Obsolete: FMO
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O6 | C6 | sing | 1.43Å | 1.40Å | |
O4 | C4 | sing | 1.43Å | 1.44Å | |
C4 | C5 | sing | 1.53Å | 1.50Å | |
C4 | C3 | sing | 1.53Å | 1.50Å | |
C6 | C5 | sing | 1.53Å | 1.49Å | |
O3 | C3 | sing | 1.43Å | 1.46Å | |
C5 | O5 | sing | 1.43Å | 1.47Å | |
C3 | C2 | sing | 1.53Å | 1.46Å | |
O5 | C1 | sing | 1.43Å | 1.50Å | |
C2 | C1 | sing | 1.53Å | 1.51Å | |
C2 | O2 | sing | 1.43Å | 1.47Å | |
C1 | O1 | sing | 1.43Å | 1.41Å | |
O1 | C4' | sing | 1.43Å | 1.45Å | |
O3' | C3' | sing | 1.43Å | 1.48Å | |
C4' | C3' | sing | 1.53Å | 1.48Å | |
C4' | C5' | sing | 1.53Å | 1.54Å | |
O6' | C6' | sing | 1.43Å | 1.47Å | |
C6' | C5' | sing | 1.53Å | 1.54Å | |
C3' | C2' | sing | 1.53Å | 1.49Å | |
C5' | O5' | sing | 1.43Å | 1.45Å | |
F2 | C2' | sing | 1.40Å | 1.35Å | |
C2' | F3 | sing | 1.40Å | 1.36Å | |
C2' | C1' | sing | 1.53Å | 1.53Å | |
O5' | C1' | sing | 1.43Å | 1.49Å | |
C1' | F1 | sing | 1.40Å | 1.32Å | |
C1 | H1 | sing | 1.09Å | 1.10Å | |
C2 | H2 | sing | 1.09Å | 1.10Å | |
C3 | H3 | sing | 1.09Å | 1.10Å | |
C4 | H4 | sing | 1.09Å | 1.10Å | |
C5 | H5 | sing | 1.09Å | 1.10Å | |
C6 | H6 | sing | 1.09Å | 1.10Å | |
C6 | H7 | sing | 1.09Å | 1.10Å | |
C1' | H8 | sing | 1.09Å | 1.10Å | |
O2 | H9 | sing | 0.97Å | 0.95Å | |
O3 | H10 | sing | 0.97Å | 0.95Å | |
O4 | H11 | sing | 0.97Å | 0.95Å | |
O6 | H12 | sing | 0.97Å | 0.95Å | |
C3' | H13 | sing | 1.09Å | 1.10Å | |
C4' | H14 | sing | 1.09Å | 1.10Å | |
C5' | H15 | sing | 1.09Å | 1.10Å | |
C6' | H16 | sing | 1.09Å | 1.10Å | |
C6' | H17 | sing | 1.09Å | 1.10Å | |
O3' | H18 | sing | 0.97Å | 0.95Å | |
O6' | H19 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O6 | C6 | C5 | 108.3° | 109.5° |
O6 | C6 | H6 | 109.8° | 109.4° |
O6 | C6 | H7 | 109.8° | 109.5° |
C6 | O6 | H12 | 109.5° | 114.0° |
O4 | C4 | C5 | 112.3° | 109.5° |
O4 | C4 | C3 | 109.2° | 109.5° |
O4 | C4 | H4 | 109.9° | 109.6° |
C4 | O4 | H11 | 109.5° | 114.0° |
C5 | C4 | C3 | 107.1° | 109.2° |
C4 | C5 | C6 | 112.0° | 109.5° |
C4 | C5 | O5 | 110.4° | 109.4° |
C5 | C4 | H4 | 109.1° | 109.5° |
C4 | C5 | H5 | 108.1° | 109.5° |
C4 | C3 | O3 | 108.9° | 109.6° |
C4 | C3 | C2 | 111.9° | 109.1° |
C4 | C3 | H3 | 108.2° | 109.5° |
C3 | C4 | H4 | 109.1° | 109.5° |
