FMG

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	OP2	sing	1.61Å	1.49Å
P	OP1	doub	1.48Å	1.49Å
P	OP3	sing	1.61Å	1.60Å
P	O5'	sing	1.61Å	1.59Å
O5'	C5'	sing	1.43Å	1.43Å
F1'	C2'	sing	1.40Å	1.36Å
N9	C8	sing	1.36Å	1.38Å	Aromatic
N9	C4	sing	1.37Å	1.38Å	Aromatic
N9	C1'	sing	1.47Å	1.48Å
C8	N7	doub	1.30Å	1.30Å	Aromatic
C8	H8	sing	1.08Å	1.08Å
N7	CM7	sing	1.47Å	1.49Å
N7	C5	sing	1.36Å	1.38Å	Aromatic
CM7	HM7	sing	1.09Å	1.10Å
CM7	HM7A	sing	1.09Å	1.10Å
CM7	HM7B	sing	1.09Å	1.10Å
C5	C4	doub	1.40Å	1.40Å	Aromatic
C5	C6	sing	1.41Å	1.44Å
C4	N3	sing	1.34Å	1.37Å
N3	C2	doub	1.31Å	1.35Å
C2	N2	sing	1.37Å	1.34Å
C2	N1	sing	1.36Å	1.40Å
N2	HN2	sing	0.97Å	1.00Å
N2	HN2A	sing	0.97Å	1.00Å
N1	C6	sing	1.35Å	1.41Å
N1	HN1	sing	0.97Å	1.00Å
C6	O6	doub	1.22Å	1.24Å
C2'	C1'	sing	1.55Å	1.52Å
C2'	C3'	sing	1.55Å	1.52Å
C2'	H2'	sing	1.09Å	1.10Å
C5'	C4'	sing	1.53Å	1.51Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	C3'	sing	1.54Å	1.54Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	C1'	sing	1.44Å	1.40Å
C1'	H1'	sing	1.09Å	1.10Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
OP2	HOP2	sing	0.97Å	0.95Å
OP3	HOP3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP2	P	OP1	119.6°	109.5°
OP2	P	OP3	109.2°	109.5°
OP2	P	O5'	108.7°	109.4°
P	OP2	HOP2	109.5°	114.0°
OP1	P	OP3	107.9°	109.5°
OP1	P	O5'	108.6°	109.5°
OP3	P	O5'	101.2°	109.5°
P	OP3	HOP3	109.5°	114.0°
P	O5'	C5'	119.9°	123.0°
O5'	C5'	C4'	111.6°	109.5°
O5'	C5'	H5'	108.8°	109.5°
O5'	C5'	H5'A	108.3°	109.5°
F1'	C2'	C1'	117.5°	110.5°
F1'	C2'	C3'	113.8°	110.5°
F1'	C2'	H2'	98.5°	110.5°
C8	N9	C4	105.4°	107.5°
C8	N9	C1'	128.5°	126.3°
N9	C8	N7	113.5°	109.8°
N9	C8	H8	123.2°	125.1°
C4	N9	C1'	126.1°	126.2°
N9	C4	C5	106.0°	106.1°
N9	C4	N3	125.7°	134.2°
N9	C1'	C2'	117.6°	110.4°
N9	C1'	O4'	110.9°	110.4°
N9	C1'	H1'	101.2°	110.4°
N7	C8	H8	123.2°	125.1°
C8	N7	CM7	125.1°	125.4°
C8	N7	C5	105.0°	109.3°
CM7	N7	C5	129.8°	125.3°
N7	CM7	HM7	109.5°	109.5°
N7	CM7	HM7A	109.5°	109.5°
N7	CM7	HM7B	109.4°	109.4°
N7	C5	C4	110.0°	107.2°
N7	C5	C6	131.4°	134.2°
HM7	CM7	HM7A	109.5°	109.5°
HM7	CM7	HM7B	109.5°	109.5°
HM7A	CM7	HM7B	109.5°	109.5°
C4	C5	C6	118.6°	118.6°
C5	C4	N3	128.3°	119.7°
C5	C6	N1	112.4°	118.4°
C5	C6	O6	128.3°	120.8°
C4	N3	C2	112.8°	121.1°
N3	C2	N2	120.2°	119.0°
N3	C2	N1	123.2°	121.9°
N2	C2	N1	116.6°	119.0°
C2	N2	HN2	110.2°	120.0°
C2	N2	HN2A	124.9°	120.0°
C2	N1	C6	124.8°	120.3°
C2	N1	HN1	117.6°	119.9°
HN2	N2	HN2A	124.9°	119.9°
C6	N1	HN1	117.6°	119.8°
