.47Å | |
| PB | O2B | sing | 1.61Å | 1.48Å | |
| PB | O3B | sing | 1.61Å | 1.53Å | |
| PB | O3A | sing | 1.61Å | 1.68Å | |
| O2B | HOB2 | sing | 0.97Å | 0.95Å | |
| O3B | HOB3 | sing | 0.97Å | 0.95Å | |
| O3A | PA | sing | 1.61Å | 1.60Å | |
| PA | O1A | doub | 1.48Å | 1.48Å | |
| PA | O2A | sing | 1.61Å | 1.49Å | |
| PA | O5' | sing | 1.61Å | 1.58Å | |
| O2A | HOA2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.40Å | |
| C5' | C4' | sing | 1.53Å | 1.55Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.46Å | |
| C4' | C3' | sing | 1.55Å | 1.60Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.40Å | |
| C3' | O3' | sing | 1.43Å | 1.45Å | |
| C3' | C2' | sing | 1.55Å | 1.55Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | PC | sing | 1.61Å | 1.37Å | |
| C2' | O2' | sing | 1.43Å | 1.44Å | |
| C2' | C1' | sing | 1.54Å | 1.48Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N9 | sing | 1.47Å | 1.51Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N9 | C8 | sing | 1.36Å | 1.38Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.40Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N7 | C5 | sing | 1.36Å | 1.36Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.45Å | |
| C5 | C4 | doub | 1.40Å | 1.40Å | Aromatic |
| C6 | O6 | doub | 1.22Å | 1.21Å | |
| C6 | N1 | sing | 1.35Å | 1.42Å | |
| N1 | C2 | sing | 1.36Å | 1.39Å | |
| N1 | HN1 | sing | 0.97Å | 1.00Å | |
| C2 | N2 | sing | 1.37Å | 1.32Å | |
| C2 | N3 | doub | 1.31Å | 1.39Å | |
| N2 | HN21 | sing | 0.97Å | 1.00Å | |
| N2 | HN22 | sing | 0.97Å | 1.00Å | |
| N3 | C4 | sing | 1.34Å | 1.38Å | |
| PC | O1C | doub | 1.48Å | 1.50Å | |
| PC | O2C | sing | 1.61Å | 1.49Å | |
| PC | O3C | sing | 1.61Å | 1.68Å | |
| O2C | H2C | sing | 0.97Å | 0.95Å | |
| O3C | PD | sing | 1.61Å | 1.73Å | |
| PD | O1D | doub | 1.48Å | 1.49Å | |
| PD | O2D | sing | 1.61Å | 1.51Å | |
| PD | O3D | sing | 1.61Å | 1.57Å | |
| O2D | H2D | sing | 0.97Å | 0.95Å | |
| O3D | H3D | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1B | PB | O2B | 120.5° | 109.5° |
| O1B | PB | O3B | 117.5° | 109.5° |
| O1B | PB | O3A | 105.5° | 109.5° |
| O2B | PB | O3B | 97.3° | 109.4° |
| O2B | PB | O3A | 100.9° | 109.5° |
| PB | O2B | HOB2 | 109.5° | 106.9° |
| O3B | PB | O3A | 114.3° | 109.5° |
| PB | O3B | HOB3 | 109.5° | 106.8° |
| PB | O3A | PA | 122.1° | 106.8° |
| O3A | PA | O1A | 94.6° | 109.5° |
| O3A | PA | O2A | 118.7° | 109.5° |
| O3A | PA | O5' | 100.1° | 109.4° |
| O1A | PA | O2A | 117.3° | 109.5° |
| O1A | PA | O5' | 105.6° | 109.5° |