C6 | C5 | O5 | 109.4° | 109.5° |
C6 | C5 | H5 | 108.3° | 109.6° |
C5 | C6 | H6 | 109.8° | 109.4° |
C5 | C6 | H7 | 109.7° | 109.5° |
O3 | C3 | C2 | 110.3° | 109.6° |
O3 | C3 | H3 | 108.7° | 109.5° |
C3 | O3 | H10 | 109.5° | 114.0° |
C5 | O5 | C1 | 111.1° | 114.1° |
O5 | C5 | H5 | 108.6° | 109.5° |
C3 | C2 | C1 | 112.7° | 109.2° |
C3 | C2 | O2 | 109.0° | 109.5° |
C3 | C2 | H2 | 108.4° | 109.6° |
C2 | C3 | H3 | 108.7° | 109.6° |
O5 | C1 | C2 | 111.6° | 109.4° |
O5 | C1 | O1 | 111.0° | 109.5° |
O5 | C1 | H1 | 108.4° | 109.5° |
C1 | C2 | O2 | 110.4° | 109.5° |
C2 | C1 | O1 | 108.1° | 109.4° |
C2 | C1 | H1 | 108.2° | 109.5° |
C1 | C2 | H2 | 107.8° | 109.5° |
O2 | C2 | H2 | 108.4° | 109.5° |
C2 | O2 | H9 | 109.5° | 114.0° |
C1 | O1 | C4' | 115.0° | 114.0° |
O1 | C1 | H1 | 109.5° | 109.5° |
O1 | C4' | C3' | 111.2° | 109.5° |
O1 | C4' | C5' | 104.8° | 109.5° |
O1 | C4' | H14 | 110.5° | 109.6° |
O3' | C3' | C4' | 108.8° | 109.6° |
O3' | C3' | C2' | 109.3° | 109.5° |
O3' | C3' | H13 | 108.3° | 109.6° |
C3' | O3' | H18 | 109.5° | 114.0° |
C3' | C4' | C5' | 110.9° | 109.1° |
C4' | C3' | C2' | 113.7° | 109.0° |
C4' | C3' | H13 | 108.3° | 109.6° |
C3' | C4' | H14 | 110.0° | 109.5° |
C4' | C5' | C6' | 109.1° | 109.5° |
C4' | C5' | O5' | 113.4° | 109.5° |
C5' | C4' | H14 | 109.2° | 109.6° |
C4' | C5' | H15 | 107.7° | 109.5° |
O6' | C6' | C5' | 108.4° | 109.5° |
O6' | C6' | H16 | 109.7° | 109.4° |
O6' | C6' | H17 | 109.7° | 109.5° |
C6' | O6' | H19 | 109.5° | 114.0° |
C6' | C5' | O5' | 109.8° | 109.4° |
C6' | C5' | H15 | 107.8° | 109.5° |
C5' | C6' | H16 | 109.7° | 109.5° |
C5' | C6' | H17 | 109.7° | 109.5° |
C3' | C2' | F2 | 110.2° | 109.6° |
C3' | C2' | F3 | 113.3° | 109.5° |
C3' | C2' | C1' | 111.7° | 109.1° |
C2' | C3' | H13 | 108.2° | 109.6° |
C5' | O5' | C1' | 114.8° | 114.0° |
O5' | C5' | H15 | 108.9° | 109.5° |
F2 | C2' | F3 | 105.3° | 109.5° |
F2 | C2' | C1' | 108.6° | 109.5° |
F3 | C2' | C1' | 107.5° | 109.6° |
C2' | C1' | O5' | 109.7° | 109.5° |
C2' | C1' | F1 | 111.6° | 109.5° |
C2' | C1' | H8 | 106.4° | 109.5° |
O5' | C1' | F1 | 113.1° | 109.5° |
O5' | C1' | H8 | 106.8° | 109.5° |
F1 | C1' | H8 | 108.9° | 109.4° |
H6 | C6 | H7 | 109.5° | 109.5° |
H16 | C6' | H17 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O6 | C6 | C5 | C4 | 81.9° | 175.0° |