N1	C6	O6	119.3°	120.8°
C1'	C2'	C3'	102.9°	104.0°
C1'	C2'	H2'	110.3°	110.5°
C2'	C1'	O4'	104.9°	104.8°
C2'	C1'	H1'	107.7°	110.4°
C3'	C2'	H2'	114.4°	110.7°
C2'	C3'	C4'	103.9°	104.1°
C2'	C3'	O3'	111.1°	110.5°
C2'	C3'	H3'	111.9°	110.5°
C4'	C5'	H5'	108.8°	109.4°
C4'	C5'	H5'A	108.3°	109.5°
C5'	C4'	O4'	111.1°	110.4°
C5'	C4'	C3'	113.8°	110.3°
C5'	C4'	H4'	104.4°	110.3°
H5'	C5'	H5'A	111.1°	109.5°
O4'	C4'	C3'	106.5°	104.8°
O4'	C4'	H4'	112.0°	110.4°
C4'	O4'	C1'	108.2°	105.3°
C3'	C4'	H4'	109.2°	110.5°
C4'	C3'	O3'	109.3°	110.5°
C4'	C3'	H3'	113.8°	110.6°
O4'	C1'	H1'	114.8°	110.4°
O3'	C3'	H3'	106.9°	110.5°
C3'	O3'	HO3'	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP2	P	OP1	OP3	125.5°	120.0°
OP2	P	OP1	O5'	125.6°	120.0°
OP2	P	OP3	O5'	114.5°	120.0°
OP2	P	O5'	C5'	135.2°	65.0°
OP2	P	OP3	HOP3	130.5°	60.1°
OP1	P	OP3	O5'	114.0°	120.0°
OP1	P	O5'	C5'	93.1°	54.9°
OP1	P	OP2	HOP2	8.2°	180.0°
OP1	P	OP3	HOP3	98.0°	60.0°
OP3	P	O5'	C5'	20.3°	175.0°
OP3	P	OP2	HOP2	133.2°	60.0°
P	O5'	C5'	C4'	115.9°	180.0°
P	O5'	C5'	H5'	124.1°	60.1°
P	O5'	C5'	H5'A	3.2°	59.9°
O5'	P	OP2	HOP2	117.3°	60.0°
O5'	P	OP3	HOP3	16.0°	180.0°
O5'	C5'	C4'	H5'	120.0°	120.0°
O5'	C5'	C4'	H5'A	119.1°	120.1°
O5'	C5'	H5'	H5'A	119.1°	120.0°
O5'	C5'	C4'	O4'	87.6°	66.4°
O5'	C5'	C4'	C3'	32.5°	178.2°
O5'	C5'	C4'	H4'	151.5°	55.9°
F1'	C2'	C1'	N9	34.8°	24.1°
F1'	C2'	C1'	C3'	125.8°	118.7°
F1'	C2'	C1'	H2'	111.8°	122.5°
F1'	C2'	C3'	H2'	112.1°	122.7°
F1'	C2'	C3'	C4'	103.6°	118.6°
F1'	C2'	C1'	O4'	89.0°	94.7°
F1'	C2'	C1'	H1'	148.3°	146.4°
F1'	C2'	C3'	O3'	139.0°	122.7°
F1'	C2'	C3'	H3'	19.6°	0.1°
C8	N9	C4	C1'	180.0°	179.7°
N9	C8	N7	H8	180.0°	180.0°
N9	C8	N7	CM7	179.9°	180.0°
N9	C8	N7	C5	0.0°	0.0°
C8	N9	C4	C5	0.1°	0.0°
C8	N9	C4	N3	180.0°	180.0°
C8	N9	C1'	C2'	53.4°	94.9°
C8	N9	C1'	O4'	67.3°	20.4°
C8	N9	C1'	H1'	170.4°	142.8°
C4	N9	C8	N7	0.1°	0.0°
C4	N9	C8	H8	180.0°	180.0°
N9	C4	C5	N7	0.2°	0.0°
N9	C4	C5	N3	179.9°	180.0°
N9	C4	C5	C6	179.7°	179.9°
N9	C4	N3	C2	179.9°	180.0°
C4	N9	C1'	C2'	126.6°	84.7°
C4	N9	C1'	O4'	112.7°	159.9°
C4	N9	C1'	H1'	9.6°	37.6°
C1'	N9	C8	N7	179.9°	179.7°
C1'	N9	C8	H8	0.0°	0.3°
C1'	N9	C4	C5	179.9°	179.7°
C1'	N9	C4	N3	0.0°	0.3°
N9	C1'	C2'	O4'	123.8°	118.8°
N9	C1'	C2'	H1'	113.5°	122.3°
N9	C1'	C2'	C3'	160.7°	142.8°
N9	C1'	C2'	H2'	77.0°	98.4°
N9	C1'	O4'	C4'	162.8°	159.3°
N9	C1'	O4'	H1'	114.0°	122.3°
C8	N7	CM7	C5	180.0°	179.9°
C8	N7	CM7	HM7	159.6°	89.9°
C8	N7	CM7	HM7A	39.6°	150.0°
C8	N7	CM7	HM7B	80.4°	30.1°
