G35
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | OP2 | sing | 1.61Å | 1.48Å | |
C2 | N3 | sing | 1.37Å | 1.33Å | |
C2 | N11 | sing | 1.38Å | 1.33Å | |
N3 | HN3 | sing | 0.97Å | 1.00Å | |
C4 | N3 | sing | 1.46Å | 1.47Å | |
C4 | H4 | sing | 1.09Å | 1.10Å | |
C5 | C4 | sing | 1.52Å | 1.53Å | |
C5 | O5 | doub | 1.21Å | 1.23Å | |
N7 | C5 | sing | 1.35Å | 1.33Å | |
N7 | HN7 | sing | 0.97Å | 1.00Å | |
C8 | N7 | sing | 1.34Å | 1.33Å | |
C8 | N9 | sing | 1.35Å | 1.33Å | |
O8 | C8 | doub | 1.22Å | 1.23Å | |
N9 | C4 | sing | 1.47Å | 1.47Å | |
C1' | N9 | sing | 1.47Å | 1.46Å | |
C1' | C2' | sing | 1.54Å | 1.52Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
N11 | HN11 | sing | 0.97Å | 1.00Å | |
N11 | HN1A | sing | 0.97Å | 1.00Å | |
N12 | C2 | doub | 1.30Å | 1.33Å | |
N12 | HN12 | sing | 0.97Å | 1.00Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C2' | H2'A | sing | 1.09Å | 1.10Å | |
C3' | C2' | sing | 1.55Å | 1.52Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | C3' | sing | 1.43Å | 1.41Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C4' | C3' | sing | 1.55Å | 1.53Å | |
C4' | C5' | sing | 1.53Å | 1.51Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O4' | C1' | sing | 1.44Å | 1.42Å | |
O4' | C4' | sing | 1.44Å | 1.45Å | |
C5' | O5' | sing | 1.43Å | 1.42Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'A | sing | 1.09Å | 1.10Å | |
O5' | P | sing | 1.61Å | 1.59Å | |
OP3 | P | sing | 1.61Å | 1.49Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
P | OP1 | doub | 1.48Å | 1.72Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP2 | P | O5' | 108.3° | 109.5° |
OP2 | P | OP3 | 119.8° | 109.4° |
P | OP2 | HOP2 | 109.5° | 114.0° |
OP2 | P | OP1 | 46.7° | 109.5° |
N3 | C2 | N11 | 119.5° | 120.0° |
C2 | N3 | HN3 | 118.3° | 120.0° |
C2 | N3 | C4 | 123.5° | 120.0° |
N3 | C2 | N12 | 121.1° | 120.0° |
C2 | N11 | HN11 | 120.0° | 120.0° |
C2 | N11 | HN1A | 120.0° | 120.0° |
N11 | C2 | N12 | 119.4° | 120.0° |
HN3 | N3 | C4 | 118.3° | 120.0° |
N3 | C4 | H4 | 105.3° | 110.6° |
N3 | C4 | C5 | 111.3° | 110.6° |
N3 | C4 | N9 | 109.6° | 110.7° |
H4 | C4 | C5 | 115.1° | 110.5° |
H4 | C4 | N9 | 116.7° | 110.6° |
C4 | C5 | O5 | 124.8° | 127.1° |
C4 | C5 | N7 | 109.9° | 105.7° |
C5 | C4 | N9 | 98.8° | 103.7° |
O5 | C5 | N7 | 125.3° | 127.2° |
C5 | N7 | HN7 | 125.5° | 124.2° |
C5 | N7 | C8 | 109.0° | 111.6° |
HN7 | N7 | C8 | 125.5° | 124.2° |
