G
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP3 | P | sing | 1.61Å | 1.48Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
P | OP1 | doub | 1.48Å | 1.50Å | |
P | OP2 | sing | 1.61Å | 1.50Å | |
P | O5' | sing | 1.61Å | 1.60Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.45Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C5' | H5' | sing | 1.09Å | 1.12Å | |
C5' | H5'' | sing | 1.09Å | 1.11Å | |
C4' | O4' | sing | 1.44Å | 1.44Å | |
C4' | C3' | sing | 1.54Å | 1.53Å | |
C4' | H4' | sing | 1.09Å | 1.12Å | |
O4' | C1' | sing | 1.44Å | 1.50Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | C2' | sing | 1.55Å | 1.50Å | |
C3' | H3' | sing | 1.09Å | 1.11Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | O2' | sing | 1.43Å | 1.40Å | |
C2' | C1' | sing | 1.54Å | 1.47Å | |
C2' | H2' | sing | 1.09Å | 1.11Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.46Å | 1.51Å | |
C1' | H1' | sing | 1.09Å | 1.11Å | |
N9 | C8 | sing | 1.36Å | 1.36Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.37Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.29Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.10Å | |
N7 | C5 | sing | 1.36Å | 1.40Å | Aromatic |
C5 | C6 | sing | 1.41Å | 1.41Å | |
C5 | C4 | doub | 1.40Å | 1.37Å | Aromatic |
C6 | O6 | doub | 1.22Å | 1.25Å | |
C6 | N1 | sing | 1.35Å | 1.40Å | |
N1 | C2 | sing | 1.36Å | 1.34Å | |
N1 | H1 | sing | 0.97Å | 1.02Å | |
C2 | N2 | sing | 1.37Å | 1.36Å | |
C2 | N3 | doub | 1.31Å | 1.34Å | |
N2 | H21 | sing | 0.97Å | 1.02Å | |
N2 | H22 | sing | 0.97Å | 1.02Å | |
N3 | C4 | sing | 1.34Å | 1.33Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
P | OP3 | HOP3 | 112.7° | 106.8° |
OP3 | P | OP1 | 112.7° | 109.5° |
OP3 | P | OP2 | 115.3° | 109.5° |
OP3 | P | O5' | 105.3° | 109.5° |
OP1 | P | OP2 | 111.8° | 109.4° |
OP1 | P | O5' | 106.6° | 109.5° |
OP2 | P | O5' | 104.3° | 109.5° |
P | OP2 | HOP2 | 111.7° | 106.8° |
P | O5' | C5' | 119.4° | 106.9° |
O5' | C5' | C4' | 107.5° | 109.6° |
O5' | C5' | H5' | 113.0° | 109.4° |
O5' | C5' | H5'' | 113.0° | 109.5° |
C4' | C5' | H5' | 112.9° | 109.5° |
C4' | C5' | H5'' | 112.9° | 109.5° |
C5' | C4' | O4' | 109.1° | 110.4° |
C5' | C4' | C3' | 114.4° | 110.6° |
C5' | C4' | H4' | 105.3° | 110.3° |
H5' | C5' | H5'' | 97.5° | 109.4° |
O4' | C4' | C3' | 106.0° | 104.8° |
O4' | C4' | H4' | 113.9° | 110.3° |
