English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

G14

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O14	C12	sing	1.35Å	1.28Å
O14	HO14	sing	0.97Å	0.95Å
O13	C12	doub	1.22Å	1.26Å
C12	C10	sing	1.47Å	1.49Å
C10	C9	doub	1.37Å	1.40Å	Aromatic
C10	N11	sing	1.35Å	1.36Å	Aromatic
C9	N8	sing	1.35Å	1.37Å	Aromatic
C9	H9	sing	1.08Å	1.08Å
N8	C7	sing	1.37Å	1.35Å	Aromatic
N11	C7	doub	1.31Å	1.37Å	Aromatic
C7	C6	sing	1.48Å	1.49Å	Aromatic
C6	C5	doub	1.40Å	1.39Å	Aromatic
C6	C1	sing	1.40Å	1.39Å	Aromatic
C1	C2	doub	1.38Å	1.40Å	Aromatic
C1	H1	sing	1.08Å	1.08Å
C2	C3	sing	1.38Å	1.40Å	Aromatic
C2	H2	sing	1.08Å	1.08Å
C4	C3	doub	1.38Å	1.41Å	Aromatic
C3	H3	sing	1.08Å	1.08Å
C5	C4	sing	1.38Å	1.40Å	Aromatic
C4	H4	sing	1.08Å	1.08Å
C5	H5	sing	1.08Å	1.08Å
N8	HN8	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C12	O14	HO14	109.5°	117.0°
O14	C12	O13	121.6°	120.0°
O14	C12	C10	122.1°	120.0°
O13	C12	C10	116.2°	120.0°
C12	C10	C9	125.9°	126.1°
C12	C10	N11	126.7°	126.1°
C9	C10	N11	107.4°	107.8°
C10	C9	N8	109.0°	107.0°
C10	C9	H9	125.5°	126.5°
C10	N11	C7	106.3°	108.9°
N8	C9	H9	125.5°	126.5°
C9	N8	C7	105.3°	107.6°
C9	N8	HN8	127.3°	126.2°
N8	C7	N11	112.0°	108.7°
N8	C7	C6	116.2°	125.7°
C7	N8	HN8	127.3°	126.3°
N11	C7	C6	131.8°	125.7°
C7	C6	C5	120.0°	120.1°
C7	C6	C1	119.8°	120.2°
C5	C6	C1	120.1°	119.7°
C6	C5	C4	119.8°	119.9°
C6	C5	H5	120.1°	120.1°
C6	C1	C2	121.7°	119.9°
C6	C1	H1	119.2°	120.1°
C2	C1	H1	119.2°	120.0°
C1	C2	C3	118.1°	120.1°
C1	C2	H2	121.0°	120.0°
C3	C2	H2	121.0°	119.9°
C2	C3	C4	120.7°	120.3°
C2	C3	H3	119.6°	119.8°
C4	C3	H3	119.6°	119.9°
C3	C4	C5	119.5°	120.1°
C3	C4	H4	120.2°	119.9°
C5	C4	H4	120.2°	120.0°
C4	C5	H5	120.1°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O14	C12	O13	C10	176.8°	179.9°
O14	C12	C10	C9	171.6°	180.0°
O14	C12	C10	N11	5.8°	0.2°
HO14	O14	C12	O13	0.0°	0.1°
HO14	O14	C12	C10	176.7°	180.0°
O13	C12	C10	C9	5.3°	0.1°
O13	C12	C10	N11	177.4°	179.7°
C12	C10	C9	N11	177.7°	179.8°
C12	C10	C9	N8	177.8°	180.0°
C12	C10	C9	H9	2.1°	0.0°
C12	C10	N11	C7	178.4°	179.9°
C10	C9	N8	H9	180.0°	180.0°
C10	C9	N8	C7	0.5°	0.0°
C9	C10	N11	C7	0.7°	0.3°
C10	C9	N8	HN8	179.5°	180.0°
N11	C10	C9	N8	0.1°	0.2°
N11	C10	C9	H9	179.9°	179.8°
C10	N11	C7	N8	1.0°	0.4°
C10	N11	C7	C6	179.6°	179.9°
C9	N8	C7	HN8	180.0°	180.0°
C9	N8	C7	N11	1.0°	0.2°
C9	N8	C7	C6	179.7°	180.0°
H9	C9	N8	C7	179.5°	180.0°
H9	C9	N8	HN8	0.5°	0.0°
N8	C7	N11	C6	178.5°	179.7°
N8	C7	C6	C5	69.0°	180.0°
N8	C7	C6	C1	113.8°	0.2°
N11	C7	C6	C5	109.4°	0.3°
N11	C7	C6	C1	67.7°	179.5°
N11	C7	N8	HN8	179.0°	179.8°
C7	C6	C5	C1	177.1°	179.8°
C7	C6	C1	C2	179.4°	180.0°
C7	C6	C1	H1	0.6°	0.0°
C7	C6	C5	C4	178.6°	179.7°
C7	C6	C5	H5	1.4°	0.1°
C6	C7	N8	HN8	0.3°	0.1°
C5	C6	C1	C2	2.2°	0.2°
C5	C6	C1	H1	177.8°	179.8°
C6	C5	C4	C3	0.6°	0.5°
C6	C5	C4	H5	180.0°	179.8°
C6	C5	C4	H4	179.4°	179.7°
C6	C1	C2	H1	180.0°	180.0°
C6	C1	C2	C3	2.0°	0.0°
C6	C1	C2	H2	178.0°	180.0°
C1	C6	C5	C4	1.5°	0.5°
C1	C6	C5	H5	178.5°	179.7°
C1	C2	C3	H2	180.0°	179.9°
C1	C2	C3	C4	1.1°	0.0°
C1	C2	C3	H3	178.9°	180.0°
H1	C1	C2	C3	178.0°	180.0°
H1	C1	C2	H2	2.0°	0.0°
C2	C3	C4	H3	180.0°	180.0°
C2	C3	C4	C5	0.4°	0.3°
C2	C3	C4	H4	179.6°	179.9°
H2	C2	C3	C4	178.9°	179.9°
H2	C2	C3	H3	1.1°	0.0°
C3	C4	C5	H4	180.0°	179.8°
C3	C4	C5	H5	179.4°	179.7°
H3	C3	C4	C5	179.6°	179.8°
H3	C3	C4	H4	0.4°	0.0°
H4	C4	C5	H5	0.6°	0.1°

220113

PDB entries from 2024-05-22

PDB statistics

PDBj update info

Contact PDBj

numon