| O2A | PA | O5' | 117.0° | 109.4° |
| PA | O2A | HOA2 | 109.5° | 106.8° |
| PA | O5' | C5' | 127.8° | 106.8° |
| O5' | C5' | C4' | 109.5° | 109.5° |
| O5' | C5' | H5' | 109.5° | 109.5° |
| O5' | C5' | H5'' | 109.5° | 109.5° |
| C4' | C5' | H5' | 109.5° | 109.5° |
| C4' | C5' | H5'' | 109.5° | 109.5° |
| C5' | C4' | O4' | 115.7° | 110.4° |
| C5' | C4' | C3' | 117.4° | 110.5° |
| C5' | C4' | H4' | 96.6° | 110.4° |
| H5' | C5' | H5'' | 109.4° | 109.4° |
| O4' | C4' | C3' | 100.7° | 104.8° |
| O4' | C4' | H4' | 114.6° | 110.4° |
| C4' | O4' | C1' | 116.0° | 105.3° |
| C3' | C4' | H4' | 112.7° | 110.3° |
| C4' | C3' | O3' | 106.8° | 110.5° |
| C4' | C3' | C2' | 107.8° | 104.1° |
| C4' | C3' | H3' | 112.6° | 110.5° |
| O4' | C1' | C2' | 109.8° | 104.9° |
| O4' | C1' | N9 | 109.2° | 110.4° |
| O4' | C1' | H1' | 110.9° | 110.4° |
| O3' | C3' | C2' | 110.2° | 110.6° |
| O3' | C3' | H3' | 110.2° | 110.5° |
| C3' | O3' | PC | 154.3° | 106.8° |
| C2' | C3' | H3' | 109.3° | 110.5° |
| C3' | C2' | O2' | 111.6° | 110.5° |
| C3' | C2' | C1' | 104.8° | 104.0° |
| C3' | C2' | H2' | 111.5° | 110.5° |
| O3' | PC | O1C | 118.5° | 109.5° |
| O3' | PC | O2C | 101.8° | 109.5° |
| O3' | PC | O3C | 97.5° | 109.4° |
| O2' | C2' | C1' | 110.5° | 110.8° |
| O2' | C2' | H2' | 105.9° | 110.4° |
| C2' | O2' | HO2' | 109.5° | 106.8° |
| C1' | C2' | H2' | 112.6° | 110.5° |
| C2' | C1' | N9 | 113.3° | 110.4° |
| C2' | C1' | H1' | 106.5° | 110.4° |
| N9 | C1' | H1' | 107.1° | 110.3° |
| C1' | N9 | C8 | 134.3° | 126.2° |
| C1' | N9 | C4 | 120.6° | 126.3° |
| C8 | N9 | C4 | 105.1° | 107.5° |
| N9 | C8 | N7 | 113.8° | 109.8° |
| N9 | C8 | H8 | 123.1° | 125.1° |
| N9 | C4 | C5 | 105.1° | 106.1° |
| N9 | C4 | N3 | 125.0° | 134.2° |
| N7 | C8 | H8 | 123.1° | 125.1° |
| C8 | N7 | C5 | 105.4° | 109.3° |
| N7 | C5 | C6 | 133.0° | 134.1° |
| N7 | C5 | C4 | 110.6° | 107.2° |
| C6 | C5 | C4 | 116.4° | 118.6° |
| C5 | C6 | O6 | 127.9° | 120.9° |
| C5 | C6 | N1 | 114.8° | 118.4° |
| C5 | C4 | N3 | 129.9° | 119.7° |
| O6 | C6 | N1 | 117.3° | 120.8° |
| C6 | N1 | C2 | 124.5° | 120.3° |
| C6 | N1 | HN1 | 117.8° | 119.9° |
| C2 | N1 | HN1 | 117.8° | 119.8° |
| N1 | C2 | N2 | 116.8° | 119.1° |
| N1 | C2 | N3 | 122.1° | 121.8° |
| N2 | C2 | N3 | 121.1° | 119.1° |
| C2 | N2 | HN21 | 125.3° | 120.0° |
| C2 | N2 | HN22 | 109.4° | 119.9° |
| C2 | N3 | C4 | 112.4° | 121.2° |
| HN21 | N2 | HN22 | 125.3° | 120.0° |
| O1C | PC | O2C | 118.5° | 109.5° |
| O1C | PC | O3C | 98.4° | 109.5° |
| O2C | PC | O3C | 121.4° | 109.5° |
| PC | O2C | H2C | 109.5° | 106.9° |
