Obsolete: G25
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP3 | P | sing | 1.62Å | 8.63Å | |
OP3 | HOP3 | sing | 0.98Å | 0.95Å | |
P | OP1 | doub | 1.50Å | 1.48Å | |
P | OP2 | sing | 1.62Å | 1.48Å | |
P | O5' | sing | 1.62Å | 1.61Å | |
OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
O5' | C5' | sing | 1.42Å | 1.44Å | |
C5' | C4' | sing | 1.52Å | 1.52Å | |
C5' | H5' | sing | 1.09Å | 1.11Å | |
C5' | H5'' | sing | 1.09Å | 1.08Å | |
C4' | O4' | sing | 1.44Å | 1.45Å | |
C4' | C3' | sing | 1.52Å | 1.52Å | |
C4' | H4' | sing | 1.10Å | 1.09Å | |
O4' | C1' | sing | 1.44Å | 1.45Å | |
C3' | O3' | sing | 1.41Å | 1.43Å | |
C3' | C2' | sing | 1.52Å | 1.50Å | |
C3' | H3' | sing | 1.10Å | 1.09Å | |
O3' | HO'3 | sing | 0.97Å | 0.96Å | |
C2' | O2' | sing | 1.43Å | 1.44Å | |
C2' | C1' | sing | 1.53Å | 1.51Å | |
C2' | H2' | sing | 1.09Å | 1.09Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.46Å | 1.47Å | |
C1' | H1' | sing | 1.10Å | 1.09Å | |
N9 | C8 | sing | 1.37Å | 1.35Å | Aromatic |
N9 | C4 | sing | 1.36Å | 1.37Å | Aromatic |
C8 | N7 | doub | 1.32Å | 1.29Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.09Å | |
N7 | C5 | sing | 1.36Å | 1.40Å | Aromatic |
C5 | C6 | sing | 1.44Å | 1.42Å | |
C5 | C4 | doub | 1.37Å | 1.39Å | Aromatic |
C6 | O6 | doub | 1.23Å | 1.23Å | |
C6 | N1 | sing | 1.40Å | 1.38Å | |
N1 | C2 | sing | 1.41Å | 1.37Å | |
N1 | H1 | sing | 1.02Å | 1.01Å | |
C2 | N2 | sing | 1.37Å | 1.32Å | |
C2 | N3 | doub | 1.32Å | 1.33Å | |
N2 | H21 | sing | 0.99Å | 1.01Å | |
N2 | H22 | sing | 0.99Å | 1.01Å | |
N3 | C4 | sing | 1.35Å | 1.35Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
P | OP3 | HOP3 | 127.3° | 118.9° |
OP3 | P | OP1 | 127.3° | 115.3° |
OP3 | P | OP2 | 34.1° | 103.3° |
OP3 | P | O5' | 74.4° | 103.7° |
OP1 | P | OP2 | 119.8° | 115.0° |
OP1 | P | O5' | 108.3° | 115.0° |
OP2 | P | O5' | 108.0° | 102.9° |
P | OP2 | HOP2 | 34.1° | 119.0° |
P | O5' | C5' | 120.9° | 118.5° |
O5' | C5' | C4' | 112.0° | 108.7° |
O5' | C5' | H5' | 108.4° | 109.1° |
O5' | C5' | H5'' | 109.9° | 109.2° |
C4' | C5' | H5' | 110.5° | 110.1° |
C4' | C5' | H5'' | 106.1° | 110.1° |
C5' | C4' | O4' | 110.7° | 109.8° |
C5' | C4' | C3' | 110.5° | 113.5° |
C5' | C4' | H4' | 109.8° | 108.7° |
H5' | C5' | H5'' | 110.0° | 109.6° |
O4' | C4' | C3' | 107.0° | 105.2° |
O4' | C4' | H4' | 109.2° | 108.3° |
