G48
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP1 | P | doub | 1.48Å | 1.46Å | |
P | O5' | sing | 1.61Å | 1.59Å | |
P | OP3 | sing | 1.61Å | 1.48Å | |
C5' | O5' | sing | 1.43Å | 1.41Å | |
C5' | C4' | sing | 1.53Å | 1.50Å | |
C4' | O4' | sing | 1.44Å | 1.45Å | |
C4' | C3' | sing | 1.54Å | 1.52Å | |
O4' | C1' | sing | 1.44Å | 1.42Å | |
O3' | C3' | sing | 1.43Å | 1.41Å | |
C3' | C2' | sing | 1.55Å | 1.52Å | |
C1' | C2' | sing | 1.55Å | 1.52Å | |
C1' | N9 | sing | 1.46Å | 1.46Å | |
O2' | C2' | sing | 1.43Å | 1.42Å | |
O2' | CA' | sing | 1.43Å | 1.42Å | |
CD' | OC' | sing | 1.43Å | 1.45Å | |
C8 | N9 | sing | 1.37Å | 1.38Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.30Å | Aromatic |
CB' | OC' | sing | 1.43Å | 1.46Å | |
CB' | CA' | sing | 1.53Å | 1.51Å | |
N9 | C4 | sing | 1.37Å | 1.36Å | Aromatic |
N7 | C5 | sing | 1.35Å | 1.40Å | Aromatic |
C4 | C5 | doub | 1.40Å | 1.38Å | Aromatic |
C4 | N3 | sing | 1.34Å | 1.35Å | |
C5 | C6 | sing | 1.41Å | 1.44Å | |
N3 | C2 | doub | 1.31Å | 1.32Å | |
C6 | O6 | doub | 1.22Å | 1.23Å | |
C6 | N1 | sing | 1.35Å | 1.39Å | |
C2 | N1 | sing | 1.36Å | 1.38Å | |
C2 | N2 | sing | 1.37Å | 1.34Å | |
P | OP2 | sing | 1.61Å | 1.60Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'' | sing | 1.09Å | 1.10Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C8 | H8 | sing | 1.08Å | 1.08Å | |
N1 | H1 | sing | 0.97Å | 1.00Å | |
N2 | H21 | sing | 0.97Å | 1.00Å | |
N2 | H22 | sing | 0.97Å | 1.00Å | |
CA' | HCA2 | sing | 1.09Å | 1.10Å | |
CA' | HCA1 | sing | 1.09Å | 1.10Å | |
CB' | HCB1 | sing | 1.09Å | 1.10Å | |
CB' | HCB2 | sing | 1.09Å | 1.10Å | |
CD' | HCD1 | sing | 1.09Å | 1.10Å | |
CD' | HCD2 | sing | 1.09Å | 1.10Å | |
CD' | HCD3 | sing | 1.09Å | 1.10Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP1 | P | O5' | 111.5° | 109.5° |
OP1 | P | OP3 | 118.9° | 109.4° |
OP1 | P | OP2 | 103.4° | 109.5° |
O5' | P | OP3 | 108.1° | 109.5° |
P | O5' | C5' | 120.2° | 123.0° |
O5' | P | OP2 | 100.7° | 109.5° |
OP3 | P | OP2 | 112.7° | 109.5° |
P | OP3 | HOP3 | 109.5° | 113.9° |
O5' | C5' | C4' | 110.3° | 109.4° |
O5' | C5' | H5' | 109.3° | 109.5° |
O5' | C5' | H5'' | 109.2° | 109.5° |
C5' | C4' | O4' | 110.1° | 109.9° |
C5' | C4' | C3' | 116.5° | 109.9° |
C4' | C5' | H5' | 109.2° | 109.5° |
C4' | C5' | H5'' | 109.3° | 109.5° |
