G2M
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N1 | C2 | sing | 1.36Å | 1.38Å | |
N1 | C6 | sing | 1.35Å | 1.39Å | |
N1 | HN1 | sing | 0.97Å | 1.00Å | |
C2 | N2 | sing | 1.37Å | 1.34Å | |
C2 | N3 | doub | 1.31Å | 1.31Å | |
N2 | HN2 | sing | 0.97Å | 1.00Å | |
N2 | HN2A | sing | 0.97Å | 1.00Å | |
N3 | C4 | sing | 1.34Å | 1.35Å | |
C4 | C5 | doub | 1.40Å | 1.38Å | Aromatic |
C4 | N9 | sing | 1.37Å | 1.37Å | Aromatic |
C5 | C6 | sing | 1.41Å | 1.41Å | |
C5 | N7 | sing | 1.36Å | 1.39Å | Aromatic |
C6 | O6 | doub | 1.22Å | 1.23Å | |
N7 | C8 | doub | 1.30Å | 1.30Å | Aromatic |
C8 | N9 | sing | 1.36Å | 1.38Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.08Å | |
N9 | C1' | sing | 1.47Å | 1.46Å | |
PA | O1A | doub | 1.48Å | 1.48Å | |
PA | O2A | sing | 1.61Å | 1.72Å | |
PA | O3A | sing | 1.61Å | 1.51Å | |
PA | O5' | sing | 1.61Å | 1.59Å | |
PB | O1B | sing | 1.61Å | 1.72Å | |
PB | O2B | doub | 1.48Å | 1.48Å | |
PB | O3A | sing | 1.61Å | 1.51Å | |
PB | C3B | sing | 1.82Å | 1.88Å | |
PG | O1G | sing | 1.61Å | 1.72Å | |
PG | O2G | sing | 1.61Å | 1.72Å | |
PG | C3B | sing | 1.82Å | 1.87Å | |
PG | O3G | doub | 1.48Å | 1.48Å | |
C1' | C2' | sing | 1.54Å | 1.53Å | |
C1' | O4' | sing | 1.44Å | 1.43Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C2' | C3' | sing | 1.55Å | 1.51Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C2' | H2'A | sing | 1.09Å | 1.10Å | |
C3' | O3' | sing | 1.43Å | 1.44Å | |
C3' | C4' | sing | 1.55Å | 1.52Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C3B | C3B2 | sing | 1.53Å | 1.52Å | |
C3B | C3B3 | sing | 1.53Å | 1.53Å | |
C3B2 | HC3B | sing | 1.09Å | 1.10Å | |
C3B2 | HC3A | sing | 1.09Å | 1.10Å | |
C3B2 | HC3C | sing | 1.09Å | 1.10Å | |
C3B3 | HC3D | sing | 1.09Å | 1.10Å | |
C3B3 | HC3E | sing | 1.09Å | 1.10Å | |
C3B3 | HC3F | sing | 1.09Å | 1.10Å | |
C4' | O4' | sing | 1.44Å | 1.44Å | |
C4' | C5' | sing | 1.53Å | 1.51Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C5' | O5' | sing | 1.43Å | 1.43Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'A | sing | 1.09Å | 1.10Å | |
O1B | H19 | sing | 0.97Å | 0.95Å | |
O1G | H20 | sing | 0.97Å | 0.95Å | |
O2A | H21 | sing | 0.97Å | 0.95Å | |
O2G | H22 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2 | N1 | C6 | 125.0° | 120.4° |
C2 | N1 | HN1 | 117.5° | 119.8° |