C4' | O4' | C1' | 109.1° | 108.3° |
C3' | C4' | H4' | 109.6° | 111.2° |
C4' | C3' | O3' | 111.5° | 112.2° |
C4' | C3' | C2' | 104.1° | 102.2° |
C4' | C3' | H3' | 109.7° | 110.2° |
O4' | C1' | C2' | 107.0° | 107.6° |
O4' | C1' | N9 | 109.6° | 109.4° |
O4' | C1' | H1' | 110.0° | 108.2° |
O3' | C3' | C2' | 111.4° | 113.5° |
O3' | C3' | H3' | 110.6° | 109.0° |
C3' | O3' | HO'3 | 107.1° | 106.4° |
C2' | C3' | H3' | 109.3° | 109.5° |
C3' | C2' | O2' | 110.9° | 111.2° |
C3' | C2' | C1' | 104.4° | 102.9° |
C3' | C2' | H2' | 110.2° | 112.6° |
O2' | C2' | C1' | 110.4° | 109.3° |
O2' | C2' | H2' | 110.9° | 106.9° |
C2' | O2' | HO2' | 111.0° | 107.3° |
C1' | C2' | H2' | 109.9° | 114.0° |
C2' | C1' | N9 | 110.9° | 113.7° |
C2' | C1' | H1' | 109.6° | 112.6° |
N9 | C1' | H1' | 109.6° | 105.2° |
C1' | N9 | C8 | 129.0° | 126.1° |
C1' | N9 | C4 | 127.1° | 127.3° |
C8 | N9 | C4 | 103.9° | 106.7° |
N9 | C8 | N7 | 117.9° | 112.4° |
N9 | C8 | H8 | 121.0° | 122.0° |
N9 | C4 | C5 | 106.1° | 104.9° |
N9 | C4 | N3 | 126.1° | 126.0° |
N7 | C8 | H8 | 121.2° | 125.5° |
C8 | N7 | C5 | 101.6° | 103.9° |
N7 | C5 | C6 | 130.0° | 128.7° |
N7 | C5 | C4 | 110.6° | 112.1° |
C6 | C5 | C4 | 119.5° | 119.2° |
C5 | C6 | O6 | 128.6° | 123.8° |
C5 | C6 | N1 | 111.4° | 110.8° |
C5 | C4 | N3 | 127.8° | 129.0° |
O6 | C6 | N1 | 120.0° | 125.4° |
C6 | N1 | C2 | 125.3° | 125.3° |
C6 | N1 | H1 | 115.8° | 117.4° |
C2 | N1 | H1 | 118.9° | 117.3° |
N1 | C2 | N2 | 116.4° | 115.4° |
N1 | C2 | N3 | 123.9° | 122.7° |
N2 | C2 | N3 | 119.7° | 122.0° |
C2 | N2 | H21 | 120.2° | 118.3° |
C2 | N2 | H22 | 119.7° | 118.2° |
C2 | N3 | C4 | 112.1° | 113.0° |
H21 | N2 | H22 | 120.2° | 123.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP3 | P | OP1 | OP2 | 40.3° | 120.0° |
OP3 | P | OP1 | O5' | 84.1° | 120.7° |
OP3 | P | OP2 | O5' | 11.0° | 107.7° |
OP3 | P | OP2 | HOP2 | 179.9° | 78.5° |
OP3 | P | O5' | C5' | 164.4° | 53.2° |
HOP3 | OP3 | P | OP1 | 180.0° | 48.7° |
HOP3 | OP3 | P | OP2 | 90.6° | 77.5° |
HOP3 | OP3 | P | O5' | 78.6° | 175.4° |
OP1 | P | OP2 | O5' | 124.5° | 125.8° |
OP1 | P | OP2 | HOP2 | 66.4° | 48.0° |
OP1 | P | O5' | C5' | 70.9° | 180.0° |
OP2 | P | O5' | C5' | 158.0° | 54.2° |
O5' | P | OP2 | HOP2 | 169.0° | 173.8° |
P | O5' | C5' | C4' | 145.2° | 180.0° |
P | O5' | C5' | H5' | 92.6° | 59.9° |
P | O5' | C5' | H5'' | 27.6° | 59.9° |
