G38
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| PA | O1A | doub | 1.48Å | 1.50Å | |
| PA | O2A | sing | 1.61Å | 1.49Å | |
| PA | O3P | sing | 1.61Å | 1.62Å | |
| PA | O5' | sing | 1.61Å | 1.59Å | |
| O2A | H2A | sing | 0.97Å | 0.95Å | |
| O3P | H3P | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.45Å | 1.45Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C3' | C2' | sing | 1.54Å | 1.51Å | |
| C3' | N | sing | 1.47Å | 1.45Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C2' | H2'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2'2 | sing | 1.09Å | 1.10Å | |
| C1' | N9 | sing | 1.46Å | 1.46Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N9 | C8 | sing | 1.36Å | 1.38Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.37Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.30Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N7 | C5 | sing | 1.36Å | 1.39Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.42Å | |
| C5 | C4 | doub | 1.40Å | 1.37Å | Aromatic |
| C6 | O6 | doub | 1.22Å | 1.23Å | |
| C6 | N1 | sing | 1.35Å | 1.39Å | |
| N1 | C2 | sing | 1.36Å | 1.38Å | |
| N1 | HN3 | sing | 0.97Å | 1.00Å | |
| C2 | N2 | sing | 1.37Å | 1.32Å | |
| C2 | N3 | doub | 1.32Å | 1.31Å | |
| N2 | H2N1 | sing | 0.97Å | 1.00Å | |
| N2 | H2N2 | sing | 0.97Å | 1.00Å | |
| N3 | C4 | sing | 1.34Å | 1.35Å | |
| N | HN1 | sing | 1.01Å | 1.00Å | |
| N | HN2 | sing | 1.01Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1A | PA | O2A | 119.4° | 109.5° |
| O1A | PA | O3P | 105.6° | 109.5° |
| O1A | PA | O5' | 109.3° | 109.5° |
| O2A | PA | O3P | 110.0° | 109.4° |
| O2A | PA | O5' | 106.4° | 109.5° |
| PA | O2A | H2A | 109.5° | 106.8° |
| O3P | PA | O5' | 105.4° | 109.5° |
| PA | O3P | H3P | 109.5° | 106.8° |
| PA | O5' | C5' | 120.7° | 106.8° |
| O5' | C5' | C4' | 110.4° | 109.5° |
| O5' | C5' | H5'1 | 109.2° | 109.4° |
| O5' | C5' | H5'2 | 109.0° | 109.5° |
| C4' | C5' | H5'1 | 109.1° | 109.5° |
| C4' | C5' | H5'2 | 109.0° | 109.5° |
| C5' | C4' | O4' | 111.2° | 110.4° |
| C5' | C4' | C3' | 118.0° | 110.7° |
| C5' | C4' | H4' | 100.6° | 110.3° |
| H5'1 | C5' | H5'2 | 110.2° | 109.4° |
| O4' | C4' | C3' | 104.3° | 104.7° |
| O4' | C4' | H4' | 115.3° | 110.4° |
| C4' | O4' | C1' | 109.1° | 105.3° |
| C3' | C4' | H4' | 108.0° | 110.3° |
| C4' | C3' | C2' | 99.6° | 104.2° |
| C4' | C3' | N | 111.2° | 110.5° |
| C4' | C3' | H3' | 115.3° | 110.5° |