N1 | C2 | N2 | 117.2° | 119.1° |
N1 | C2 | N3 | 123.7° | 121.9° |
C6 | N1 | HN1 | 117.5° | 119.8° |
N1 | C6 | C5 | 111.6° | 118.3° |
N1 | C6 | O6 | 120.0° | 120.9° |
N2 | C2 | N3 | 119.2° | 119.1° |
C2 | N2 | HN2 | 120.0° | 120.0° |
C2 | N2 | HN2A | 120.0° | 120.0° |
C2 | N3 | C4 | 112.0° | 121.1° |
HN2 | N2 | HN2A | 120.0° | 120.0° |
N3 | C4 | C5 | 129.0° | 119.7° |
N3 | C4 | N9 | 125.5° | 134.2° |
C5 | C4 | N9 | 105.5° | 106.1° |
C4 | C5 | C6 | 118.7° | 118.6° |
C4 | C5 | N7 | 110.8° | 107.3° |
C4 | N9 | C8 | 106.5° | 107.5° |
C4 | N9 | C1' | 125.5° | 126.3° |
C6 | C5 | N7 | 130.5° | 134.1° |
C5 | C6 | O6 | 128.4° | 120.8° |
C5 | N7 | C8 | 104.3° | 109.4° |
N7 | C8 | N9 | 112.9° | 109.8° |
N7 | C8 | H8 | 123.6° | 125.1° |
N9 | C8 | H8 | 123.6° | 125.1° |
C8 | N9 | C1' | 128.0° | 126.2° |
N9 | C1' | C2' | 111.4° | 109.9° |
N9 | C1' | O4' | 108.6° | 109.9° |
N9 | C1' | H1' | 108.0° | 109.8° |
O1A | PA | O2A | 119.0° | 109.4° |
O1A | PA | O3A | 110.2° | 109.5° |
O1A | PA | O5' | 106.1° | 109.5° |
O2A | PA | O3A | 108.8° | 109.5° |
O2A | PA | O5' | 106.5° | 109.5° |
PA | O2A | H21 | 109.5° | 114.0° |
O3A | PA | O5' | 105.3° | 109.5° |
PA | O3A | PB | 130.0° | 134.0° |
PA | O5' | C5' | 120.3° | 123.0° |
O1B | PB | O2B | 119.6° | 109.5° |
O1B | PB | O3A | 104.8° | 109.4° |
O1B | PB | C3B | 105.2° | 109.5° |
PB | O1B | H19 | 109.5° | 114.0° |
O2B | PB | O3A | 110.0° | 109.5° |
O2B | PB | C3B | 107.2° | 109.5° |
O3A | PB | C3B | 109.7° | 109.4° |
PB | C3B | PG | 115.1° | 109.4° |
PB | C3B | C3B2 | 107.6° | 109.4° |
PB | C3B | C3B3 | 108.2° | 109.5° |
O1G | PG | O2G | 119.4° | 109.5° |
O1G | PG | C3B | 103.1° | 109.5° |
O1G | PG | O3G | 108.2° | 109.5° |
PG | O1G | H20 | 109.5° | 114.0° |
O2G | PG | C3B | 108.5° | 109.5° |
O2G | PG | O3G | 108.7° | 109.5° |
PG | O2G | H22 | 109.5° | 114.0° |
C3B | PG | O3G | 108.5° | 109.5° |
PG | C3B | C3B2 | 107.0° | 109.5° |
PG | C3B | C3B3 | 107.7° | 109.5° |
C2' | C1' | O4' | 107.0° | 107.3° |
C2' | C1' | H1' | 109.6° | 109.9° |
C1' | C2' | C3' | 102.0° | 104.2° |
C1' | C2' | H2' | 112.1° | 110.5° |
C1' | C2' | H2'A | 112.1° | 110.5° |
O4' | C1' | H1' | 112.3° | 110.0° |
C1' | O4' | C4' | 108.8° | 107.0° |
C3' | C2' | H2' | 112.0° | 110.5° |
C3' | C2' | H2'A | 112.0° | 110.5° |
C2' | C3' | O3' | 111.2° | 110.9° |
C2' | C3' | C4' | 100.9° | 102.1° |