O5' | C5' | C4' | H5' | 120.9° | 119.5° |
O5' | C5' | C4' | H5'' | 119.9° | 119.6° |
O5' | C5' | H5' | H5'' | 120.1° | 119.5° |
O5' | C5' | C4' | O4' | 57.2° | 62.1° |
O5' | C5' | C4' | C3' | 61.1° | 179.5° |
O5' | C5' | C4' | H4' | 177.9° | 56.2° |
C4' | C5' | H5' | H5'' | 116.8° | 121.3° |
C5' | C4' | O4' | C3' | 120.5° | 122.5° |
C5' | C4' | O4' | H4' | 121.0° | 118.5° |
C5' | C4' | C3' | H4' | 121.1° | 122.9° |
C5' | C4' | O4' | C1' | 130.2° | 148.9° |
C5' | C4' | C3' | O3' | 94.8° | 80.9° |
C5' | C4' | C3' | C2' | 144.9° | 157.1° |
C5' | C4' | C3' | H3' | 28.1° | 40.7° |
H5' | C5' | C4' | O4' | 178.1° | 57.4° |
H5' | C5' | C4' | C3' | 59.8° | 60.1° |
H5' | C5' | C4' | H4' | 61.2° | 175.7° |
H5'' | C5' | C4' | O4' | 62.7° | 178.3° |
H5'' | C5' | C4' | C3' | 179.0° | 60.9° |
H5'' | C5' | C4' | H4' | 58.0° | 63.4° |
O4' | C4' | C3' | H4' | 118.3° | 117.0° |
O4' | C4' | C3' | O3' | 144.6° | 159.0° |
O4' | C4' | C3' | C2' | 24.4° | 37.0° |
O4' | C4' | C3' | H3' | 92.5° | 79.3° |
C4' | O4' | C1' | C2' | 8.7° | 5.0° |
C4' | O4' | C1' | N9 | 111.7° | 129.0° |
C4' | O4' | C1' | H1' | 127.7° | 116.9° |
C3' | C4' | O4' | C1' | 9.8° | 26.4° |
C4' | C3' | O3' | C2' | 115.9° | 115.2° |
C4' | C3' | O3' | H3' | 122.4° | 122.4° |
C4' | C3' | C2' | H3' | 117.1° | 116.9° |
C4' | C3' | O3' | HO'3 | 61.7° | 33.7° |
C4' | C3' | C2' | O2' | 90.0° | 84.1° |
C4' | C3' | C2' | C1' | 28.9° | 32.8° |
C4' | C3' | C2' | H2' | 146.8° | 156.0° |
H4' | C4' | O4' | C1' | 108.8° | 92.6° |
H4' | C4' | C3' | O3' | 26.3° | 42.0° |
H4' | C4' | C3' | C2' | 93.9° | 79.9° |
H4' | C4' | C3' | H3' | 149.2° | 163.7° |
O4' | C1' | C2' | C3' | 23.8° | 18.1° |
O4' | C1' | C2' | O2' | 95.5° | 100.1° |
O4' | C1' | C2' | N9 | 119.5° | 121.3° |
O4' | C1' | C2' | H1' | 119.3° | 119.2° |
O4' | C1' | C2' | H2' | 141.9° | 140.4° |
O4' | C1' | N9 | H1' | 120.9° | 116.0° |
O4' | C1' | N9 | C8 | 39.4° | 33.9° |
O4' | C1' | N9 | C4 | 137.2° | 146.2° |
O3' | C3' | C2' | H3' | 122.6° | 122.1° |
O3' | C3' | C2' | O2' | 30.3° | 36.9° |
O3' | C3' | C2' | C1' | 149.2° | 153.8° |
O3' | C3' | C2' | H2' | 92.9° | 83.1° |
C2' | C3' | O3' | HO'3 | 54.1° | 148.9° |
C3' | C2' | O2' | C1' | 115.2° | 112.9° |
C3' | C2' | O2' | H2' | 122.7° | 123.3° |
C3' | C2' | C1' | H2' | 118.1° | 122.2° |
C3' | C2' | O2' | HO2' | 180.0° | 167.5° |