C5' | C4' | H4' | 108.7° | 109.9° |
O4' | C4' | C3' | 103.4° | 107.3° |
C4' | O4' | C1' | 109.7° | 107.0° |
O4' | C4' | H4' | 109.4° | 109.9° |
C4' | C3' | O3' | 113.0° | 110.5° |
C4' | C3' | C2' | 101.7° | 104.2° |
C3' | C4' | H4' | 108.5° | 110.0° |
C4' | C3' | H3' | 108.9° | 110.5° |
O4' | C1' | C2' | 106.8° | 103.5° |
O4' | C1' | N9 | 108.1° | 110.6° |
O4' | C1' | H1' | 111.9° | 110.6° |
O3' | C3' | C2' | 113.4° | 110.5° |
O3' | C3' | H3' | 110.5° | 110.5° |
C3' | O3' | HO3' | 109.5° | 114.0° |
C3' | C2' | C1' | 100.6° | 102.1° |
C3' | C2' | O2' | 110.3° | 110.9° |
C2' | C3' | H3' | 108.9° | 110.5° |
C3' | C2' | H2' | 111.0° | 110.9° |
C2' | C1' | N9 | 108.3° | 110.6° |
C1' | C2' | O2' | 110.9° | 110.9° |
C1' | C2' | H2' | 110.9° | 110.9° |
C2' | C1' | H1' | 110.3° | 110.6° |
C1' | N9 | C8 | 128.0° | 126.3° |
C1' | N9 | C4 | 125.2° | 126.3° |
N9 | C1' | H1' | 111.3° | 110.6° |
C2' | O2' | CA' | 116.4° | 114.0° |
O2' | C2' | H2' | 112.5° | 110.8° |
O2' | CA' | CB' | 110.3° | 109.5° |
O2' | CA' | HCA2 | 109.2° | 109.5° |
O2' | CA' | HCA1 | 109.2° | 109.5° |
CD' | OC' | CB' | 110.3° | 114.0° |
OC' | CD' | HCD1 | 109.5° | 109.5° |
OC' | CD' | HCD2 | 109.4° | 109.4° |
OC' | CD' | HCD3 | 109.5° | 109.5° |
N9 | C8 | N7 | 112.8° | 109.8° |
C8 | N9 | C4 | 106.8° | 107.5° |
N9 | C8 | H8 | 123.6° | 125.1° |
C8 | N7 | C5 | 104.1° | 109.3° |
N7 | C8 | H8 | 123.6° | 125.1° |
OC' | CB' | CA' | 111.5° | 109.5° |
OC' | CB' | HCB1 | 109.0° | 109.4° |
OC' | CB' | HCB2 | 109.0° | 109.4° |
CB' | CA' | HCA2 | 109.3° | 109.5° |
CB' | CA' | HCA1 | 109.3° | 109.4° |
CA' | CB' | HCB1 | 109.0° | 109.5° |
CA' | CB' | HCB2 | 108.9° | 109.5° |
N9 | C4 | C5 | 105.6° | 106.1° |
N9 | C4 | N3 | 125.5° | 134.2° |
N7 | C5 | C4 | 110.7° | 107.3° |
N7 | C5 | C6 | 131.2° | 134.1° |
C5 | C4 | N3 | 128.9° | 119.7° |
C4 | C5 | C6 | 118.0° | 118.6° |
C4 | N3 | C2 | 112.5° | 121.2° |
C5 | C6 | O6 | 129.3° | 120.8° |
C5 | C6 | N1 | 111.6° | 118.4° |
N3 | C2 | N1 | 124.0° | 121.9° |
N3 | C2 | N2 | 119.2° | 119.0° |
O6 | C6 | N1 | 119.2° | 120.8° |
C6 | N1 | C2 | 125.0° | 120.3° |
C6 | N1 | H1 | 117.5° | 119.8° |
N1 | C2 | N2 | 116.8° | 119.1° |
C2 | N1 | H1 | 117.5° | 119.9° |
C2 | N2 | H21 | 120.0° | 120.0° |
C2 | N2 | H22 | 120.0° | 120.0° |
P | OP2 | HOP2 | 109.5° | 114.0° |