C2' | C3' | H3' | 114.6° | 110.9° |
H2' | C2' | H2'A | 106.8° | 110.5° |
O3' | C3' | C4' | 111.5° | 110.9° |
O3' | C3' | H3' | 104.5° | 110.8° |
C3' | O3' | HO3' | 109.5° | 114.0° |
C4' | C3' | H3' | 114.3° | 110.9° |
C3' | C4' | O4' | 104.0° | 103.5° |
C3' | C4' | C5' | 116.2° | 110.6° |
C3' | C4' | H4' | 108.8° | 110.6° |
C3B2 | C3B | C3B3 | 111.3° | 109.5° |
C3B | C3B2 | HC3B | 109.5° | 109.5° |
C3B | C3B2 | HC3A | 109.5° | 109.4° |
C3B | C3B2 | HC3C | 109.5° | 109.5° |
C3B | C3B3 | HC3D | 109.5° | 109.4° |
C3B | C3B3 | HC3E | 109.5° | 109.5° |
C3B | C3B3 | HC3F | 109.5° | 109.5° |
HC3B | C3B2 | HC3A | 109.5° | 109.4° |
HC3B | C3B2 | HC3C | 109.5° | 109.6° |
HC3A | C3B2 | HC3C | 109.5° | 109.5° |
HC3D | C3B3 | HC3E | 109.5° | 109.4° |
HC3D | C3B3 | HC3F | 109.4° | 109.4° |
HC3E | C3B3 | HC3F | 109.4° | 109.5° |
O4' | C4' | C5' | 109.5° | 110.6° |
O4' | C4' | H4' | 115.6° | 110.6° |
C5' | C4' | H4' | 103.2° | 110.6° |
C4' | C5' | O5' | 110.5° | 109.5° |
C4' | C5' | H5' | 109.1° | 109.5° |
C4' | C5' | H5'A | 109.1° | 109.5° |
O5' | C5' | H5' | 109.1° | 109.4° |
O5' | C5' | H5'A | 109.1° | 109.5° |
H5' | C5' | H5'A | 109.9° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2 | N1 | C6 | HN1 | 180.0° | 179.8° |
N1 | C2 | N2 | N3 | 179.2° | 179.9° |
N1 | C2 | N2 | HN2 | 179.2° | 0.1° |
N1 | C2 | N2 | HN2A | 0.8° | 180.0° |
N1 | C2 | N3 | C4 | 1.9° | 0.1° |
C2 | N1 | C6 | C5 | 0.2° | 0.0° |
C2 | N1 | C6 | O6 | 179.1° | 179.9° |
C6 | N1 | C2 | N2 | 177.5° | 180.0° |
C6 | N1 | C2 | N3 | 1.7° | 0.0° |
N1 | C6 | C5 | C4 | 1.5° | 0.0° |
N1 | C6 | C5 | O6 | 179.2° | 179.9° |
N1 | C6 | C5 | N7 | 179.1° | 180.0° |
HN1 | N1 | C2 | N2 | 2.6° | 0.3° |
HN1 | N1 | C2 | N3 | 178.3° | 179.8° |
HN1 | N1 | C6 | C5 | 179.9° | 179.8° |
HN1 | N1 | C6 | O6 | 0.9° | 0.2° |
C2 | N2 | HN2 | HN2A | 180.0° | 179.9° |
N2 | C2 | N3 | C4 | 177.3° | 180.0° |
N3 | C2 | N2 | HN2 | 0.0° | 180.0° |
N3 | C2 | N2 | HN2A | 180.0° | 0.1° |
C2 | N3 | C4 | C5 | 0.4° | 0.0° |
C2 | N3 | C4 | N9 | 178.7° | 180.0° |
N3 | C4 | C5 | N9 | 178.6° | 180.0° |
N3 | C4 | C5 | C6 | 1.4° | 0.0° |
N3 | C4 | C5 | N7 | 179.1° | 180.0° |
N3 | C4 | N9 | C8 | 178.7° | 180.0° |
N3 | C4 | N9 | C1' | 4.1° | 0.0° |
C4 | C5 | C6 | N7 | 179.4° | 180.0° |
C4 | C5 | C6 | O6 | 177.7° | 180.0° |