| O4' | C1' | C2' | 105.5° | 104.8° |
| O4' | C1' | N9 | 107.7° | 110.4° |
| O4' | C1' | H1' | 114.6° | 110.4° |
| C2' | C3' | N | 111.3° | 110.5° |
| C2' | C3' | H3' | 115.3° | 110.5° |
| C3' | C2' | C1' | 100.6° | 104.0° |
| C3' | C2' | H2'1 | 112.5° | 110.5° |
| C3' | C2' | H2'2 | 114.4° | 110.5° |
| N | C3' | H3' | 104.4° | 110.5° |
| C3' | N | HN1 | 109.5° | 106.7° |
| C3' | N | HN2 | 109.4° | 106.7° |
| C1' | C2' | H2'1 | 112.5° | 110.5° |
| C1' | C2' | H2'2 | 114.4° | 110.5° |
| C2' | C1' | N9 | 113.5° | 110.4° |
| C2' | C1' | H1' | 108.9° | 110.4° |
| H2'1 | C2' | H2'2 | 102.9° | 110.6° |
| N9 | C1' | H1' | 106.8° | 110.3° |
| C1' | N9 | C8 | 127.4° | 126.3° |
| C1' | N9 | C4 | 125.9° | 126.3° |
| C8 | N9 | C4 | 106.7° | 107.5° |
| N9 | C8 | N7 | 112.9° | 109.8° |
| N9 | C8 | H8 | 123.6° | 125.1° |
| N9 | C4 | C5 | 105.1° | 106.2° |
| N9 | C4 | N3 | 126.0° | 134.2° |
| N7 | C8 | H8 | 123.6° | 125.0° |
| C8 | N7 | C5 | 104.3° | 109.3° |
| N7 | C5 | C6 | 130.4° | 134.2° |
| N7 | C5 | C4 | 111.0° | 107.2° |
| C6 | C5 | C4 | 118.6° | 118.6° |
| C5 | C6 | O6 | 128.5° | 120.8° |
| C5 | C6 | N1 | 111.6° | 118.4° |
| C5 | C4 | N3 | 128.9° | 119.7° |
| O6 | C6 | N1 | 119.9° | 120.8° |
| C6 | N1 | C2 | 125.0° | 120.3° |
| C6 | N1 | HN3 | 117.5° | 119.9° |
| C2 | N1 | HN3 | 117.5° | 119.8° |
| N1 | C2 | N2 | 116.6° | 119.1° |
| N1 | C2 | N3 | 124.2° | 121.9° |
| N2 | C2 | N3 | 119.2° | 119.0° |
| C2 | N2 | H2N1 | 109.6° | 120.0° |
| C2 | N2 | H2N2 | 125.2° | 120.0° |
| C2 | N3 | C4 | 111.6° | 121.1° |
| H2N1 | N2 | H2N2 | 125.2° | 120.0° |
| HN1 | N | HN2 | 109.5° | 106.6° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1A | PA | O2A | O3P | 122.2° | 120.0° |
| O1A | PA | O2A | O5' | 124.1° | 120.0° |
| O1A | PA | O3P | O5' | 115.7° | 120.1° |
| O1A | PA | O2A | H2A | 32.2° | 180.0° |
| O1A | PA | O3P | H3P | 143.7° | 59.9° |
| O1A | PA | O5' | C5' | 42.7° | 59.9° |
| O2A | PA | O3P | O5' | 114.3° | 120.0° |
| O2A | PA | O3P | H3P | 86.3° | 60.0° |
| O2A | PA | O5' | C5' | 172.9° | 60.0° |
| O3P | PA | O2A | H2A | 154.4° | 60.0° |
| O3P | PA | O5' | C5' | 70.4° | 180.0° |
| O5' | PA | O2A | H2A | 92.0° | 60.0° |
| O5' | PA | O3P | H3P | 28.0° | 180.0° |
| PA | O5' | C5' | C4' | 179.7° | 180.0° |
| PA | O5' | C5' | H5'1 | 60.3° | 60.0° |
| PA | O5' | C5' | H5'2 | 60.1° | 59.9° |
| O5' | C5' | C4' | H5'1 | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'2 | 119.6° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 119.6° | 119.9° |