H5' | C5' | H5'' | 109.5° | 109.5° |
H21 | N2 | H22 | 120.0° | 120.0° |
HCA2 | CA' | HCA1 | 109.5° | 109.5° |
HCB1 | CB' | HCB2 | 109.5° | 109.5° |
HCD1 | CD' | HCD2 | 109.5° | 109.4° |
HCD1 | CD' | HCD3 | 109.5° | 109.5° |
HCD2 | CD' | HCD3 | 109.5° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP1 | P | O5' | OP3 | 132.4° | 120.0° |
OP1 | P | O5' | OP2 | 109.2° | 120.0° |
OP1 | P | OP3 | OP2 | 121.2° | 120.0° |
OP1 | P | O5' | C5' | 52.6° | 55.0° |
OP1 | P | OP3 | HOP3 | 0.0° | 180.0° |
OP1 | P | OP2 | HOP2 | 0.0° | 60.0° |
O5' | P | OP3 | OP2 | 110.4° | 120.0° |
P | O5' | C5' | C4' | 175.5° | 180.0° |
O5' | P | OP3 | HOP3 | 128.3° | 59.9° |
P | O5' | C5' | H5' | 64.4° | 60.0° |
P | O5' | C5' | H5'' | 55.4° | 60.0° |
O5' | P | OP2 | HOP2 | 115.4° | 180.0° |
OP3 | P | O5' | C5' | 175.0° | 65.0° |
OP3 | P | OP2 | HOP2 | 129.6° | 60.0° |
O5' | C5' | C4' | H5' | 120.1° | 120.0° |
O5' | C5' | C4' | H5'' | 120.1° | 120.0° |
O5' | C5' | C4' | O4' | 72.8° | 66.5° |
O5' | C5' | C4' | C3' | 44.4° | 175.7° |
C5' | O5' | P | OP2 | 56.5° | 175.0° |
O5' | C5' | H5' | H5'' | 119.6° | 120.0° |
O5' | C5' | C4' | H4' | 167.3° | 54.5° |
C5' | C4' | O4' | C3' | 125.1° | 119.4° |
C5' | C4' | O4' | H4' | 119.4° | 121.0° |
C5' | C4' | C3' | H4' | 123.1° | 121.1° |
C5' | C4' | O4' | C1' | 147.0° | 145.9° |
C5' | C4' | C3' | O3' | 78.2° | 119.9° |
C5' | C4' | C3' | C2' | 159.9° | 121.4° |
C4' | C5' | H5' | H5'' | 119.6° | 120.0° |
C5' | C4' | C3' | H3' | 45.0° | 2.8° |
O4' | C4' | C3' | H4' | 116.1° | 119.5° |
O4' | C4' | C3' | O3' | 160.9° | 120.7° |
O4' | C4' | C3' | C2' | 39.0° | 2.0° |
C4' | O4' | C1' | C2' | 4.2° | 40.1° |
C4' | O4' | C1' | N9 | 112.1° | 158.6° |
O4' | C4' | C5' | H5' | 167.0° | 53.5° |
O4' | C4' | C5' | H5'' | 47.3° | 173.5° |
O4' | C4' | C3' | H3' | 75.9° | 116.6° |
C4' | O4' | C1' | H1' | 125.0° | 78.4° |
C3' | C4' | O4' | C1' | 21.9° | 26.5° |
C4' | C3' | O3' | C2' | 115.1° | 114.8° |
C4' | C3' | O3' | H3' | 122.3° | 122.6° |
C4' | C3' | C2' | H3' | 114.9° | 118.7° |
C4' | C3' | C2' | C1' | 40.4° | 20.9° |
C4' | C3' | C2' | O2' | 76.8° | 139.1° |
C3' | C4' | C5' | H5' | 75.7° | 64.3° |
C3' | C4' | C5' | H5'' | 164.5° | 55.7° |
C4' | C3' | O3' | HO3' | 180.0° | 61.5° |
C4' | C3' | C2' | H2' | 157.8° | 97.3° |
O4' | C1' | C2' | C3' | 28.3° | 37.0° |
