FMP
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | O1P | doub | 1.48Å | 1.49Å | |
P | O2P | sing | 1.61Å | 1.49Å | |
P | O3P | sing | 1.61Å | 1.51Å | |
P | O5' | sing | 1.61Å | 1.55Å | |
O2P | HOP2 | sing | 0.97Å | 0.95Å | |
O3P | HOP3 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.44Å | |
C5' | C4' | sing | 1.53Å | 1.54Å | |
C5' | H5'1 | sing | 1.09Å | 1.12Å | |
C5' | H5'2 | sing | 1.09Å | 1.11Å | |
C4' | O4' | sing | 1.44Å | 1.42Å | |
C4' | C3' | sing | 1.54Å | 1.54Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.41Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | C2' | sing | 1.55Å | 1.51Å | |
C3' | H3' | sing | 1.09Å | 1.12Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | O2' | sing | 1.43Å | 1.44Å | |
C2' | C1' | sing | 1.54Å | 1.52Å | |
C2' | H2' | sing | 1.09Å | 1.12Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | C9 | sing | 1.51Å | 1.47Å | |
C1' | H1' | sing | 1.09Å | 1.11Å | |
C9 | N8 | doub | 1.30Å | 1.30Å | Aromatic |
C9 | C4 | sing | 1.41Å | 1.41Å | Aromatic |
N8 | N7 | sing | 1.40Å | 1.34Å | Aromatic |
N7 | C5 | sing | 1.37Å | 1.38Å | Aromatic |
N7 | HN7 | sing | 0.97Å | 1.02Å | |
C6 | N6 | sing | 1.38Å | 1.33Å | |
C6 | C5 | sing | 1.40Å | 1.40Å | Aromatic |
C6 | N1 | doub | 1.33Å | 1.35Å | Aromatic |
N6 | HN61 | sing | 0.97Å | 1.02Å | |
N6 | HN62 | sing | 0.97Å | 1.02Å | |
C5 | C4 | doub | 1.41Å | 1.36Å | Aromatic |
C4 | N3 | sing | 1.34Å | 1.37Å | Aromatic |
N3 | C2 | doub | 1.31Å | 1.33Å | Aromatic |
C2 | N1 | sing | 1.32Å | 1.33Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O1P | P | O2P | 114.3° | 109.4° |
O1P | P | O3P | 115.6° | 109.5° |
O1P | P | O5' | 102.0° | 109.5° |
O2P | P | O3P | 114.8° | 109.5° |
O2P | P | O5' | 106.8° | 109.5° |
P | O2P | HOP2 | 114.3° | 106.8° |
O3P | P | O5' | 101.0° | 109.5° |
P | O3P | HOP3 | 115.5° | 106.7° |
P | O5' | C5' | 129.5° | 106.8° |
O5' | C5' | C4' | 108.3° | 109.5° |
O5' | C5' | H5'1 | 112.6° | 109.5° |
O5' | C5' | H5'2 | 112.7° | 109.5° |
C4' | C5' | H5'1 | 112.6° | 109.4° |
C4' | C5' | H5'2 | 112.6° | 109.5° |
C5' | C4' | O4' | 107.8° | 110.4° |
C5' | C4' | C3' | 114.9° | 110.5° |
C5' | C4' | H4' | 106.2° | 110.3° |
H5'1 | C5' | H5'2 | 97.9° | 109.5° |
O4' | C4' | C3' | 106.9° | 104.8° |
O4' | C4' | H4' | 114.3° | 110.4° |