| O5' | C5' | C4' | O4' | 71.7° | 61.5° |
| O5' | C5' | C4' | C3' | 48.6° | 176.9° |
| O5' | C5' | C4' | H4' | 165.7° | 60.8° |
| C4' | C5' | H5'1 | H5'2 | 119.6° | 120.0° |
| C5' | C4' | O4' | C3' | 128.1° | 119.1° |
| C5' | C4' | O4' | H4' | 113.7° | 122.2° |
| C5' | C4' | C3' | H4' | 113.1° | 122.4° |
| C5' | C4' | O4' | C1' | 146.4° | 159.5° |
| C5' | C4' | C3' | C2' | 163.1° | 142.7° |
| C5' | C4' | C3' | N | 79.5° | 98.6° |
| C5' | C4' | C3' | H3' | 39.1° | 24.0° |
| H5'1 | C5' | C4' | O4' | 168.3° | 178.5° |
| H5'1 | C5' | C4' | C3' | 71.4° | 63.1° |
| H5'1 | C5' | C4' | H4' | 45.7° | 59.2° |
| H5'2 | C5' | C4' | O4' | 47.9° | 58.6° |
| H5'2 | C5' | C4' | C3' | 168.2° | 56.8° |
| H5'2 | C5' | C4' | H4' | 74.6° | 179.2° |
| O4' | C4' | C3' | H4' | 123.1° | 118.7° |
| O4' | C4' | C3' | C2' | 39.2° | 23.8° |
| O4' | C4' | C3' | N | 156.7° | 142.5° |
| O4' | C4' | C3' | H3' | 84.7° | 94.9° |
| C4' | O4' | C1' | C2' | 10.4° | 40.5° |
| C4' | O4' | C1' | N9 | 111.1° | 159.4° |
| C4' | O4' | C1' | H1' | 130.3° | 78.4° |
| C3' | C4' | O4' | C1' | 18.3° | 40.4° |
| C4' | C3' | C2' | N | 117.4° | 118.7° |
| C4' | C3' | C2' | H3' | 124.0° | 118.7° |
| C4' | C3' | N | H3' | 125.0° | 122.6° |
| C4' | C3' | C2' | C1' | 44.2° | 0.1° |
| C4' | C3' | C2' | H2'1 | 164.2° | 118.5° |
| C4' | C3' | C2' | H2'2 | 78.9° | 118.7° |
| C4' | C3' | N | HN1 | 51.5° | 178.1° |
| C4' | C3' | N | HN2 | 171.6° | 68.1° |
| H4' | C4' | O4' | C1' | 100.0° | 78.3° |
| H4' | C4' | C3' | C2' | 83.9° | 94.9° |
| H4' | C4' | C3' | N | 33.6° | 23.8° |
| H4' | C4' | C3' | H3' | 152.2° | 146.4° |
| O4' | C1' | C2' | C3' | 35.0° | 24.0° |
| O4' | C1' | C2' | N9 | 117.7° | 118.9° |
| O4' | C1' | C2' | H1' | 123.5° | 118.9° |
| O4' | C1' | C2' | H2'1 | 155.0° | 94.6° |
| O4' | C1' | C2' | H2'2 | 88.1° | 142.6° |
| O4' | C1' | N9 | H1' | 123.6° | 122.3° |
| O4' | C1' | N9 | C8 | 18.9° | 25.5° |
| O4' | C1' | N9 | C4 | 160.9° | 154.9° |
| C2' | C3' | N | H3' | 125.0° | 122.6° |
| C3' | C2' | C1' | H2'1 | 120.0° | 118.6° |
| C3' | C2' | C1' | H2'2 | 123.1° | 118.7° |
| C3' | C2' | H2'1 | H2'2 | 123.6° | 122.7° |
| C3' | C2' | C1' | N9 | 82.7° | 142.9° |
| C3' | C2' | C1' | H1' | 158.5° | 94.9° |
| C2' | C3' | N | HN1 | 58.5° | 63.3° |
| C2' | C3' | N | HN2 | 61.5° | 177.1° |
| N | C3' | C2' | C1' | 161.6° | 118.6° |
| N | C3' | C2' | H2'1 | 78.4° | 122.8° |