O6 | C6 | C5 | H6 | 119.8° | 119.9° |
O6 | C6 | C5 | H7 | 119.8° | 120.0° |
O6 | C6 | C5 | O5 | 40.8° | 65.1° |
O6 | C6 | C5 | H5 | 158.9° | 54.9° |
O6 | C6 | H6 | H7 | 120.6° | 120.0° |
O4 | C4 | C5 | C3 | 119.9° | 119.9° |
O4 | C4 | C5 | H4 | 122.1° | 120.2° |
O4 | C4 | C3 | H4 | 120.2° | 120.2° |
O4 | C4 | C5 | C6 | 54.6° | 62.6° |
O4 | C4 | C3 | O3 | 56.0° | 63.2° |
O4 | C4 | C5 | O5 | 176.8° | 177.5° |
O4 | C4 | C3 | C2 | 178.3° | 176.9° |
O4 | C4 | C3 | H3 | 62.1° | 57.0° |
O4 | C4 | C5 | H5 | 64.6° | 57.5° |
C5 | C4 | C3 | H4 | 118.0° | 119.9° |
C4 | C5 | C6 | O5 | 122.7° | 119.9° |
C4 | C5 | C6 | H5 | 119.1° | 120.1° |
C5 | C4 | C3 | O3 | 177.9° | 176.9° |
C4 | C5 | O5 | H5 | 118.4° | 119.9° |
C5 | C4 | C3 | C2 | 59.9° | 57.0° |
C4 | C5 | O5 | C1 | 60.3° | 61.2° |
C5 | C4 | C3 | H3 | 59.8° | 62.9° |
C4 | C5 | C6 | H6 | 37.9° | 55.1° |
C4 | C5 | C6 | H7 | 158.2° | 65.0° |
C5 | C4 | O4 | H11 | 180.0° | 180.0° |
C3 | C4 | C5 | C6 | 174.5° | 177.5° |
C4 | C3 | O3 | C2 | 123.2° | 119.6° |
C4 | C3 | O3 | H3 | 117.7° | 120.2° |
C3 | C4 | C5 | O5 | 63.3° | 57.6° |
C4 | C3 | C2 | H3 | 119.4° | 119.9° |
C4 | C3 | C2 | C1 | 53.5° | 57.0° |
C4 | C3 | C2 | O2 | 176.4° | 176.9° |
C4 | C3 | C2 | H2 | 65.8° | 62.9° |
C3 | C4 | C5 | H5 | 55.3° | 62.3° |
C4 | C3 | O3 | H10 | 180.0° | 179.6° |
C3 | C4 | O4 | H11 | 61.4° | 60.4° |
C6 | C5 | O5 | H5 | 118.0° | 120.1° |
C6 | C5 | O5 | C1 | 176.0° | 178.9° |
C6 | C5 | C4 | H4 | 67.5° | 57.6° |
C5 | C6 | H6 | H7 | 120.5° | 120.1° |
C5 | C6 | O6 | H12 | 180.0° | 180.0° |
O3 | C3 | C2 | H3 | 119.1° | 120.2° |
O3 | C3 | C2 | C1 | 174.9° | 176.9° |
O3 | C3 | C2 | O2 | 62.2° | 63.2° |
O3 | C3 | C2 | H2 | 55.6° | 57.0° |
O3 | C3 | C4 | H4 | 64.1° | 57.0° |
C5 | O5 | C1 | C2 | 51.4° | 61.1° |
C5 | O5 | C1 | O1 | 69.2° | 58.8° |
C5 | O5 | C1 | H1 | 170.4° | 178.9° |
O5 | C5 | C4 | H4 | 54.7° | 62.3° |
O5 | C5 | C6 | H6 | 160.6° | 175.0° |
O5 | C5 | C6 | H7 | 79.1° | 54.9° |
C3 | C2 | C1 | O5 | 48.2° | 57.6° |
C3 | C2 | C1 | O2 | 122.2° | 119.9° |
C3 | C2 | C1 | H2 | 119.6° | 119.9° |
C3 | C2 | O2 | H2 | 117.8° | 120.2° |
C3 | C2 | C1 | O1 | 74.2° | 62.4° |
C3 | C2 | C1 | H1 | 167.3° | 177.6° |
C2 | C3 | C4 | H4 | 58.1° | 62.9° |
C3 | C2 | O2 | H9 | 180.0° | 179.7° |