O4' | C1' | C2' | N9 | 116.2° | 118.5° |
O4' | C1' | C2' | H1' | 121.8° | 118.5° |
O4' | C1' | N9 | H1' | 123.3° | 123.0° |
O4' | C1' | C2' | O2' | 88.4° | 155.2° |
O4' | C1' | N9 | C8 | 20.0° | 23.9° |
O4' | C1' | N9 | C4 | 161.5° | 156.5° |
C1' | O4' | C4' | H4' | 93.6° | 93.1° |
O4' | C1' | C2' | H2' | 145.8° | 81.2° |
O3' | C3' | C2' | H3' | 123.4° | 122.7° |
O3' | C3' | C2' | C1' | 162.1° | 97.8° |
O3' | C3' | C2' | O2' | 44.9° | 20.4° |
O3' | C3' | C4' | H4' | 44.8° | 1.2° |
O3' | C3' | C2' | H2' | 80.5° | 144.0° |
C3' | C2' | C1' | O2' | 116.7° | 118.2° |
C3' | C2' | C1' | H2' | 117.5° | 118.2° |
C3' | C2' | C1' | N9 | 87.9° | 155.6° |
C3' | C2' | O2' | H2' | 124.5° | 123.7° |
C3' | C2' | O2' | CA' | 178.8° | 91.5° |
C2' | C3' | C4' | H4' | 77.1° | 117.5° |
C2' | C3' | O3' | HO3' | 64.9° | 176.2° |
C3' | C2' | C1' | H1' | 150.0° | 81.5° |
C2' | C1' | N9 | H1' | 121.4° | 122.9° |
C1' | C2' | O2' | H2' | 124.9° | 123.6° |
C1' | C2' | O2' | CA' | 70.6° | 155.8° |
C2' | C1' | N9 | C8 | 95.3° | 90.2° |
C2' | C1' | N9 | C4 | 83.2° | 89.4° |
C1' | C2' | C3' | H3' | 74.5° | 139.5° |
N9 | C1' | C2' | O2' | 155.4° | 86.2° |
C1' | N9 | C8 | C4 | 178.7° | 179.7° |
C1' | N9 | C8 | N7 | 178.7° | 180.0° |
C1' | N9 | C4 | C5 | 178.9° | 179.8° |
C1' | N9 | C4 | N3 | 0.4° | 0.8° |
N9 | C1' | C2' | H2' | 29.6° | 37.4° |
C1' | N9 | C8 | H8 | 1.3° | 0.0° |
C2' | O2' | CA' | CB' | 172.2° | 180.0° |
O2' | C2' | C3' | H3' | 168.3° | 102.2° |
O2' | C2' | C1' | H1' | 33.4° | 36.7° |
C2' | O2' | CA' | HCA2 | 67.7° | 60.0° |
C2' | O2' | CA' | HCA1 | 52.0° | 60.0° |
O2' | CA' | CB' | OC' | 60.2° | 65.0° |
O2' | CA' | CB' | HCA2 | 120.1° | 120.0° |
O2' | CA' | CB' | HCA1 | 120.1° | 120.0° |
CA' | O2' | C2' | H2' | 54.2° | 32.2° |
O2' | CA' | HCA2 | HCA1 | 119.6° | 120.0° |
O2' | CA' | CB' | HCB1 | 179.5° | 175.0° |
O2' | CA' | CB' | HCB2 | 60.1° | 55.0° |
CD' | OC' | CB' | CA' | 168.4° | 180.0° |
CD' | OC' | CB' | HCB1 | 71.3° | 60.0° |
CD' | OC' | CB' | HCB2 | 48.1° | 60.0° |
OC' | CD' | HCD1 | HCD2 | 120.0° | 120.0° |
OC' | CD' | HCD1 | HCD3 | 120.0° | 120.1° |
OC' | CD' | HCD2 | HCD3 | 120.0° | 120.0° |
N9 | C8 | N7 | H8 | 180.0° | 180.0° |
N9 | C8 | N7 | C5 | 0.2° | 0.0° |
C8 | N9 | C4 | C5 | 0.1° | 0.4° |
C8 | N9 | C4 | N3 | 178.3° | 179.5° |