| PC | O3C | PD | 122.3° | 106.8° |
| O3C | PD | O1D | 106.4° | 109.5° |
| O3C | PD | O2D | 100.8° | 109.5° |
| O3C | PD | O3D | 115.8° | 109.5° |
| O1D | PD | O2D | 117.2° | 109.5° |
| O1D | PD | O3D | 117.7° | 109.5° |
| O2D | PD | O3D | 97.9° | 109.5° |
| PD | O2D | H2D | 109.5° | 106.8° |
| PD | O3D | H3D | 109.5° | 106.7° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1B | PB | O2B | O3B | 128.1° | 120.0° |
| O1B | PB | O2B | O3A | 115.4° | 120.0° |
| O1B | PB | O3B | O3A | 124.4° | 120.0° |
| O1B | PB | O2B | HOB2 | 45.7° | 60.0° |
| O1B | PB | O3B | HOB3 | 129.3° | 179.9° |
| O1B | PB | O3A | PA | 52.8° | 45.0° |
| O2B | PB | O3B | O3A | 105.5° | 120.0° |
| O2B | PB | O3B | HOB3 | 0.8° | 60.1° |
| O2B | PB | O3A | PA | 178.9° | 165.0° |
| O3B | PB | O2B | HOB2 | 173.7° | 60.0° |
| O3B | PB | O3A | PA | 77.8° | 75.0° |
| O3A | PB | O2B | HOB2 | 69.7° | 180.0° |
| O3A | PB | O3B | HOB3 | 106.4° | 59.9° |
| PB | O3A | PA | O1A | 120.4° | 40.0° |
| PB | O3A | PA | O2A | 4.3° | 80.0° |
| PB | O3A | PA | O5' | 132.8° | 160.0° |
| O3A | PA | O1A | O2A | 125.7° | 120.0° |
| O3A | PA | O1A | O5' | 101.9° | 120.0° |
| O3A | PA | O2A | O5' | 120.3° | 119.9° |
| O3A | PA | O2A | HOA2 | 168.9° | 59.9° |
| O3A | PA | O5' | C5' | 83.4° | 175.0° |
| O1A | PA | O2A | O5' | 127.0° | 120.0° |
| O1A | PA | O2A | HOA2 | 56.1° | 179.9° |
| O1A | PA | O5' | C5' | 178.9° | 55.0° |
| O2A | PA | O5' | C5' | 46.3° | 65.0° |
| O5' | PA | O2A | HOA2 | 70.9° | 60.0° |
| PA | O5' | C5' | C4' | 142.4° | 180.0° |
| PA | O5' | C5' | H5' | 97.6° | 60.0° |
| PA | O5' | C5' | H5'' | 22.4° | 60.0° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'' | 120.0° | 120.0° |
| O5' | C5' | H5' | H5'' | 120.0° | 120.0° |
| O5' | C5' | C4' | O4' | 78.9° | 66.5° |
| O5' | C5' | C4' | C3' | 39.9° | 178.1° |
| O5' | C5' | C4' | H4' | 159.7° | 55.8° |
| C4' | C5' | H5' | H5'' | 120.0° | 120.0° |
| C5' | C4' | O4' | C3' | 127.7° | 118.9° |
| C5' | C4' | O4' | H4' | 111.1° | 122.3° |
| C5' | C4' | C3' | H4' | 111.0° | 122.3° |
| C5' | C4' | O4' | C1' | 125.0° | 159.4° |
| C5' | C4' | C3' | O3' | 122.9° | 98.4° |
| C5' | C4' | C3' | C2' | 118.7° | 142.9° |
| C5' | C4' | C3' | H3' | 1.9° | 24.2° |
| H5' | C5' | C4' | O4' | 41.1° | 173.5° |
| H5' | C5' | C4' | C3' | 159.9° | 58.1° |
| H5' | C5' | C4' | H4' | 80.3° | 64.2° |
| H5'' | C5' | C4' | O4' | 161.1° | 53.5° |
| H5'' | C5' | C4' | C3' | 80.2° | 61.9° |
| H5'' | C5' | C4' | H4' | 39.7° | 175.8° |
| O4' | C4' | C3' | H4' | 122.5° | 118.8° |
