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Summary Geometry Related PDB entries

FIX

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1A	HO1A	sing	0.97Å	0.95Å
C1	O1A	sing	1.34Å	1.26Å
C1	C2	sing	1.51Å	1.54Å
O1B	C1	doub	1.21Å	1.24Å
C2	O2	sing	1.43Å	1.43Å
C2	H2	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C3	C2	sing	1.53Å	1.55Å
C3	C4	sing	1.53Å	1.56Å
C3	H3	sing	1.09Å	1.10Å
O3	C3	sing	1.43Å	1.44Å
O3	HO3	sing	0.97Å	0.95Å
C4	C5	sing	1.51Å	1.56Å
C4	H4	sing	1.09Å	1.10Å
O4	C4	sing	1.43Å	1.44Å
O4	HO4	sing	0.97Å	0.95Å
C5	O5	doub	1.21Å	1.24Å
C5	C6	sing	1.49Å	1.52Å
C6	O6	doub	1.21Å	1.43Å
C6	H6	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
HO1A	O1A	C1	109.5°	117.0°
O1A	C1	C2	117.5°	120.0°
O1A	C1	O1B	125.7°	120.0°
C2	C1	O1B	116.8°	120.0°
C1	C2	O2	109.2°	109.4°
C1	C2	H2	109.7°	109.5°
C1	C2	C3	110.2°	109.5°
O2	C2	H2	108.8°	109.5°
C2	O2	HO2	109.5°	114.0°
O2	C2	C3	111.1°	109.5°
H2	C2	C3	107.8°	109.5°
C2	C3	C4	116.4°	109.5°
C2	C3	H3	104.4°	109.5°
C2	C3	O3	108.6°	109.5°
C4	C3	H3	106.7°	109.4°
C4	C3	O3	106.4°	109.5°
C3	C4	C5	113.1°	109.5°
C3	C4	H4	105.9°	109.5°
C3	C4	O4	110.4°	109.5°
H3	C3	O3	114.7°	109.5°
C3	O3	HO3	109.5°	114.0°
C5	C4	H4	108.2°	109.4°
C5	C4	O4	108.3°	109.5°
C4	C5	O5	121.1°	120.0°
C4	C5	C6	119.9°	120.0°
H4	C4	O4	111.0°	109.5°
C4	O4	HO4	109.5°	114.0°
O5	C5	C6	119.1°	120.0°
C5	C6	O6	113.3°	120.0°
C5	C6	H6	123.4°	120.0°
O6	C6	H6	123.3°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
HO1A	O1A	C1	C2	179.9°	180.0°
HO1A	O1A	C1	O1B	0.0°	0.0°
O1A	C1	C2	O1B	179.9°	180.0°
O1A	C1	C2	O2	21.0°	175.0°
O1A	C1	C2	H2	140.1°	55.0°
O1A	C1	C2	C3	101.4°	65.0°
C1	C2	O2	H2	119.7°	120.0°
C1	C2	O2	C3	121.8°	120.0°
C1	C2	H2	C3	120.0°	120.0°
C1	C2	O2	HO2	173.8°	60.0°
C1	C2	C3	C4	177.5°	180.0°
C1	C2	C3	H3	65.3°	60.0°
C1	C2	C3	O3	57.5°	60.0°
O1B	C1	C2	O2	158.9°	5.0°
O1B	C1	C2	H2	39.8°	124.9°
O1B	C1	C2	C3	78.7°	115.1°
O2	C2	H2	C3	120.6°	120.0°
O2	C2	C3	C4	61.3°	60.0°
O2	C2	C3	H3	55.9°	60.0°
O2	C2	C3	O3	178.7°	180.0°
H2	C2	O2	HO2	66.5°	180.0°
H2	C2	C3	C4	57.8°	60.0°
H2	C2	C3	H3	175.0°	180.0°
H2	C2	C3	O3	62.2°	60.0°
HO2	O2	C2	C3	52.0°	60.0°
C2	C3	C4	H3	115.9°	120.0°
C2	C3	C4	O3	121.2°	120.0°
C2	C3	H3	O3	118.7°	120.0°
C2	C3	O3	HO3	51.5°	60.0°
C2	C3	C4	C5	72.2°	175.0°
C2	C3	C4	H4	46.1°	65.0°
C2	C3	C4	O4	166.3°	55.0°
C4	C3	H3	O3	117.5°	120.0°
C4	C3	O3	HO3	177.6°	60.1°
C3	C4	C5	H4	117.0°	120.0°
C3	C4	C5	O4	122.6°	120.0°
C3	C4	H4	O4	119.8°	120.0°
C3	C4	O4	HO4	107.2°	60.0°
C3	C4	C5	O5	35.3°	105.0°
C3	C4	C5	C6	144.8°	75.0°
H3	C3	O3	HO3	64.8°	180.0°
H3	C3	C4	C5	43.7°	65.0°
H3	C3	C4	H4	162.0°	55.0°
H3	C3	C4	O4	77.7°	175.0°
O3	C3	C4	C5	166.6°	55.0°
O3	C3	C4	H4	75.1°	174.9°
O3	C3	C4	O4	45.1°	65.0°
C5	C4	H4	O4	118.6°	120.0°
C5	C4	O4	HO4	17.1°	60.0°
C4	C5	O5	C6	179.9°	179.9°
C4	C5	C6	O6	55.3°	180.0°
C4	C5	C6	H6	124.7°	0.0°
H4	C4	O4	HO4	135.7°	180.0°
H4	C4	C5	O5	152.3°	135.0°
H4	C4	C5	C6	27.8°	45.0°
O4	C4	C5	O5	87.3°	15.0°
O4	C4	C5	C6	92.6°	164.9°
O5	C5	C6	O6	124.9°	0.1°
O5	C5	C6	H6	55.1°	180.0°
C5	C6	O6	H6	180.0°	179.9°

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