N7 | C8 | N9 | 112.4° | 112.5° |
N7 | C8 | O8 | 123.6° | 123.7° |
N9 | C8 | O8 | 123.9° | 123.8° |
C8 | N9 | C4 | 109.8° | 106.5° |
C8 | N9 | C1' | 125.0° | 126.7° |
C4 | N9 | C1' | 125.2° | 126.8° |
N9 | C1' | C2' | 114.5° | 109.8° |
N9 | C1' | H1' | 106.5° | 109.9° |
N9 | C1' | O4' | 107.3° | 109.9° |
C2' | C1' | H1' | 108.0° | 109.9° |
C1' | C2' | H2' | 111.9° | 110.4° |
C1' | C2' | H2'A | 111.9° | 110.5° |
C1' | C2' | C3' | 102.5° | 104.2° |
C2' | C1' | O4' | 105.7° | 107.3° |
H1' | C1' | O4' | 115.1° | 110.1° |
HN11 | N11 | HN1A | 120.0° | 120.0° |
C2 | N12 | HN12 | 112.0° | 120.0° |
H2' | C2' | H2'A | 107.0° | 110.4° |
H2' | C2' | C3' | 111.9° | 110.5° |
H2'A | C2' | C3' | 111.9° | 110.7° |
C2' | C3' | H3' | 112.3° | 110.9° |
C2' | C3' | O3' | 109.8° | 110.9° |
C2' | C3' | C4' | 103.5° | 102.1° |
H3' | C3' | O3' | 109.0° | 110.8° |
H3' | C3' | C4' | 114.8° | 110.9° |
C3' | O3' | HO3' | 109.5° | 114.1° |
O3' | C3' | C4' | 107.1° | 111.0° |
C3' | C4' | C5' | 114.0° | 110.7° |
C3' | C4' | H4' | 109.1° | 110.6° |
C3' | C4' | O4' | 106.2° | 103.5° |
C5' | C4' | H4' | 104.5° | 110.5° |
C5' | C4' | O4' | 110.7° | 110.6° |
C4' | C5' | O5' | 109.8° | 109.5° |
C4' | C5' | H5' | 109.3° | 109.5° |
C4' | C5' | H5'A | 109.4° | 109.4° |
H4' | C4' | O4' | 112.4° | 110.7° |
C1' | O4' | C4' | 110.3° | 107.0° |
O5' | C5' | H5' | 109.4° | 109.5° |
O5' | C5' | H5'A | 109.4° | 109.4° |
C5' | O5' | P | 120.0° | 123.0° |
H5' | C5' | H5'A | 109.6° | 109.5° |
O5' | P | OP3 | 106.4° | 109.4° |
O5' | P | OP1 | 64.6° | 109.5° |
P | OP3 | HOP3 | 109.5° | 114.0° |
OP3 | P | OP1 | 147.9° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP2 | P | O5' | C5' | 176.9° | 65.0° |
OP2 | P | O5' | OP3 | 129.9° | 120.0° |
OP2 | P | O5' | OP1 | 17.0° | 120.0° |
OP2 | P | OP3 | OP1 | 54.8° | 120.0° |
OP2 | P | OP3 | HOP3 | 180.0° | 60.1° |
N3 | C2 | N11 | N12 | 179.4° | 180.0° |
C2 | N3 | HN3 | C4 | 180.0° | 179.9° |
C2 | N3 | C4 | H4 | 154.1° | 15.8° |
C2 | N3 | C4 | C5 | 28.7° | 138.6° |
C2 | N3 | C4 | N9 | 79.6° | 107.1° |
N3 | C2 | N11 | HN11 | 179.4° | 0.1° |
N3 | C2 | N11 | HN1A | 0.6° | 179.9° |
N3 | C2 | N12 | HN12 | 179.4° | 180.0° |
N11 | C2 | N3 | HN3 | 1.1° | 0.1° |
N11 | C2 | N3 | C4 | 178.9° | 180.0° |
C2 | N11 | HN11 | HN1A | 180.0° | 180.0° |
N11 | C2 | N12 | HN12 | 0.0° | 0.0° |
HN3 | N3 | C4 | H4 | 25.9° | 164.3° |
HN3 | N3 | C4 | C5 | 151.4° | 41.5° |