| O4' | C4' | C3' | O3' | 110.5° | 142.8° |
| O4' | C4' | C3' | C2' | 7.8° | 24.1° |
| O4' | C4' | C3' | H3' | 128.4° | 94.6° |
| C4' | O4' | C1' | C2' | 3.9° | 40.5° |
| C4' | O4' | C1' | N9 | 128.6° | 159.4° |
| C4' | O4' | C1' | H1' | 113.6° | 78.4° |
| C3' | C4' | O4' | C1' | 2.6° | 40.5° |
| C4' | C3' | O3' | C2' | 116.8° | 114.7° |
| C4' | C3' | O3' | H3' | 122.5° | 122.6° |
| C4' | C3' | C2' | H3' | 122.6° | 118.7° |
| C4' | C3' | O3' | PC | 169.6° | 120.0° |
| C4' | C3' | C2' | O2' | 129.8° | 118.8° |
| C4' | C3' | C2' | C1' | 10.1° | 0.1° |
| C4' | C3' | C2' | H2' | 112.0° | 118.7° |
| H4' | C4' | O4' | C1' | 123.9° | 78.3° |
| H4' | C4' | C3' | O3' | 12.0° | 23.9° |
| H4' | C4' | C3' | C2' | 130.3° | 94.8° |
| H4' | C4' | C3' | H3' | 109.1° | 146.5° |
| O4' | C1' | C2' | C3' | 8.7° | 23.9° |
| O4' | C1' | C2' | O2' | 129.1° | 142.6° |
| O4' | C1' | C2' | N9 | 122.3° | 118.9° |
| O4' | C1' | C2' | H1' | 120.1° | 118.9° |
| O4' | C1' | C2' | H2' | 112.7° | 94.7° |
| O4' | C1' | N9 | H1' | 120.1° | 122.3° |
| O4' | C1' | N9 | C8 | 62.8° | 22.0° |
| O4' | C1' | N9 | C4 | 116.7° | 158.0° |
| O3' | C3' | C2' | H3' | 121.2° | 122.7° |
| O3' | C3' | C2' | O2' | 13.6° | 0.1° |
| O3' | C3' | C2' | C1' | 106.0° | 118.8° |
| O3' | C3' | C2' | H2' | 131.9° | 122.6° |
| C3' | O3' | PC | O1C | 41.9° | 55.0° |
| C3' | O3' | PC | O2C | 173.7° | 65.0° |
| C3' | O3' | PC | O3C | 62.0° | 175.0° |
| C2' | C3' | O3' | PC | 73.7° | 125.3° |
| C3' | C2' | O2' | C1' | 116.2° | 114.7° |
| C3' | C2' | O2' | H2' | 121.5° | 122.6° |
| C3' | C2' | C1' | H2' | 121.4° | 118.6° |
| C3' | C2' | O2' | HO2' | 178.2° | 180.0° |
| C3' | C2' | C1' | N9 | 131.0° | 142.8° |
| C3' | C2' | C1' | H1' | 111.5° | 95.1° |
| H3' | C3' | O3' | PC | 47.0° | 2.6° |
| H3' | C3' | C2' | O2' | 107.6° | 122.5° |
| H3' | C3' | C2' | C1' | 132.7° | 118.5° |
| H3' | C3' | C2' | H2' | 10.6° | 0.0° |
| O3' | PC | O1C | O2C | 123.9° | 120.0° |
| O3' | PC | O1C | O3C | 103.3° | 119.9° |
| O3' | PC | O2C | O3C | 106.4° | 119.9° |
| O3' | PC | O2C | H2C | 177.4° | 59.9° |
| O3' | PC | O3C | PD | 97.9° | 160.0° |
| O2' | C2' | C1' | H2' | 118.2° | 122.7° |
| O2' | C2' | C1' | N9 | 108.6° | 98.5° |
| O2' | C2' | C1' | H1' | 8.9° | 23.6° |
| C1' | C2' | O2' | HO2' | 62.0° | 65.3° |
| C2' | C1' | N9 | H1' | 117.2° | 122.2° |
| C2' | C1' | N9 | C8 | 59.9° | 93.5° |
| C2' | C1' | N9 | C4 | 120.6° | 86.5° |
| H2' | C2' | O2' | HO2' | 60.3° | 57.5° |
| H2' | C2' | C1' | N9 | 9.6° | 24.2° |
| H2' | C2' | C1' | H1' | 127.1° | 146.4° |
| C1' | N9 | C8 | C4 | 179.5° | 180.0° |