C8 | N9 | C1' | H1' | 143.3° | 146.8° |
N7 | C8 | N9 | C4 | 0.1° | 0.3° |
C8 | N7 | C5 | C4 | 0.3° | 0.3° |
C8 | N7 | C5 | C6 | 179.4° | 179.9° |
OC' | CB' | CA' | HCB1 | 120.3° | 120.0° |
OC' | CB' | CA' | HCB2 | 120.3° | 120.0° |
OC' | CB' | CA' | HCA2 | 179.6° | 55.0° |
OC' | CB' | CA' | HCA1 | 59.9° | 175.0° |
OC' | CB' | HCB1 | HCB2 | 119.1° | 120.0° |
CB' | OC' | CD' | HCD1 | 180.0° | 60.0° |
CB' | OC' | CD' | HCD2 | 60.0° | 60.0° |
CB' | OC' | CD' | HCD3 | 60.0° | 180.0° |
CB' | CA' | HCA2 | HCA1 | 119.6° | 120.0° |
CA' | CB' | HCB1 | HCB2 | 119.1° | 120.1° |
N9 | C4 | C5 | N7 | 0.3° | 0.5° |
N9 | C4 | C5 | N3 | 178.4° | 179.2° |
N9 | C4 | C5 | C6 | 179.5° | 179.9° |
N9 | C4 | N3 | C2 | 176.9° | 179.5° |
C4 | N9 | C1' | H1' | 38.2° | 33.5° |
C4 | N9 | C8 | H8 | 179.9° | 179.7° |
N7 | C5 | C4 | C6 | 179.2° | 179.7° |
N7 | C5 | C4 | N3 | 178.1° | 179.7° |
N7 | C5 | C6 | O6 | 2.4° | 0.1° |
N7 | C5 | C6 | N1 | 177.5° | 179.9° |
C5 | N7 | C8 | H8 | 179.8° | 180.0° |
C5 | C4 | N3 | C2 | 1.2° | 0.6° |
C4 | C5 | C6 | O6 | 178.6° | 179.7° |
C4 | C5 | C6 | N1 | 1.5° | 0.3° |
N3 | C4 | C5 | C6 | 1.1° | 0.6° |
C4 | N3 | C2 | N1 | 2.9° | 0.2° |
C4 | N3 | C2 | N2 | 175.9° | 179.7° |
C5 | C6 | O6 | N1 | 179.8° | 180.0° |
C5 | C6 | N1 | C2 | 0.0° | 0.0° |
C5 | C6 | N1 | H1 | 179.9° | 180.0° |
N3 | C2 | N1 | C6 | 2.5° | 0.1° |
N3 | C2 | N1 | N2 | 178.8° | 179.9° |
N3 | C2 | N1 | H1 | 177.5° | 179.9° |
N3 | C2 | N2 | H21 | 0.0° | 179.9° |
N3 | C2 | N2 | H22 | 180.0° | 0.0° |
O6 | C6 | N1 | C2 | 179.8° | 180.0° |
O6 | C6 | N1 | H1 | 0.2° | 0.0° |
C6 | N1 | C2 | H1 | 180.0° | 180.0° |
C6 | N1 | C2 | N2 | 176.3° | 180.0° |
N1 | C2 | N2 | H21 | 178.9° | 0.0° |
N1 | C2 | N2 | H22 | 1.1° | 180.0° |
N2 | C2 | N1 | H1 | 3.7° | 0.0° |
C2 | N2 | H21 | H22 | 180.0° | 180.0° |
OP2 | P | OP3 | HOP3 | 121.2° | 60.0° |
H5' | C5' | C4' | H4' | 47.2° | 174.5° |
H5'' | C5' | C4' | H4' | 72.5° | 65.4° |
H4' | C4' | C3' | H3' | 168.0° | 123.9° |
H3' | C3' | O3' | HO3' | 57.7° | 61.1° |
H3' | C3' | C2' | H2' | 42.9° | 21.4° |
H2' | C2' | C1' | H1' | 92.5° | 160.3° |
HCA2 | CA' | CB' | HCB1 | 59.4° | 64.9° |
HCA2 | CA' | CB' | HCB2 | 60.0° | 175.0° |
HCA1 | CA' | CB' | HCB1 | 60.4° | 55.1° |
HCA1 | CA' | CB' | HCB2 | 179.8° | 65.0° |
HCD1 | CD' | HCD2 | HCD3 | 120.0° | 120.0° |