C4 | C5 | N7 | C8 | 1.0° | 0.0° |
C5 | C4 | N9 | C8 | 2.6° | 0.0° |
C5 | C4 | N9 | C1' | 174.6° | 180.0° |
N9 | C4 | C5 | C6 | 177.2° | 180.0° |
N9 | C4 | C5 | N7 | 2.3° | 0.0° |
C4 | N9 | C8 | N7 | 2.3° | 0.1° |
C4 | N9 | C8 | C1' | 177.1° | 180.0° |
C4 | N9 | C8 | H8 | 177.7° | 180.0° |
C4 | N9 | C1' | C2' | 98.9° | 85.0° |
C4 | N9 | C1' | O4' | 143.5° | 157.2° |
C4 | N9 | C1' | H1' | 21.5° | 36.0° |
C6 | C5 | N7 | C8 | 178.5° | 179.9° |
N7 | C5 | C6 | O6 | 1.7° | 0.0° |
C5 | N7 | C8 | N9 | 0.8° | 0.1° |
C5 | N7 | C8 | H8 | 179.2° | 180.0° |
N7 | C8 | N9 | H8 | 180.0° | 179.9° |
N7 | C8 | N9 | C1' | 174.9° | 179.9° |
C8 | N9 | C1' | C2' | 77.7° | 95.0° |
C8 | N9 | C1' | O4' | 39.9° | 22.8° |
C8 | N9 | C1' | H1' | 161.9° | 144.0° |
H8 | C8 | N9 | C1' | 5.2° | 0.0° |
N9 | C1' | C2' | O4' | 118.6° | 119.5° |
N9 | C1' | C2' | H1' | 119.4° | 121.0° |
N9 | C1' | O4' | H1' | 119.3° | 121.0° |
N9 | C1' | C2' | C3' | 94.8° | 121.5° |
N9 | C1' | C2' | H2' | 145.2° | 119.9° |
N9 | C1' | C2' | H2'A | 25.2° | 2.8° |
N9 | C1' | O4' | C4' | 121.9° | 145.9° |
O1A | PA | O2A | O3A | 127.3° | 120.0° |
O1A | PA | O2A | O5' | 119.7° | 119.9° |
O1A | PA | O3A | O5' | 114.1° | 120.0° |
O1A | PA | O3A | PB | 7.3° | 40.0° |
O1A | PA | O5' | C5' | 55.7° | 54.9° |
O1A | PA | O2A | H21 | 0.0° | 180.0° |
O2A | PA | O3A | O5' | 113.8° | 120.0° |
O2A | PA | O3A | PB | 124.9° | 79.9° |
O2A | PA | O5' | C5' | 176.5° | 65.0° |
PA | O3A | PB | O1B | 162.6° | 60.0° |
PA | O3A | PB | O2B | 32.8° | 60.0° |
PA | O3A | PB | C3B | 84.9° | 180.0° |
O3A | PA | O5' | C5' | 61.1° | 174.9° |
O3A | PA | O2A | H21 | 127.2° | 60.0° |
O5' | PA | O3A | PB | 121.3° | 160.1° |
PA | O5' | C5' | C4' | 119.4° | 180.0° |
PA | O5' | C5' | H5' | 120.6° | 60.0° |
PA | O5' | C5' | H5'A | 0.6° | 60.0° |
O5' | PA | O2A | H21 | 119.7° | 60.0° |
O1B | PB | O2B | O3A | 121.3° | 120.0° |
O1B | PB | O2B | C3B | 119.4° | 120.1° |
O1B | PB | O3A | C3B | 112.5° | 120.0° |
O1B | PB | C3B | PG | 138.8° | 65.0° |
O1B | PB | C3B | C3B2 | 102.1° | 55.0° |
O1B | PB | C3B | C3B3 | 18.3° | 175.0° |
O2B | PB | O3A | C3B | 117.7° | 120.0° |
O2B | PB | C3B | PG | 10.5° | 55.0° |
O2B | PB | C3B | C3B2 | 129.7° | 175.0° |
O2B | PB | C3B | C3B3 | 110.0° | 65.0° |
O2B | PB | O1B | H19 | 0.0° | 180.0° |
O3A | PB | C3B | PG | 108.9° | 175.0° |