C4' | O4' | C1' | 102.1° | 105.2° |
C3' | C4' | H4' | 107.1° | 110.4° |
C4' | C3' | O3' | 109.8° | 110.5° |
C4' | C3' | C2' | 101.4° | 104.1° |
C4' | C3' | H3' | 114.3° | 110.5° |
O4' | C1' | C2' | 101.2° | 104.9° |
O4' | C1' | C9 | 105.5° | 110.3° |
O4' | C1' | H1' | 118.8° | 110.4° |
O3' | C3' | C2' | 109.3° | 110.5° |
O3' | C3' | H3' | 107.1° | 110.4° |
C3' | O3' | HO3' | 109.8° | 106.8° |
C2' | C3' | H3' | 114.8° | 110.6° |
C3' | C2' | O2' | 110.7° | 110.5° |
C3' | C2' | C1' | 101.9° | 104.0° |
C3' | C2' | H2' | 115.0° | 110.5° |
O2' | C2' | C1' | 113.5° | 110.8° |
O2' | C2' | H2' | 103.8° | 110.4° |
C2' | O2' | HO2' | 110.8° | 106.8° |
C1' | C2' | H2' | 112.3° | 110.4° |
C2' | C1' | C9 | 114.5° | 110.4° |
C2' | C1' | H1' | 110.5° | 110.3° |
C9 | C1' | H1' | 106.5° | 110.3° |
C1' | C9 | N8 | 125.6° | 125.6° |
C1' | C9 | C4 | 127.3° | 125.7° |
N8 | C9 | C4 | 107.0° | 108.7° |
C9 | N8 | N7 | 112.7° | 109.6° |
C9 | C4 | C5 | 105.6° | 106.9° |
C9 | C4 | N3 | 128.9° | 134.4° |
N8 | N7 | C5 | 104.8° | 108.0° |
N8 | N7 | HN7 | 126.3° | 126.0° |
C5 | N7 | HN7 | 128.9° | 126.0° |
N7 | C5 | C6 | 132.6° | 134.8° |
N7 | C5 | C4 | 109.4° | 106.8° |
N6 | C6 | C5 | 120.3° | 120.7° |
N6 | C6 | N1 | 121.4° | 120.7° |
C6 | N6 | HN61 | 120.3° | 120.0° |
C6 | N6 | HN62 | 108.3° | 120.0° |
C5 | C6 | N1 | 118.2° | 118.5° |
C6 | C5 | C4 | 117.9° | 118.4° |
C6 | N1 | C2 | 117.6° | 121.2° |
HN61 | N6 | HN62 | 108.3° | 120.0° |
C5 | C4 | N3 | 125.5° | 118.7° |
C4 | N3 | C2 | 110.7° | 120.6° |
N3 | C2 | N1 | 129.7° | 122.6° |
N3 | C2 | H2 | 115.2° | 118.7° |
N1 | C2 | H2 | 115.1° | 118.7° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O1P | P | O2P | O3P | 136.9° | 120.0° |
O1P | P | O2P | O5' | 112.0° | 120.0° |
O1P | P | O3P | O5' | 109.1° | 120.0° |
O1P | P | O2P | HOP2 | 180.0° | 60.0° |
O1P | P | O3P | HOP3 | 180.0° | 179.9° |
O1P | P | O5' | C5' | 62.2° | 60.0° |
O2P | P | O3P | O5' | 114.5° | 120.0° |
O2P | P | O3P | HOP3 | 43.6° | 60.0° |
O2P | P | O5' | C5' | 177.5° | 180.0° |
O3P | P | O2P | HOP2 | 43.1° | 60.0° |
O3P | P | O5' | C5' | 57.2° | 60.0° |
O5' | P | O2P | HOP2 | 68.0° | 180.0° |
O5' | P | O3P | HOP3 | 70.9° | 60.0° |
P | O5' | C5' | C4' | 160.5° | 180.0° |
P | O5' | C5' | H5'1 | 35.3° | 60.0° |