HN3 | N3 | C4 | N9 | 100.4° | 72.8° |
HN3 | N3 | C2 | N12 | 179.5° | 180.0° |
N3 | C4 | H4 | C5 | 123.0° | 122.8° |
N3 | C4 | H4 | N9 | 121.8° | 122.9° |
N3 | C4 | C5 | N9 | 115.1° | 118.7° |
N3 | C4 | C5 | O5 | 68.1° | 61.4° |
N3 | C4 | C5 | N7 | 113.9° | 118.5° |
N3 | C4 | N9 | C8 | 115.1° | 118.4° |
N3 | C4 | N9 | C1' | 64.7° | 61.3° |
C4 | N3 | C2 | N12 | 0.5° | 0.1° |
H4 | C4 | C5 | N9 | 125.1° | 118.5° |
H4 | C4 | C5 | O5 | 51.7° | 61.4° |
H4 | C4 | C5 | N7 | 126.4° | 118.7° |
H4 | C4 | N9 | C8 | 125.4° | 118.7° |
H4 | C4 | N9 | C1' | 54.8° | 61.6° |
C4 | C5 | O5 | N7 | 177.8° | 179.9° |
C4 | C5 | N7 | HN7 | 179.3° | 180.0° |
C4 | C5 | N7 | C8 | 0.7° | 0.1° |
C5 | C4 | N9 | C8 | 1.4° | 0.2° |
C5 | C4 | N9 | C1' | 178.8° | 179.9° |
O5 | C5 | N7 | HN7 | 2.6° | 0.1° |
O5 | C5 | N7 | C8 | 177.4° | 180.0° |
O5 | C5 | C4 | N9 | 176.8° | 179.9° |
C5 | N7 | HN7 | C8 | 180.0° | 179.9° |
C5 | N7 | C8 | N9 | 0.3° | 0.0° |
C5 | N7 | C8 | O8 | 178.7° | 180.0° |
N7 | C5 | C4 | N9 | 1.2° | 0.1° |
HN7 | N7 | C8 | N9 | 179.7° | 179.9° |
HN7 | N7 | C8 | O8 | 1.3° | 0.1° |
N7 | C8 | N9 | O8 | 178.9° | 180.0° |
N7 | C8 | N9 | C4 | 1.1° | 0.1° |
N7 | C8 | N9 | C1' | 179.0° | 179.9° |
C8 | N9 | C4 | C1' | 179.8° | 179.7° |
C8 | N9 | C1' | C2' | 165.8° | 65.0° |
C8 | N9 | C1' | H1' | 46.5° | 174.0° |
C8 | N9 | C1' | O4' | 77.3° | 52.7° |
O8 | C8 | N9 | C4 | 177.8° | 179.9° |
O8 | C8 | N9 | C1' | 2.0° | 0.2° |
C4 | N9 | C1' | C2' | 14.0° | 115.3° |
C4 | N9 | C1' | H1' | 133.3° | 5.7° |
C4 | N9 | C1' | O4' | 102.9° | 127.0° |
N9 | C1' | C2' | H1' | 118.4° | 121.0° |
N9 | C1' | C2' | O4' | 117.9° | 119.4° |
N9 | C1' | H1' | O4' | 118.7° | 121.2° |
N9 | C1' | C2' | H2' | 89.3° | 119.9° |
N9 | C1' | C2' | H2'A | 30.7° | 2.6° |
N9 | C1' | C2' | C3' | 150.7° | 121.5° |
N9 | C1' | O4' | C4' | 143.1° | 145.9° |
C2' | C1' | H1' | O4' | 117.9° | 117.9° |
C1' | C2' | H2' | H2'A | 122.9° | 122.5° |
C1' | C2' | H2' | C3' | 114.3° | 114.7° |
C1' | C2' | H2'A | C3' | 114.3° | 114.9° |
C1' | C2' | C3' | H3' | 156.7° | 97.4° |
C1' | C2' | C3' | O3' | 81.8° | 139.1° |
C1' | C2' | C3' | C4' | 32.3° | 20.8° |
C2' | C1' | O4' | C4' | 20.5° | 26.6° |
H1' | C1' | C2' | H2' | 29.1° | 1.1° |
H1' | C1' | C2' | H2'A | 149.1° | 123.6° |
H1' | C1' | C2' | C3' | 90.9° | 117.5° |
H1' | C1' | O4' | C4' | 98.7° | 92.9° |
HN11 | N11 | C2 | N12 | 0.0° | 180.0° |