C2 | C3 | O3 | H10 | 56.8° | 60.0° |
O5 | C1 | C2 | O1 | 122.3° | 120.0° |
O5 | C1 | C2 | H1 | 119.2° | 120.0° |
O5 | C1 | C2 | O2 | 170.3° | 177.5° |
O5 | C1 | O1 | H1 | 119.6° | 120.1° |
O5 | C1 | O1 | C4' | 81.8° | 72.5° |
O5 | C1 | C2 | H2 | 71.5° | 62.4° |
C1 | O5 | C5 | H5 | 58.0° | 58.8° |
C1 | C2 | O2 | H2 | 117.9° | 120.1° |
C2 | C1 | O1 | H1 | 117.6° | 120.0° |
C2 | C1 | O1 | C4' | 155.4° | 167.6° |
C1 | C2 | C3 | H3 | 66.0° | 62.9° |
C1 | C2 | O2 | H9 | 55.7° | 60.0° |
O2 | C2 | C1 | O1 | 48.0° | 57.5° |
O2 | C2 | C1 | H1 | 70.5° | 62.5° |
O2 | C2 | C3 | H3 | 56.9° | 57.0° |
C1 | O1 | C4' | C3' | 94.6° | 85.3° |
C1 | O1 | C4' | C5' | 145.4° | 155.1° |
O1 | C1 | C2 | H2 | 166.2° | 177.7° |
C1 | O1 | C4' | H14 | 27.9° | 34.9° |
O1 | C4' | C3' | O3' | 71.0° | 63.3° |
O1 | C4' | C3' | C5' | 116.3° | 119.9° |
O1 | C4' | C3' | H14 | 122.8° | 120.2° |
O1 | C4' | C5' | H14 | 118.4° | 120.2° |
O1 | C4' | C5' | C6' | 69.0° | 62.5° |
O1 | C4' | C3' | C2' | 166.9° | 176.9° |
O1 | C4' | C5' | O5' | 168.3° | 177.6° |
C4' | O1 | C1 | H1 | 37.8° | 47.6° |
O1 | C4' | C3' | H13 | 46.5° | 57.0° |
O1 | C4' | C5' | H15 | 47.7° | 57.5° |
O3' | C3' | C4' | C2' | 122.1° | 119.9° |
O3' | C3' | C4' | H13 | 117.5° | 120.2° |
O3' | C3' | C4' | C5' | 172.7° | 176.8° |
O3' | C3' | C2' | H13 | 117.7° | 120.2° |
O3' | C3' | C2' | F2 | 56.1° | 57.0° |
O3' | C3' | C2' | F3 | 61.6° | 63.2° |
O3' | C3' | C2' | C1' | 176.8° | 176.9° |
O3' | C3' | C4' | H14 | 51.8° | 56.9° |
C3' | C4' | C5' | H14 | 121.4° | 119.9° |
C3' | C4' | C5' | C6' | 170.9° | 177.6° |
C4' | C3' | C2' | H13 | 120.4° | 119.9° |
C3' | C4' | C5' | O5' | 48.1° | 57.7° |
C4' | C3' | C2' | F2 | 65.8° | 62.9° |
C4' | C3' | C2' | F3 | 176.6° | 176.9° |
C4' | C3' | C2' | C1' | 55.0° | 57.0° |
C3' | C4' | C5' | H15 | 72.4° | 62.4° |
C4' | C3' | O3' | H18 | 180.0° | 179.6° |
C4' | C5' | C6' | O6' | 79.2° | 175.9° |
C4' | C5' | C6' | O5' | 124.9° | 120.0° |
C4' | C5' | C6' | H15 | 116.7° | 120.0° |
C5' | C4' | C3' | C2' | 50.6° | 57.0° |
C4' | C5' | O5' | H15 | 119.9° | 120.1° |
C4' | C5' | O5' | C1' | 51.1° | 61.2° |
C5' | C4' | C3' | H13 | 69.7° | 62.9° |
C4' | C5' | C6' | H16 | 40.6° | 55.9° |
C4' | C5' | C6' | H17 | 160.9° | 64.1° |