C4' | O4' | C1' | 105.7° | 105.3° |
C3' | C4' | H4' | 108.4° | 110.3° |
C4' | C3' | O3' | 110.2° | 110.6° |
C4' | C3' | C2' | 103.6° | 104.1° |
C4' | C3' | H3' | 114.4° | 110.5° |
O4' | C1' | C2' | 108.8° | 104.9° |
O4' | C1' | N9 | 101.8° | 110.4° |
O4' | C1' | H1' | 120.1° | 110.4° |
O3' | C3' | C2' | 113.8° | 110.5° |
O3' | C3' | H3' | 104.2° | 110.4° |
C3' | O3' | HO3' | 110.3° | 106.8° |
C2' | C3' | H3' | 110.9° | 110.6° |
C3' | C2' | O2' | 112.3° | 110.5° |
C3' | C2' | C1' | 101.3° | 103.9° |
C3' | C2' | H2' | 112.2° | 110.5° |
O2' | C2' | C1' | 106.9° | 110.8° |
O2' | C2' | H2' | 107.1° | 110.5° |
C2' | O2' | HO2' | 112.3° | 106.8° |
C1' | C2' | H2' | 117.2° | 110.4° |
C2' | C1' | N9 | 121.9° | 110.4° |
C2' | C1' | H1' | 99.1° | 110.4° |
N9 | C1' | H1' | 106.5° | 110.2° |
C1' | N9 | C8 | 130.2° | 126.2° |
C1' | N9 | C4 | 123.0° | 126.4° |
C8 | N9 | C4 | 106.9° | 107.5° |
N9 | C8 | N7 | 114.8° | 109.8° |
N9 | C8 | H8 | 125.0° | 125.1° |
N9 | C4 | C5 | 103.8° | 106.1° |
N9 | C4 | N3 | 128.2° | 134.2° |
N7 | C8 | H8 | 120.2° | 125.0° |
C8 | N7 | C5 | 102.5° | 109.3° |
N7 | C5 | C6 | 128.7° | 134.1° |
N7 | C5 | C4 | 112.1° | 107.3° |
C6 | C5 | C4 | 119.2° | 118.6° |
C5 | C6 | O6 | 128.7° | 120.8° |
C5 | C6 | N1 | 111.8° | 118.3° |
C5 | C4 | N3 | 128.0° | 119.7° |
O6 | C6 | N1 | 119.5° | 120.9° |
C6 | N1 | C2 | 124.7° | 120.3° |
C6 | N1 | H1 | 119.9° | 119.8° |
C2 | N1 | H1 | 115.4° | 119.9° |
N1 | C2 | N2 | 116.6° | 119.0° |
N1 | C2 | N3 | 124.1° | 121.9° |
N2 | C2 | N3 | 119.2° | 119.0° |
C2 | N2 | H21 | 116.6° | 120.0° |
C2 | N2 | H22 | 109.6° | 120.0° |
C2 | N3 | C4 | 112.2° | 121.1° |
H21 | N2 | H22 | 109.6° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP3 | P | OP1 | OP2 | 131.7° | 120.0° |
OP3 | P | OP1 | O5' | 115.0° | 120.0° |
OP3 | P | OP2 | O5' | 114.9° | 120.0° |
OP3 | P | OP2 | HOP2 | 49.7° | 60.0° |
OP3 | P | O5' | C5' | 38.7° | 180.0° |
HOP3 | OP3 | P | OP1 | 180.0° | 60.0° |
HOP3 | OP3 | P | OP2 | 50.1° | 60.0° |
HOP3 | OP3 | P | O5' | 64.2° | 180.0° |
OP1 | P | OP2 | O5' | 114.8° | 120.0° |
OP1 | P | OP2 | HOP2 | 180.0° | 180.0° |
OP1 | P | O5' | C5' | 158.6° | 60.0° |
OP2 | P | O5' | C5' | 83.0° | 60.0° |
O5' | P | OP2 | HOP2 | 65.2° | 60.0° |
P | O5' | C5' | C4' | 166.2° | 180.0° |
P | O5' | C5' | H5' | 68.6° | 60.0° |
P | O5' | C5' | H5'' | 40.9° | 59.9° |