HN1A | N11 | C2 | N12 | 180.0° | 0.0° |
H2' | C2' | H2'A | C3' | 122.8° | 122.7° |
H2' | C2' | C3' | H3' | 83.3° | 144.0° |
H2' | C2' | C3' | O3' | 38.2° | 20.5° |
H2' | C2' | C3' | C4' | 152.3° | 97.8° |
H2' | C2' | C1' | O4' | 152.8° | 120.7° |
H2'A | C2' | C3' | H3' | 36.7° | 21.4° |
H2'A | C2' | C3' | O3' | 158.2° | 102.1° |
H2'A | C2' | C3' | C4' | 87.7° | 139.6° |
H2'A | C2' | C1' | O4' | 87.1° | 116.8° |
C2' | C3' | H3' | O3' | 121.9° | 123.6° |
C2' | C3' | H3' | C4' | 117.9° | 112.7° |
C2' | C3' | O3' | C4' | 111.8° | 112.8° |
C2' | C3' | O3' | HO3' | 180.0° | 61.4° |
C2' | C3' | C4' | C5' | 101.0° | 155.5° |
C2' | C3' | C4' | H4' | 142.6° | 81.6° |
C3' | C2' | C1' | O4' | 32.9° | 2.1° |
C2' | C3' | C4' | O4' | 21.1° | 37.0° |
H3' | C3' | O3' | C4' | 124.8° | 123.7° |
H3' | C3' | O3' | HO3' | 56.5° | 62.1° |
H3' | C3' | C4' | C5' | 21.8° | 37.4° |
H3' | C3' | C4' | H4' | 94.6° | 160.2° |
H3' | C3' | C4' | O4' | 143.9° | 81.1° |
O3' | C3' | C4' | C5' | 143.0° | 86.3° |
O3' | C3' | C4' | H4' | 26.6° | 36.6° |
O3' | C3' | C4' | O4' | 94.9° | 155.2° |
HO3' | O3' | C3' | C4' | 68.2° | 174.2° |
C3' | C4' | C5' | H4' | 119.0° | 122.9° |
C3' | C4' | C5' | O4' | 119.7° | 114.1° |
C3' | C4' | H4' | O4' | 117.6° | 114.1° |
C3' | C4' | O4' | C1' | 0.5° | 40.1° |
C3' | C4' | C5' | O5' | 44.6° | 175.0° |
C3' | C4' | C5' | H5' | 164.6° | 55.0° |
C3' | C4' | C5' | H5'A | 75.4° | 65.0° |
C5' | C4' | H4' | O4' | 120.1° | 122.9° |
C5' | C4' | O4' | C1' | 123.7° | 158.6° |
C4' | C5' | O5' | H5' | 120.0° | 120.0° |
C4' | C5' | O5' | H5'A | 120.0° | 120.0° |
C4' | C5' | H5' | H5'A | 119.9° | 119.9° |
C4' | C5' | O5' | P | 172.8° | 180.0° |
H4' | C4' | O4' | C1' | 119.8° | 78.5° |
H4' | C4' | C5' | O5' | 163.6° | 52.1° |
H4' | C4' | C5' | H5' | 76.4° | 67.9° |
H4' | C4' | C5' | H5'A | 43.6° | 172.1° |
O4' | C4' | C5' | O5' | 75.1° | 70.9° |
O4' | C4' | C5' | H5' | 44.9° | 169.1° |
O4' | C4' | C5' | H5'A | 164.9° | 49.1° |
O5' | C5' | H5' | H5'A | 119.9° | 120.0° |
C5' | O5' | P | OP3 | 47.0° | 175.1° |
C5' | O5' | P | OP1 | 166.1° | 55.1° |
H5' | C5' | O5' | P | 67.2° | 60.0° |
H5'A | C5' | O5' | P | 52.8° | 60.0° |
O5' | P | OP3 | OP1 | 68.2° | 120.0° |
O5' | P | OP3 | HOP3 | 57.0° | 180.0° |
O5' | P | OP2 | HOP2 | 21.2° | 60.0° |
OP3 | P | OP2 | HOP2 | 143.3° | 60.0° |
HOP3 | OP3 | P | OP1 | 125.2° | 60.0° |
HOP2 | OP2 | P | OP1 | 0.0° | 180.0° |