P | O5' | C5' | H5'2 | 74.3° | 60.0° |
O5' | C5' | C4' | H5'1 | 125.2° | 120.0° |
O5' | C5' | C4' | H5'2 | 125.2° | 120.0° |
O5' | C5' | H5'1 | H5'2 | 118.6° | 120.0° |
O5' | C5' | C4' | O4' | 58.9° | 61.5° |
O5' | C5' | C4' | C3' | 60.1° | 176.9° |
O5' | C5' | C4' | H4' | 178.2° | 60.8° |
C4' | C5' | H5'1 | H5'2 | 118.6° | 120.0° |
C5' | C4' | O4' | C3' | 124.0° | 119.0° |
C5' | C4' | O4' | H4' | 117.7° | 122.2° |
C5' | C4' | C3' | H4' | 117.6° | 122.3° |
C5' | C4' | O4' | C1' | 161.6° | 159.4° |
C5' | C4' | C3' | O3' | 116.5° | 98.3° |
C5' | C4' | C3' | C2' | 128.0° | 142.9° |
C5' | C4' | C3' | H3' | 3.9° | 24.2° |
H5'1 | C5' | C4' | O4' | 175.9° | 178.5° |
H5'1 | C5' | C4' | C3' | 65.1° | 63.1° |
H5'1 | C5' | C4' | H4' | 53.0° | 59.2° |
H5'2 | C5' | C4' | O4' | 66.3° | 58.5° |
H5'2 | C5' | C4' | C3' | 174.6° | 56.9° |
H5'2 | C5' | C4' | H4' | 56.5° | 179.2° |
O4' | C4' | C3' | H4' | 122.9° | 118.8° |
O4' | C4' | C3' | O3' | 124.0° | 142.8° |
O4' | C4' | C3' | C2' | 8.5° | 24.1° |
O4' | C4' | C3' | H3' | 115.6° | 94.7° |
C4' | O4' | C1' | C2' | 51.3° | 40.4° |
C4' | O4' | C1' | C9 | 170.9° | 159.4° |
C4' | O4' | C1' | H1' | 69.8° | 78.4° |
C3' | C4' | O4' | C1' | 37.6° | 40.5° |
C4' | C3' | O3' | C2' | 110.4° | 114.7° |
C4' | C3' | O3' | H3' | 124.6° | 122.6° |
C4' | C3' | C2' | H3' | 123.7° | 118.7° |
C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
C4' | C3' | C2' | O2' | 142.6° | 118.8° |
C4' | C3' | C2' | C1' | 21.5° | 0.1° |
C4' | C3' | C2' | H2' | 100.2° | 118.7° |
H4' | C4' | O4' | C1' | 80.6° | 78.3° |
H4' | C4' | C3' | O3' | 1.1° | 23.9° |
H4' | C4' | C3' | C2' | 114.4° | 94.8° |
H4' | C4' | C3' | H3' | 121.5° | 146.5° |
O4' | C1' | C2' | C3' | 45.4° | 23.8° |
O4' | C1' | C2' | O2' | 164.5° | 142.6° |
O4' | C1' | C2' | C9 | 113.0° | 118.9° |
O4' | C1' | C2' | H1' | 126.8° | 118.9° |
O4' | C1' | C2' | H2' | 78.2° | 94.7° |
O4' | C1' | C9 | H1' | 127.2° | 122.2° |
O4' | C1' | C9 | N8 | 16.7° | 57.1° |
O4' | C1' | C9 | C4 | 158.3° | 122.6° |
O3' | C3' | C2' | H3' | 120.3° | 122.6° |
O3' | C3' | C2' | O2' | 26.7° | 0.1° |
O3' | C3' | C2' | C1' | 94.4° | 118.9° |
O3' | C3' | C2' | H2' | 143.9° | 122.6° |
C2' | C3' | O3' | HO3' | 69.6° | 65.3° |
C3' | C2' | O2' | C1' | 113.9° | 114.8° |
C3' | C2' | O2' | H2' | 123.9° | 122.6° |