O5' | C5' | C4' | H5' | 125.3° | 120.0° |
O5' | C5' | C4' | H5'' | 125.3° | 120.1° |
O5' | C5' | H5' | H5'' | 118.9° | 119.9° |
O5' | C5' | C4' | O4' | 65.6° | 61.4° |
O5' | C5' | C4' | C3' | 52.9° | 176.9° |
O5' | C5' | C4' | H4' | 171.9° | 60.7° |
C4' | C5' | H5' | H5'' | 118.8° | 119.9° |
C5' | C4' | O4' | C3' | 123.6° | 119.1° |
C5' | C4' | O4' | H4' | 117.3° | 122.2° |
C5' | C4' | C3' | H4' | 117.2° | 122.3° |
C5' | C4' | O4' | C1' | 137.8° | 159.5° |
C5' | C4' | C3' | O3' | 84.5° | 98.3° |
C5' | C4' | C3' | C2' | 153.4° | 143.0° |
C5' | C4' | C3' | H3' | 32.5° | 24.2° |
H5' | C5' | C4' | O4' | 169.2° | 178.5° |
H5' | C5' | C4' | C3' | 72.4° | 63.0° |
H5' | C5' | C4' | H4' | 46.6° | 59.3° |
H5'' | C5' | C4' | O4' | 59.8° | 58.6° |
H5'' | C5' | C4' | C3' | 178.2° | 56.9° |
H5'' | C5' | C4' | H4' | 62.8° | 179.2° |
O4' | C4' | C3' | H4' | 122.6° | 118.8° |
O4' | C4' | C3' | O3' | 155.3° | 142.8° |
O4' | C4' | C3' | C2' | 33.2° | 24.0° |
O4' | C4' | C3' | H3' | 87.7° | 94.7° |
C4' | O4' | C1' | C2' | 10.2° | 40.4° |
C4' | O4' | C1' | N9 | 119.6° | 159.4° |
C4' | O4' | C1' | H1' | 123.3° | 78.5° |
C3' | C4' | O4' | C1' | 14.2° | 40.5° |
C4' | C3' | O3' | C2' | 115.8° | 114.8° |
C4' | C3' | O3' | H3' | 123.2° | 122.6° |
C4' | C3' | C2' | H3' | 123.2° | 118.7° |
C4' | C3' | O3' | HO3' | 179.9° | 180.0° |
C4' | C3' | C2' | O2' | 75.8° | 118.8° |
C4' | C3' | C2' | C1' | 37.9° | 0.1° |
C4' | C3' | C2' | H2' | 163.7° | 118.6° |
H4' | C4' | O4' | C1' | 104.9° | 78.3° |
H4' | C4' | C3' | O3' | 32.7° | 24.0° |
H4' | C4' | C3' | C2' | 89.4° | 94.7° |
H4' | C4' | C3' | H3' | 149.7° | 146.5° |
O4' | C1' | C2' | C3' | 30.3° | 23.9° |
O4' | C1' | C2' | O2' | 87.3° | 142.6° |
O4' | C1' | C2' | N9 | 117.7° | 119.0° |
O4' | C1' | C2' | H1' | 126.3° | 118.9° |
O4' | C1' | C2' | H2' | 152.6° | 94.7° |
O4' | C1' | N9 | H1' | 126.6° | 122.2° |
O4' | C1' | N9 | C8 | 5.6° | 27.1° |
O4' | C1' | N9 | C4 | 173.7° | 153.0° |
O3' | C3' | C2' | H3' | 117.1° | 122.6° |
O3' | C3' | C2' | O2' | 43.9° | 0.0° |
O3' | C3' | C2' | C1' | 157.6° | 118.9° |
O3' | C3' | C2' | H2' | 76.6° | 122.6° |
C2' | C3' | O3' | HO3' | 64.1° | 65.3° |
C3' | C2' | O2' | C1' | 110.1° | 114.7° |
C3' | C2' | O2' | H2' | 123.5° | 122.6° |
C3' | C2' | C1' | H2' | 122.3° | 118.6° |
C3' | C2' | O2' | HO2' | 179.9° | 61.5° |