| N | C3' | C2' | H2'2 | 38.5° | 0.0° |
| C3' | N | HN1 | HN2 | 120.0° | 113.8° |
| H3' | C3' | C2' | C1' | 79.8° | 118.8° |
| H3' | C3' | C2' | H2'1 | 40.2° | 0.2° |
| H3' | C3' | C2' | H2'2 | 157.1° | 122.6° |
| H3' | C3' | N | HN1 | 176.5° | 59.3° |
| H3' | C3' | N | HN2 | 63.5° | 54.4° |
| C1' | C2' | H2'1 | H2'2 | 123.6° | 122.7° |
| C2' | C1' | N9 | H1' | 120.0° | 122.3° |
| C2' | C1' | N9 | C8 | 97.5° | 89.9° |
| C2' | C1' | N9 | C4 | 82.7° | 89.6° |
| H2'1 | C2' | C1' | N9 | 37.3° | 24.3° |
| H2'1 | C2' | C1' | H1' | 81.5° | 146.5° |
| H2'2 | C2' | C1' | N9 | 154.2° | 98.4° |
| H2'2 | C2' | C1' | H1' | 35.4° | 23.8° |
| C1' | N9 | C8 | C4 | 179.8° | 179.6° |
| C1' | N9 | C8 | N7 | 179.2° | 180.0° |
| C1' | N9 | C8 | H8 | 0.8° | 0.1° |
| C1' | N9 | C4 | C5 | 178.8° | 179.9° |
| C1' | N9 | C4 | N3 | 0.5° | 0.8° |
| H1' | C1' | N9 | C8 | 142.5° | 147.8° |
| H1' | C1' | N9 | C4 | 37.3° | 32.7° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| N9 | C8 | N7 | C5 | 0.1° | 0.1° |
| C8 | N9 | C4 | C5 | 1.0° | 0.5° |
| C8 | N9 | C4 | N3 | 179.6° | 179.5° |
| C4 | N9 | C8 | N7 | 0.6° | 0.3° |
| C4 | N9 | C8 | H8 | 179.4° | 179.7° |
| N9 | C4 | C5 | N7 | 1.1° | 0.4° |
| N9 | C4 | C5 | C6 | 177.9° | 179.8° |
| N9 | C4 | C5 | N3 | 179.3° | 179.2° |
| N9 | C4 | N3 | C2 | 179.9° | 179.5° |
| C8 | N7 | C5 | C6 | 178.1° | 180.0° |
| C8 | N7 | C5 | C4 | 0.8° | 0.2° |
| H8 | C8 | N7 | C5 | 179.9° | 180.0° |
| N7 | C5 | C6 | C4 | 178.8° | 179.8° |
| N7 | C5 | C6 | O6 | 2.9° | 0.1° |
| N7 | C5 | C6 | N1 | 178.7° | 180.0° |
| N7 | C5 | C4 | N3 | 179.5° | 179.7° |
| C5 | C6 | O6 | N1 | 178.3° | 179.9° |
| C5 | C6 | N1 | C2 | 1.8° | 0.1° |
| C5 | C6 | N1 | HN3 | 178.2° | 180.0° |
| C6 | C5 | C4 | N3 | 1.5° | 0.5° |
| C4 | C5 | C6 | O6 | 175.9° | 179.7° |
| C4 | C5 | C6 | N1 | 2.5° | 0.2° |
| C5 | C4 | N3 | C2 | 0.7° | 0.5° |
| O6 | C6 | N1 | C2 | 176.7° | 180.0° |
| O6 | C6 | N1 | HN3 | 3.3° | 0.1° |
| C6 | N1 | C2 | HN3 | 180.0° | 179.9° |
| C6 | N1 | C2 | N2 | 179.7° | 179.9° |
| C6 | N1 | C2 | N3 | 0.3° | 0.1° |
| N1 | C2 | N2 | N3 | 180.0° | 180.0° |
| N1 | C2 | N2 | H2N1 | 180.0° | 180.0° |
| N1 | C2 | N2 | H2N2 | 0.0° | 0.1° |
| N1 | C2 | N3 | C4 | 1.5° | 0.2° |
| HN3 | N1 | C2 | N2 | 0.3° | 0.0° |
| HN3 | N1 | C2 | N3 | 179.7° | 180.0° |
| C2 | N2 | H2N1 | H2N2 | 180.0° | 179.9° |
| N2 | C2 | N3 | C4 | 178.5° | 179.8° |
| N3 | C2 | N2 | H2N1 | 0.0° | 0.0° |
| N3 | C2 | N2 | H2N2 | 180.0° | 180.0° |