C3' | C2' | C1' | H2' | 123.6° | 118.6° |
C3' | C2' | O2' | HO2' | 180.0° | 61.4° |
C3' | C2' | C1' | C9 | 158.4° | 142.8° |
C3' | C2' | C1' | H1' | 81.4° | 95.0° |
H3' | C3' | O3' | HO3' | 55.3° | 57.4° |
H3' | C3' | C2' | O2' | 93.7° | 122.5° |
H3' | C3' | C2' | C1' | 145.3° | 118.5° |
H3' | C3' | C2' | H2' | 23.5° | 0.0° |
O2' | C2' | C1' | H2' | 117.3° | 122.7° |
O2' | C2' | C1' | C9 | 82.5° | 98.5° |
O2' | C2' | C1' | H1' | 37.7° | 23.7° |
C1' | C2' | O2' | HO2' | 66.1° | 176.1° |
C2' | C1' | C9 | H1' | 122.4° | 122.2° |
C2' | C1' | C9 | N8 | 93.7° | 58.5° |
C2' | C1' | C9 | C4 | 91.3° | 121.8° |
H2' | C2' | O2' | HO2' | 56.1° | 61.2° |
H2' | C2' | C1' | C9 | 34.8° | 24.2° |
H2' | C2' | C1' | H1' | 155.1° | 146.4° |
C1' | C9 | N8 | C4 | 175.9° | 179.8° |
C1' | C9 | N8 | N7 | 177.1° | 180.0° |
C1' | C9 | C4 | C5 | 177.9° | 180.0° |
C1' | C9 | C4 | N3 | 1.5° | 0.1° |
H1' | C1' | C9 | N8 | 143.9° | 179.3° |
H1' | C1' | C9 | C4 | 31.1° | 0.4° |
C9 | N8 | N7 | C5 | 4.7° | 0.2° |
C9 | N8 | N7 | HN7 | 175.2° | 179.8° |
N8 | C9 | C4 | C5 | 6.3° | 0.3° |
N8 | C9 | C4 | N3 | 174.3° | 179.9° |
C4 | C9 | N8 | N7 | 7.0° | 0.3° |
C9 | C4 | C5 | N7 | 3.5° | 0.1° |
C9 | C4 | C5 | C6 | 174.7° | 179.6° |
C9 | C4 | C5 | N3 | 179.4° | 179.9° |
C9 | C4 | N3 | C2 | 178.9° | 180.0° |
N8 | N7 | C5 | HN7 | 179.9° | 180.0° |
N8 | N7 | C5 | C6 | 178.2° | 179.3° |
N8 | N7 | C5 | C4 | 0.4° | 0.0° |
N7 | C5 | C6 | N6 | 7.7° | 0.5° |
N7 | C5 | C6 | C4 | 177.7° | 179.3° |
N7 | C5 | C6 | N1 | 175.6° | 179.9° |
N7 | C5 | C4 | N3 | 177.0° | 180.0° |
HN7 | N7 | C5 | C6 | 1.7° | 0.7° |
HN7 | N7 | C5 | C4 | 179.5° | 180.0° |
N6 | C6 | C5 | N1 | 176.7° | 179.6° |
C6 | N6 | HN61 | HN62 | 125.2° | 179.7° |
N6 | C6 | C5 | C4 | 169.9° | 179.8° |
N6 | C6 | N1 | C2 | 172.1° | 179.9° |
C5 | C6 | N6 | HN61 | 179.9° | 179.7° |
C5 | C6 | N6 | HN62 | 54.7° | 0.6° |
C6 | C5 | C4 | N3 | 4.8° | 0.5° |
C5 | C6 | N1 | C2 | 4.5° | 0.3° |
N1 | C6 | N6 | HN61 | 3.4° | 0.1° |
N1 | C6 | N6 | HN62 | 121.8° | 179.8° |
N1 | C6 | C5 | C4 | 6.7° | 0.6° |
C6 | N1 | C2 | N3 | 0.1° | 0.0° |
C6 | N1 | C2 | H2 | 180.0° | 179.9° |
C5 | C4 | N3 | C2 | 0.4° | 0.2° |
C4 | N3 | C2 | N1 | 2.2° | 0.1° |
C4 | N3 | C2 | H2 | 177.8° | 180.0° |
N3 | C2 | N1 | H2 | 179.9° | 179.9° |