C3' | C2' | C1' | N9 | 87.4° | 142.8° |
C3' | C2' | C1' | H1' | 156.5° | 95.1° |
H3' | C3' | O3' | HO3' | 56.8° | 57.4° |
H3' | C3' | C2' | O2' | 161.1° | 122.5° |
H3' | C3' | C2' | C1' | 85.3° | 118.6° |
H3' | C3' | C2' | H2' | 40.5° | 0.1° |
O2' | C2' | C1' | H2' | 120.0° | 122.7° |
O2' | C2' | C1' | N9 | 154.9° | 98.5° |
O2' | C2' | C1' | H1' | 38.9° | 23.6° |
C1' | C2' | O2' | HO2' | 69.9° | 176.1° |
C2' | C1' | N9 | H1' | 112.3° | 122.2° |
C2' | C1' | N9 | C8 | 115.5° | 88.5° |
C2' | C1' | N9 | C4 | 65.2° | 91.4° |
H2' | C2' | O2' | HO2' | 56.5° | 61.2° |
H2' | C2' | C1' | N9 | 34.9° | 24.3° |
H2' | C2' | C1' | H1' | 81.1° | 146.4° |
C1' | N9 | C8 | C4 | 179.4° | 180.0° |
C1' | N9 | C8 | N7 | 179.9° | 180.0° |
C1' | N9 | C8 | H8 | 0.2° | 0.0° |
C1' | N9 | C4 | C5 | 179.7° | 180.0° |
C1' | N9 | C4 | N3 | 0.4° | 0.1° |
H1' | C1' | N9 | C8 | 132.2° | 149.3° |
H1' | C1' | N9 | C4 | 47.1° | 30.7° |
N9 | C8 | N7 | H8 | 180.0° | 180.0° |
N9 | C8 | N7 | C5 | 0.4° | 0.0° |
C8 | N9 | C4 | C5 | 0.3° | 0.0° |
C8 | N9 | C4 | N3 | 179.8° | 180.0° |
C4 | N9 | C8 | N7 | 0.5° | 0.0° |
C4 | N9 | C8 | H8 | 179.6° | 180.0° |
N9 | C4 | C5 | N7 | 0.1° | 0.0° |
N9 | C4 | C5 | C6 | 179.9° | 180.0° |
N9 | C4 | C5 | N3 | 179.9° | 180.0° |
N9 | C4 | N3 | C2 | 179.8° | 179.9° |
C8 | N7 | C5 | C6 | 179.6° | 180.0° |
C8 | N7 | C5 | C4 | 0.2° | 0.0° |
H8 | C8 | N7 | C5 | 179.6° | 180.0° |
N7 | C5 | C6 | C4 | 179.8° | 180.0° |
N7 | C5 | C6 | O6 | 0.3° | 0.0° |
N7 | C5 | C6 | N1 | 179.9° | 179.7° |
N7 | C5 | C4 | N3 | 180.0° | 180.0° |
C5 | C6 | O6 | N1 | 179.5° | 179.7° |
C5 | C6 | N1 | C2 | 0.3° | 0.6° |
C5 | C6 | N1 | H1 | 179.7° | 180.0° |
C6 | C5 | C4 | N3 | 0.2° | 0.0° |
C4 | C5 | C6 | O6 | 179.9° | 180.0° |
C4 | C5 | C6 | N1 | 0.3° | 0.3° |
C5 | C4 | N3 | C2 | 0.0° | 0.0° |
O6 | C6 | N1 | C2 | 179.9° | 179.7° |
O6 | C6 | N1 | H1 | 0.1° | 0.3° |
C6 | N1 | C2 | H1 | 180.0° | 179.4° |
C6 | N1 | C2 | N2 | 179.7° | 179.7° |
C6 | N1 | C2 | N3 | 0.1° | 0.7° |
N1 | C2 | N2 | N3 | 179.8° | 179.7° |
N1 | C2 | N2 | H21 | 180.0° | 179.6° |
N1 | C2 | N2 | H22 | 54.7° | 0.5° |
N1 | C2 | N3 | C4 | 0.1° | 0.3° |
H1 | N1 | C2 | N2 | 0.3° | 0.3° |
H1 | N1 | C2 | N3 | 179.9° | 180.0° |
C2 | N2 | H21 | H22 | 125.3° | 179.9° |
N2 | C2 | N3 | C4 | 179.9° | 180.0° |
N3 | C2 | N2 | H21 | 0.2° | 0.1° |
N3 | C2 | N2 | H22 | 125.4° | 179.8° |