C3' | C2' | C1' | N9 | 95.7° | 103.2° |
C3' | C2' | C1' | H1' | 143.1° | 137.3° |
H3' | C3' | O3' | HO'3 | 175.9° | 88.7° |
H3' | C3' | C2' | O2' | 152.8° | 159.0° |
H3' | C3' | C2' | C1' | 88.2° | 84.1° |
H3' | C3' | C2' | H2' | 29.7° | 39.0° |
O2' | C2' | C1' | H2' | 122.6° | 119.5° |
O2' | C2' | C1' | N9 | 145.0° | 138.5° |
O2' | C2' | C1' | H1' | 23.8° | 19.1° |
C1' | C2' | O2' | HO2' | 64.8° | 54.7° |
C2' | C1' | N9 | H1' | 121.2° | 123.6° |
C2' | C1' | N9 | C8 | 78.6° | 86.4° |
C2' | C1' | N9 | C4 | 104.8° | 93.5° |
H2' | C2' | O2' | HO2' | 57.2° | 69.2° |
H2' | C2' | C1' | N9 | 22.4° | 19.0° |
H2' | C2' | C1' | H1' | 98.8° | 100.5° |
C1' | N9 | C8 | C4 | 177.2° | 179.9° |
C1' | N9 | C8 | N7 | 176.9° | 180.0° |
C1' | N9 | C8 | H8 | 3.8° | 0.0° |
C1' | N9 | C4 | C5 | 176.9° | 179.9° |
C1' | N9 | C4 | N3 | 3.0° | 0.1° |
H1' | C1' | N9 | C8 | 160.3° | 150.0° |
H1' | C1' | N9 | C4 | 16.3° | 30.1° |
N9 | C8 | N7 | H8 | 179.4° | 180.0° |
N9 | C8 | N7 | C5 | 0.1° | 0.0° |
C8 | N9 | C4 | C5 | 0.4° | 0.0° |
C8 | N9 | C4 | N3 | 179.7° | 180.0° |
C4 | N9 | C8 | N7 | 0.3° | 0.0° |
C4 | N9 | C8 | H8 | 179.0° | 180.0° |
N9 | C4 | C5 | N7 | 0.3° | 0.0° |
N9 | C4 | C5 | C6 | 179.8° | 179.9° |
N9 | C4 | C5 | N3 | 179.9° | 180.0° |
N9 | C4 | N3 | C2 | 179.9° | 180.0° |
C8 | N7 | C5 | C6 | 180.0° | 179.9° |
C8 | N7 | C5 | C4 | 0.1° | 0.0° |
H8 | C8 | N7 | C5 | 179.2° | 180.0° |
N7 | C5 | C6 | C4 | 179.9° | 179.9° |
N7 | C5 | C6 | O6 | 0.6° | 0.0° |
N7 | C5 | C6 | N1 | 179.8° | 180.0° |
N7 | C5 | C4 | N3 | 179.8° | 180.0° |
C5 | C6 | O6 | N1 | 179.6° | 180.0° |
C5 | C6 | N1 | C2 | 0.0° | 0.0° |
C5 | C6 | N1 | H1 | 179.2° | 180.0° |
C6 | C5 | C4 | N3 | 0.1° | 0.1° |
C4 | C5 | C6 | O6 | 179.5° | 179.9° |
C4 | C5 | C6 | N1 | 0.1° | 0.1° |
C5 | C4 | N3 | C2 | 0.0° | 0.0° |
O6 | C6 | N1 | C2 | 179.6° | 179.9° |
O6 | C6 | N1 | H1 | 0.4° | 0.0° |
C6 | N1 | C2 | H1 | 179.2° | 180.0° |
C6 | N1 | C2 | N2 | 179.1° | 180.0° |
C6 | N1 | C2 | N3 | 0.1° | 0.0° |
N1 | C2 | N2 | N3 | 179.3° | 180.0° |
N1 | C2 | N2 | H21 | 0.7° | 146.8° |
N1 | C2 | N2 | H22 | 179.3° | 33.2° |
N1 | C2 | N3 | C4 | 0.1° | 0.0° |
H1 | N1 | C2 | N2 | 1.7° | 0.0° |
H1 | N1 | C2 | N3 | 179.0° | 180.0° |
C2 | N2 | H21 | H22 | 180.0° | 180.0° |
N2 | C2 | N3 | C4 | 179.1° | 180.0° |
N3 | C2 | N2 | H21 | 180.0° | 33.2° |
N3 | C2 | N2 | H22 | 0.0° | 146.8° |