English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

FP1

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	N2	sing	1.42Å	1.41Å
N2	C6	sing	1.41Å	1.17Å
C6	C5	doub	1.35Å	1.23Å
C5	C4	sing	1.48Å	1.38Å
C5	N1	sing	1.42Å	1.39Å
C4	C3	doub	1.36Å	1.36Å
C3	C2	sing	1.46Å	1.41Å
C2	C1	doub	1.34Å	1.41Å
C1	N1	sing	1.38Å	1.33Å
N1	C7	sing	1.47Å	1.48Å
O1	H1	sing	0.97Å	0.95Å
N2	H2	sing	0.97Å	1.00Å
C6	H6	sing	1.08Å	1.08Å
C4	H4	sing	1.08Å	1.08Å
C3	H3	sing	1.08Å	1.08Å
C2	HA	sing	1.08Å	1.08Å
C1	HB	sing	1.08Å	1.08Å
C7	H7C1	sing	1.09Å	1.10Å
C7	H7C2	sing	1.09Å	1.10Å
C7	H7C3	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	N2	C6	107.0°	120.0°
N2	O1	H1	109.5°	114.1°
O1	N2	H2	110.3°	120.0°
N2	C6	C5	171.2°	120.0°
C6	N2	H2	110.3°	120.0°
N2	C6	H6	94.4°	120.0°
C6	C5	C4	110.1°	121.8°
C6	C5	N1	121.5°	121.8°
C5	C6	H6	94.4°	120.0°
C4	C5	N1	128.4°	116.4°
C5	C4	C3	115.7°	117.2°
C5	C4	H4	122.1°	121.4°
C5	N1	C1	116.9°	117.4°
C5	N1	C7	128.6°	121.4°
C4	C3	C2	116.0°	119.4°
C3	C4	H4	122.2°	121.4°
C4	C3	H3	122.0°	120.3°
C3	C2	C1	126.7°	120.7°
C2	C3	H3	122.0°	120.4°
C3	C2	HA	116.6°	119.7°
C2	C1	N1	116.2°	119.6°
C1	C2	HA	116.6°	119.7°
C2	C1	HB	121.9°	120.2°
C1	N1	C7	114.3°	121.2°
N1	C1	HB	121.9°	120.2°
N1	C7	H7C1	109.5°	109.5°
N1	C7	H7C2	109.5°	109.4°
N1	C7	H7C3	109.5°	109.4°
H7C1	C7	H7C2	109.4°	109.5°
H7C1	C7	H7C3	109.5°	109.5°
H7C2	C7	H7C3	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	N2	C6	H2	120.0°	180.0°
O1	N2	C6	C5	12.2°	173.9°
O1	N2	C6	H6	167.8°	6.1°
N2	C6	C5	H6	180.0°	180.0°
N2	C6	C5	C4	167.1°	170.6°
N2	C6	C5	N1	11.9°	9.1°
C6	N2	O1	H1	15.7°	180.0°
C6	C5	C4	N1	178.9°	179.7°
C6	C5	C4	C3	179.6°	156.0°
C6	C5	N1	C1	179.0°	143.1°
C6	C5	N1	C7	2.9°	37.1°
C5	C6	N2	H2	107.8°	6.1°
C6	C5	C4	H4	0.4°	24.1°
C5	C4	C3	H4	180.0°	180.0°
C5	C4	C3	C2	1.0°	0.3°
C4	C5	N1	C1	2.2°	36.6°
C4	C5	N1	C7	178.3°	143.2°
C4	C5	C6	H6	12.9°	9.4°
C5	C4	C3	H3	179.0°	179.8°
N1	C5	C4	C3	0.7°	23.7°
C5	N1	C1	C2	1.8°	24.7°
C5	N1	C1	C7	176.7°	179.8°
N1	C5	C6	H6	168.2°	170.9°
N1	C5	C4	H4	179.3°	156.2°
C5	N1	C1	HB	178.3°	155.0°
C5	N1	C7	H7C1	170.1°	95.6°
C5	N1	C7	H7C2	69.9°	144.4°
C5	N1	C7	H7C3	50.1°	24.5°
C4	C3	C2	H3	180.0°	180.0°
C4	C3	C2	C1	1.3°	12.9°
C4	C3	C2	HA	178.7°	167.1°
C3	C2	C1	HA	180.0°	180.0°
C3	C2	C1	N1	0.2°	0.2°
C2	C3	C4	H4	179.0°	179.8°
C3	C2	C1	HB	179.8°	179.9°
C2	C1	N1	HB	180.0°	179.7°
C2	C1	N1	C7	178.4°	155.1°
C1	C2	C3	H3	178.7°	167.1°
N1	C1	C2	HA	179.9°	179.8°
C1	N1	C7	H7C1	13.7°	84.2°
C1	N1	C7	H7C2	106.3°	35.8°
C1	N1	C7	H7C3	133.7°	155.7°
C7	N1	C1	HB	1.6°	25.1°
N1	C7	H7C1	H7C2	120.0°	120.0°
N1	C7	H7C1	H7C3	120.0°	120.0°
N1	C7	H7C2	H7C3	120.0°	119.9°
H1	O1	N2	H2	104.3°	0.0°
H2	N2	C6	H6	72.2°	173.9°
H4	C4	C3	H3	1.0°	0.2°
H3	C3	C2	HA	1.3°	12.8°
HA	C2	C1	HB	0.1°	0.1°
H7C1	C7	H7C2	H7C3	120.0°	120.1°

246704

PDB entries from 2025-12-24

PDB statistics

PDBj update info

Contact PDBj

numon