O3A | PB | C3B | C3B2 | 10.2° | 65.0° |
O3A | PB | C3B | C3B3 | 130.6° | 55.0° |
O3A | PB | O1B | H19 | 123.9° | 60.0° |
PB | C3B | PG | O1G | 38.7° | 175.0° |
PB | C3B | PG | O2G | 166.2° | 65.0° |
PB | C3B | PG | C3B2 | 119.5° | 120.0° |
PB | C3B | PG | C3B3 | 120.8° | 120.0° |
PB | C3B | PG | O3G | 75.8° | 55.0° |
PB | C3B | C3B2 | C3B3 | 118.3° | 120.0° |
PB | C3B | C3B2 | HC3B | 180.0° | 60.1° |
PB | C3B | C3B2 | HC3A | 60.0° | 180.0° |
PB | C3B | C3B2 | HC3C | 60.0° | 60.0° |
PB | C3B | C3B3 | HC3D | 180.0° | 60.0° |
PB | C3B | C3B3 | HC3E | 60.0° | 179.9° |
PB | C3B | C3B3 | HC3F | 60.0° | 60.0° |
C3B | PB | O1B | H19 | 120.4° | 60.0° |
O1G | PG | O2G | C3B | 117.5° | 120.0° |
O1G | PG | O2G | O3G | 124.7° | 120.0° |
O1G | PG | C3B | O3G | 114.6° | 120.0° |
O1G | PG | C3B | C3B2 | 80.8° | 55.1° |
O1G | PG | C3B | C3B3 | 159.5° | 65.0° |
O1G | PG | O2G | H22 | 124.7° | 60.0° |
O2G | PG | C3B | O3G | 118.0° | 120.0° |
O2G | PG | C3B | C3B2 | 46.7° | 175.0° |
O2G | PG | C3B | C3B3 | 73.1° | 55.0° |
O2G | PG | O1G | H20 | 124.9° | 60.0° |
PG | C3B | C3B2 | C3B3 | 117.4° | 120.0° |
PG | C3B | C3B2 | HC3B | 55.8° | 180.0° |
PG | C3B | C3B2 | HC3A | 175.8° | 60.0° |
PG | C3B | C3B2 | HC3C | 64.2° | 59.9° |
PG | C3B | C3B3 | HC3D | 55.0° | 60.0° |
PG | C3B | C3B3 | HC3E | 65.0° | 59.9° |
PG | C3B | C3B3 | HC3F | 175.0° | 180.0° |
C3B | PG | O1G | H20 | 114.8° | 180.0° |
C3B | PG | O2G | H22 | 117.8° | 60.0° |
O3G | PG | C3B | C3B2 | 164.7° | 65.0° |
O3G | PG | C3B | C3B3 | 44.9° | 175.0° |
O3G | PG | O1G | H20 | 0.0° | 60.0° |
O3G | PG | O2G | H22 | 0.0° | 180.0° |
C2' | C1' | O4' | H1' | 120.3° | 119.5° |
C1' | C2' | C3' | H2' | 120.0° | 118.6° |
C1' | C2' | C3' | H2'A | 120.0° | 118.7° |
C1' | C2' | H2' | H2'A | 123.1° | 122.6° |
C1' | C2' | C3' | O3' | 156.6° | 139.1° |
C1' | C2' | C3' | C4' | 38.2° | 20.9° |
C1' | C2' | C3' | H3' | 85.1° | 97.4° |
C2' | C1' | O4' | C4' | 1.5° | 26.5° |
O4' | C1' | C2' | C3' | 23.8° | 2.0° |
O4' | C1' | C2' | H2' | 96.2° | 120.7° |
O4' | C1' | C2' | H2'A | 143.8° | 116.7° |
C1' | O4' | C4' | C3' | 26.3° | 40.0° |
C1' | O4' | C4' | C5' | 151.1° | 158.5° |
C1' | O4' | C4' | H4' | 92.9° | 78.5° |
H1' | C1' | C2' | C3' | 145.8° | 117.6° |
H1' | C1' | C2' | H2' | 25.8° | 1.1° |
H1' | C1' | C2' | H2'A | 94.2° | 123.7° |
H1' | C1' | O4' | C4' | 118.8° | 93.0° |