| C1' | N9 | C8 | N7 | 179.8° | 180.0° |
| C1' | N9 | C8 | H8 | 0.2° | 0.0° |
| C1' | N9 | C4 | C5 | 179.8° | 180.0° |
| C1' | N9 | C4 | N3 | 0.6° | 0.0° |
| H1' | C1' | N9 | C8 | 177.0° | 144.3° |
| H1' | C1' | N9 | C4 | 3.5° | 35.7° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| N9 | C8 | N7 | C5 | 0.4° | 0.1° |
| C8 | N9 | C4 | C5 | 0.6° | 0.0° |
| C8 | N9 | C4 | N3 | 179.7° | 180.0° |
| C4 | N9 | C8 | N7 | 0.7° | 0.0° |
| C4 | N9 | C8 | H8 | 179.4° | 180.0° |
| N9 | C4 | C5 | N7 | 0.3° | 0.1° |
| N9 | C4 | C5 | C6 | 179.2° | 180.0° |
| N9 | C4 | C5 | N3 | 179.1° | 180.0° |
| N9 | C4 | N3 | C2 | 179.6° | 180.0° |
| C8 | N7 | C5 | C6 | 179.5° | 180.0° |
| C8 | N7 | C5 | C4 | 0.0° | 0.1° |
| H8 | C8 | N7 | C5 | 179.6° | 180.0° |
| N7 | C5 | C6 | C4 | 179.4° | 179.9° |
| N7 | C5 | C6 | O6 | 0.6° | 0.1° |
| N7 | C5 | C6 | N1 | 179.9° | 179.6° |
| N7 | C5 | C4 | N3 | 179.5° | 179.9° |
| C5 | C6 | O6 | N1 | 179.3° | 179.8° |
| C5 | C6 | N1 | C2 | 0.8° | 0.6° |
| C5 | C6 | N1 | HN1 | 179.2° | 180.0° |
| C6 | C5 | C4 | N3 | 0.1° | 0.0° |
| C4 | C5 | C6 | O6 | 179.9° | 180.0° |
| C4 | C5 | C6 | N1 | 0.6° | 0.2° |
| C5 | C4 | N3 | C2 | 0.6° | 0.0° |
| O6 | C6 | N1 | C2 | 179.8° | 179.7° |
| O6 | C6 | N1 | HN1 | 0.2° | 0.3° |
| C6 | N1 | C2 | HN1 | 180.0° | 179.4° |
| C6 | N1 | C2 | N2 | 179.1° | 179.7° |
| C6 | N1 | C2 | N3 | 0.3° | 0.6° |
| N1 | C2 | N2 | N3 | 179.4° | 179.7° |
| N1 | C2 | N2 | HN21 | 0.0° | 179.7° |
| N1 | C2 | N2 | HN22 | 180.0° | 0.6° |
| N1 | C2 | N3 | C4 | 0.4° | 0.3° |
| HN1 | N1 | C2 | N2 | 0.9° | 0.3° |
| HN1 | N1 | C2 | N3 | 179.7° | 180.0° |
| C2 | N2 | HN21 | HN22 | 180.0° | 179.7° |
| N2 | C2 | N3 | C4 | 179.8° | 180.0° |
| N3 | C2 | N2 | HN21 | 179.4° | 0.0° |
| N3 | C2 | N2 | HN22 | 0.6° | 179.7° |
| O1C | PC | O2C | O3C | 121.8° | 120.1° |
| O1C | PC | O2C | H2C | 50.8° | 180.0° |
| O1C | PC | O3C | PD | 141.7° | 40.0° |
| O2C | PC | O3C | PD | 10.8° | 80.0° |
| O3C | PC | O2C | H2C | 71.0° | 60.0° |
| PC | O3C | PD | O1D | 47.7° | 40.0° |
| PC | O3C | PD | O2D | 170.5° | 80.0° |
| PC | O3C | PD | O3D | 85.1° | 160.0° |
| O3C | PD | O1D | O2D | 111.8° | 120.0° |
| O3C | PD | O1D | O3D | 131.8° | 120.0° |
| O3C | PD | O2D | O3D | 118.3° | 120.0° |
| O3C | PD | O2D | H2D | 81.9° | 59.9° |
| O3C | PD | O3D | H3D | 8.5° | 180.0° |
| O1D | PD | O2D | O3D | 126.8° | 120.0° |
| O1D | PD | O2D | H2D | 33.0° | 180.0° |
| O1D | PD | O3D | H3D | 135.9° | 60.0° |
| O2D | PD | O3D | H3D | 97.6° | 60.0° |
| O3D | PD | O2D | H2D | 159.8° | 60.0° |