O6' | C6' | C5' | H16 | 119.8° | 120.0° |
O6' | C6' | C5' | H17 | 119.9° | 120.0° |
O6' | C6' | C5' | O5' | 45.6° | 64.2° |
O6' | C6' | C5' | H15 | 164.1° | 55.9° |
O6' | C6' | H16 | H17 | 120.5° | 120.0° |
C6' | C5' | O5' | H15 | 117.8° | 120.0° |
C6' | C5' | O5' | C1' | 173.4° | 178.9° |
C6' | C5' | C4' | H14 | 49.4° | 57.7° |
C5' | C6' | H16 | H17 | 120.5° | 120.0° |
C5' | C6' | O6' | H19 | 180.0° | 180.0° |
C3' | C2' | F2 | F3 | 122.5° | 120.1° |
C3' | C2' | F2 | C1' | 122.6° | 119.7° |
C3' | C2' | F3 | C1' | 123.9° | 119.7° |
C3' | C2' | C1' | O5' | 53.8° | 57.6° |
C3' | C2' | C1' | F1 | 72.4° | 62.4° |
C3' | C2' | C1' | H8 | 168.9° | 177.6° |
C2' | C3' | C4' | H14 | 70.4° | 62.9° |
C2' | C3' | O3' | H18 | 55.2° | 60.0° |
C5' | O5' | C1' | C2' | 53.2° | 61.1° |
C5' | O5' | C1' | F1 | 72.2° | 58.9° |
C5' | O5' | C1' | H8 | 168.0° | 178.8° |
O5' | C5' | C4' | H14 | 73.3° | 62.3° |
O5' | C5' | C6' | H16 | 165.5° | 175.9° |
O5' | C5' | C6' | H17 | 74.2° | 55.9° |
F2 | C2' | F3 | C1' | 115.6° | 120.1° |
F2 | C2' | C1' | O5' | 67.9° | 62.3° |
F2 | C2' | C1' | F1 | 165.9° | 177.7° |
F2 | C2' | C1' | H8 | 47.2° | 57.7° |
F2 | C2' | C3' | H13 | 173.8° | 177.2° |
F3 | C2' | C1' | O5' | 178.7° | 177.5° |
F3 | C2' | C1' | F1 | 52.5° | 57.5° |
F3 | C2' | C1' | H8 | 66.2° | 62.5° |
F3 | C2' | C3' | H13 | 56.2° | 57.0° |
C2' | C1' | O5' | F1 | 125.4° | 120.0° |
C2' | C1' | O5' | H8 | 114.9° | 120.0° |
C2' | C1' | F1 | H8 | 117.1° | 120.0° |
C1' | C2' | C3' | H13 | 65.5° | 62.9° |
O5' | C1' | F1 | H8 | 118.5° | 120.0° |
C1' | O5' | C5' | H15 | 68.8° | 58.9° |
H1 | C1 | C2 | H2 | 47.7° | 57.7° |
H2 | C2 | C3 | H3 | 174.8° | 177.2° |
H2 | C2 | O2 | H9 | 62.1° | 60.1° |
H3 | C3 | C4 | H4 | 177.8° | 177.2° |
H3 | C3 | O3 | H10 | 62.3° | 60.2° |
H4 | C4 | C5 | H5 | 173.3° | 177.8° |
H4 | C4 | O4 | H11 | 58.3° | 59.8° |
H5 | C5 | C6 | H6 | 81.2° | 65.0° |
H5 | C5 | C6 | H7 | 39.1° | 175.0° |
H6 | C6 | O6 | H12 | 60.2° | 60.1° |
H7 | C6 | O6 | H12 | 60.2° | 59.9° |
H13 | C3' | C4' | H14 | 169.3° | 177.2° |
H13 | C3' | O3' | H18 | 62.5° | 60.2° |
H14 | C4' | C5' | H15 | 166.1° | 177.7° |
H15 | C5' | C6' | H16 | 76.1° | 64.1° |
H15 | C5' | C6' | H17 | 44.2° | 175.9° |
H16 | C6' | O6' | H19 | 60.1° | 60.0° |
H17 | C6' | O6' | H19 | 60.2° | 59.9° |