C3' | C2' | H2' | H2'A | 123.0° | 122.6° |
C2' | C3' | O3' | C4' | 111.8° | 112.7° |
C2' | C3' | O3' | H3' | 124.2° | 123.6° |
C2' | C3' | C4' | H3' | 123.5° | 118.2° |
C2' | C3' | O3' | HO3' | 180.0° | 61.4° |
C2' | C3' | C4' | O4' | 40.2° | 37.0° |
C2' | C3' | C4' | C5' | 160.6° | 155.5° |
C2' | C3' | C4' | H4' | 83.5° | 81.5° |
H2' | C2' | C3' | O3' | 36.6° | 20.4° |
H2' | C2' | C3' | C4' | 81.8° | 97.8° |
H2' | C2' | C3' | H3' | 154.9° | 144.0° |
H2'A | C2' | C3' | O3' | 83.4° | 102.2° |
H2'A | C2' | C3' | C4' | 158.2° | 139.6° |
H2'A | C2' | C3' | H3' | 34.9° | 21.3° |
O3' | C3' | C4' | H3' | 118.3° | 123.6° |
O3' | C3' | C4' | O4' | 158.4° | 155.2° |
O3' | C3' | C4' | C5' | 81.3° | 86.3° |
O3' | C3' | C4' | H4' | 34.6° | 36.7° |
C4' | C3' | O3' | HO3' | 68.3° | 174.2° |
C3' | C4' | O4' | C5' | 124.8° | 118.5° |
C3' | C4' | O4' | H4' | 119.2° | 118.5° |
C3' | C4' | C5' | H4' | 119.0° | 122.9° |
C3' | C4' | C5' | O5' | 55.3° | 175.0° |
C3' | C4' | C5' | H5' | 175.3° | 55.0° |
C3' | C4' | C5' | H5'A | 64.7° | 65.0° |
H3' | C3' | O3' | HO3' | 55.8° | 62.2° |
H3' | C3' | C4' | O4' | 83.3° | 81.2° |
H3' | C3' | C4' | C5' | 37.1° | 37.3° |
H3' | C3' | C4' | H4' | 153.0° | 160.2° |
C3B | C3B2 | HC3B | HC3A | 120.0° | 119.9° |
C3B | C3B2 | HC3B | HC3C | 120.0° | 120.1° |
C3B | C3B2 | HC3A | HC3C | 120.0° | 119.9° |
C3B2 | C3B | C3B3 | HC3D | 62.0° | 180.0° |
C3B2 | C3B | C3B3 | HC3E | 178.0° | 60.1° |
C3B2 | C3B | C3B3 | HC3F | 58.0° | 60.0° |
C3B3 | C3B | C3B2 | HC3B | 61.6° | 59.9° |
C3B3 | C3B | C3B2 | HC3A | 58.4° | 60.0° |
C3B3 | C3B | C3B2 | HC3C | 178.3° | 180.0° |
C3B | C3B3 | HC3D | HC3E | 120.0° | 120.0° |
C3B | C3B3 | HC3D | HC3F | 120.0° | 120.0° |
C3B | C3B3 | HC3E | HC3F | 120.0° | 120.1° |
HC3B | C3B2 | HC3A | HC3C | 120.0° | 120.1° |
HC3D | C3B3 | HC3E | HC3F | 119.9° | 120.0° |
O4' | C4' | C5' | H4' | 123.6° | 123.0° |
O4' | C4' | C5' | O5' | 62.1° | 70.9° |
O4' | C4' | C5' | H5' | 57.9° | 169.1° |
O4' | C4' | C5' | H5'A | 177.9° | 49.1° |
C4' | C5' | O5' | H5' | 120.0° | 120.0° |
C4' | C5' | O5' | H5'A | 120.0° | 120.0° |
C4' | C5' | H5' | H5'A | 119.6° | 120.0° |
H4' | C4' | C5' | O5' | 174.3° | 52.0° |
H4' | C4' | C5' | H5' | 65.7° | 67.9° |
H4' | C4' | C5' | H5'A | 54.3° | 172.0° |
O5' | C5' | H5' | H5'A | 119.6° | 120.0° |