C8	N7	C5	C4	0.1°	0.1°
C8	N7	C5	C6	179.8°	179.9°
H8	C8	N7	CM7	0.1°	0.1°
H8	C8	N7	C5	179.9°	180.0°
N7	CM7	HM7	HM7A	120.0°	120.0°
N7	CM7	HM7	HM7B	120.0°	119.9°
N7	CM7	HM7A	HM7B	120.0°	119.9°
CM7	N7	C5	C4	179.8°	180.0°
CM7	N7	C5	C6	0.3°	0.1°
C5	N7	CM7	HM7	20.4°	90.0°
C5	N7	CM7	HM7A	140.4°	30.1°
C5	N7	CM7	HM7B	99.6°	150.0°
N7	C5	C4	C6	179.9°	179.9°
N7	C5	C4	N3	180.0°	180.0°
N7	C5	C6	N1	180.0°	180.0°
N7	C5	C6	O6	0.1°	0.1°
HM7	CM7	HM7A	HM7B	120.0°	120.1°
C5	C4	N3	C2	0.0°	0.1°
C4	C5	C6	N1	0.2°	0.1°
C4	C5	C6	O6	179.8°	179.9°
C6	C5	C4	N3	0.1°	0.1°
C5	C6	N1	C2	0.1°	0.1°
C5	C6	N1	O6	180.0°	180.0°
C5	C6	N1	HN1	179.9°	179.9°
C4	N3	C2	N2	180.0°	180.0°
C4	N3	C2	N1	0.1°	0.1°
N3	C2	N2	N1	179.9°	180.0°
N3	C2	N2	HN2	180.0°	0.1°
N3	C2	N2	HN2A	0.0°	180.0°
N3	C2	N1	C6	0.1°	0.0°
N3	C2	N1	HN1	179.9°	180.0°
C2	N2	HN2	HN2A	180.0°	179.9°
N2	C2	N1	C6	180.0°	180.0°
N2	C2	N1	HN1	0.0°	0.0°
N1	C2	N2	HN2	0.0°	179.9°
N1	C2	N2	HN2A	180.0°	0.0°
C2	N1	C6	HN1	180.0°	180.0°
C2	N1	C6	O6	179.9°	180.0°
HN1	N1	C6	O6	0.1°	0.0°
C1'	C2'	C3'	H2'	119.6°	118.7°
C2'	C1'	O4'	C4'	34.9°	40.5°
C1'	C2'	C3'	C4'	24.6°	0.0°
C2'	C1'	O4'	H1'	118.0°	118.8°
C1'	C2'	C3'	O3'	92.7°	118.6°
C1'	C2'	C3'	H3'	147.8°	118.7°
C2'	C3'	C4'	C5'	117.6°	142.8°
C2'	C3'	C4'	O4'	5.1°	24.0°
C2'	C3'	C4'	O3'	118.7°	118.6°
C2'	C3'	C4'	H3'	122.0°	118.7°
C2'	C3'	C4'	H4'	126.2°	94.9°
C3'	C2'	C1'	O4'	36.9°	24.0°
C3'	C2'	C1'	H1'	85.9°	94.9°
C2'	C3'	O3'	H3'	122.4°	122.6°
C2'	C3'	O3'	HO3'	125.0°	61.4°
H2'	C2'	C3'	C4'	144.3°	118.7°
H2'	C2'	C1'	O4'	159.3°	142.7°
H2'	C2'	C1'	H1'	36.5°	23.9°
H2'	C2'	C3'	O3'	26.9°	0.0°
H2'	C2'	C3'	H3'	92.5°	122.6°
C4'	C5'	H5'	H5'A	119.1°	120.0°
C5'	C4'	O4'	C3'	124.4°	118.8°
C5'	C4'	O4'	H4'	116.3°	122.2°
C5'	C4'	C3'	H4'	116.2°	122.2°
C5'	C4'	O4'	C1'	143.0°	159.3°
C5'	C4'	C3'	O3'	123.8°	98.5°
C5'	C4'	C3'	H3'	4.4°	24.2°
H5'	C5'	C4'	O4'	152.4°	53.5°
H5'	C5'	C4'	C3'	87.5°	61.8°
H5'	C5'	C4'	H4'	31.5°	175.8°
H5'A	C5'	C4'	O4'	31.5°	173.5°
H5'A	C5'	C4'	C3'	151.6°	58.1°
H5'A	C5'	C4'	H4'	89.4°	64.2°
O4'	C4'	C3'	H4'	121.1°	118.9°
C4'	O4'	C1'	H1'	83.1°	78.3°
O4'	C4'	C3'	O3'	113.6°	142.6°
O4'	C4'	C3'	H3'	127.1°	94.7°
C3'	C4'	O4'	C1'	18.6°	40.5°
C4'	C3'	O3'	H3'	123.5°	122.7°
C4'	C3'	O3'	HO3'	120.9°	176.1°
H4'	C4'	O4'	C1'	100.7°	78.4°
H4'	C4'	C3'	O3'	7.6°	23.7°
H4'	C4'	C3'	H3'	111.8°	146.4°
H3'	C3'	O3'	HO3'	2.6°	61.2°

Definition date:	2008-06-10
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	3D4V