FFD

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1P	P	doub	1.48Å	1.49Å
P	O3P	sing	1.61Å	1.59Å
P	O2P	sing	1.61Å	1.48Å
P	O5'	sing	1.61Å	1.59Å
F	C1	sing	1.35Å	1.35Å
O5'	C5'	sing	1.43Å	1.41Å
C1	C	doub	1.38Å	1.39Å	Aromatic
C1	C3	sing	1.38Å	1.39Å	Aromatic
C	C6	sing	1.38Å	1.38Å	Aromatic
C3	C4	doub	1.38Å	1.39Å	Aromatic
C5'	C4'	sing	1.53Å	1.52Å
O4'	C4'	sing	1.44Å	1.43Å
O4'	C1'	sing	1.44Å	1.37Å
C6	C1'	sing	1.51Å	1.51Å
C6	C5	doub	1.38Å	1.39Å	Aromatic
C3'	C4'	sing	1.55Å	1.53Å
C3'	C2'	sing	1.55Å	1.51Å
C3'	O3'	sing	1.43Å	1.42Å
C4	C5	sing	1.38Å	1.39Å	Aromatic
C2'	C1'	sing	1.54Å	1.53Å
O3P	HOP3	sing	0.97Å	0.95Å
C	H	sing	1.08Å	1.08Å
C3	H3	sing	1.08Å	1.08Å
C4	H4	sing	1.08Å	1.08Å
C5	H5	sing	1.08Å	1.08Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	H2'1	sing	1.09Å	1.10Å
C2'	H2'2	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	H3T	sing	0.97Å	0.95Å
C4'	H4'	sing	1.09Å	1.10Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
O2P	HOP2	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1P	P	O3P	108.0°	109.5°
O1P	P	O2P	120.4°	109.5°
O1P	P	O5'	107.1°	109.4°
O3P	P	O2P	108.0°	109.5°
O3P	P	O5'	102.7°	109.5°
P	O3P	HOP3	109.5°	114.0°
O2P	P	O5'	109.3°	109.5°
P	O2P	HOP2	109.5°	114.0°
P	O5'	C5'	119.8°	123.0°
F	C1	C	119.9°	120.0°
F	C1	C3	119.9°	120.0°
O5'	C5'	C4'	109.8°	109.5°
O5'	C5'	H5'1	109.4°	109.5°
O5'	C5'	H5'2	109.3°	109.5°
C	C1	C3	120.2°	120.0°
C1	C	C6	119.7°	120.0°
C1	C	H	120.1°	120.0°
C1	C3	C4	120.1°	120.0°
C1	C3	H3	119.9°	120.1°
C	C6	C1'	119.6°	120.0°
C	C6	C5	120.4°	120.0°
C6	C	H	120.2°	120.0°
C3	C4	C5	119.7°	120.0°
C4	C3	H3	119.9°	120.0°
C3	C4	H4	120.1°	120.0°
C5'	C4'	O4'	109.6°	110.4°
C5'	C4'	C3'	115.0°	110.4°
C5'	C4'	H4'	104.2°	110.4°
C4'	C5'	H5'1	109.3°	109.4°
C4'	C5'	H5'2	109.3°	109.4°
C4'	O4'	C1'	106.5°	105.3°
O4'	C4'	C3'	104.7°	104.8°
O4'	C4'	H4'	114.6°	110.4°
O4'	C1'	C6	107.5°	110.4°
O4'	C1'	C2'	105.3°	104.9°
O4'	C1'	H1'	114.6°	110.4°
C1'	C6	C5	120.0°	120.0°
C6	C1'	C2'	112.7°	110.4°
C6	C1'	H1'	107.3°	110.3°
C6	C5	C4	119.9°	120.0°
C6	C5	H5	120.1°	120.0°
C4'	C3'	C2'	103.8°	104.0°
C4'	C3'	O3'	109.2°	110.5°
C4'	C3'	H3'	114.1°	110.5°
C3'	C4'	H4'	109.1°	110.3°
C2'	C3'	O3'	111.8°	110.6°
C3'	C2'	C1'	103.7°	104.1°
C3'	C2'	H2'1	111.4°	110.5°
C3'	C2'	H2'2	112.6°	110.7°
C2'	C3'	H3'	111.6°	110.5°
O3'	C3'	H3'	106.4°	110.6°
C3'	O3'	H3T	109.5°	114.0°
C5	C4	H4	120.1°	120.0°
C4	C5	H5	120.1°	120.0°
C2'	C1'	H1'	109.6°	110.3°
C1'	C2'	H2'1	111.4°	110.5°
C1'	C2'	H2'2	112.7°	110.5°
H2'1	C2'	H2'2	105.1°	110.4°
H5'1	C5'	H5'2	109.8°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1P	P	O3P	O2P	131.6°	120.0°
O1P	P	O3P	O5'	112.9°	120.0°
O1P	P	O2P	O5'	124.4°	120.0°
O1P	P	O5'	C5'	176.1°	55.0°
O1P	P	O3P	HOP3	37.1°	179.9°
O1P	P	O2P	HOP2	154.2°	60.0°
O3P	P	O2P	O5'	111.0°	120.0°
O3P	P	O5'	C5'	70.3°	64.9°
O3P	P	O2P	HOP2	81.3°	60.0°
O2P	P	O5'	C5'	44.2°	175.0°
O2P	P	O3P	HOP3	94.5°	59.9°
P	O5'	C5'	C4'	167.6°	180.0°
O5'	P	O3P	HOP3	150.1°	60.1°
P	O5'	C5'	H5'1	72.4°	60.0°
P	O5'	C5'	H5'2	47.8°	60.1°
O5'	P	O2P	HOP2	29.8°	179.9°
F	C1	C	C3	180.0°	179.9°
F	C1	C	C6	179.9°	179.9°
F	C1	C3	C4	180.0°	180.0°
F	C1	C	H	0.1°	0.3°
F	C1	C3	H3	0.0°	0.0°
O5'	C5'	C4'	H5'1	120.0°	120.0°
O5'	C5'	C4'	H5'2	119.8°	120.0°
O5'	C5'	C4'	O4'	56.9°	66.4°
O5'	C5'	C4'	C3'	60.6°	178.1°
O5'	C5'	C4'	H4'	180.0°	55.8°
O5'	C5'	H5'1	H5'2	119.9°	120.0°
C1	C	C6	H	180.0°	179.7°
C	C1	C3	C4	0.0°	0.0°
C1	C	C6	C1'	179.7°	179.7°
C1	C	C6	C5	0.1°	0.0°
C	C1	C3	H3	180.0°	179.9°
C3	C1	C	C6	0.1°	0.0°
C1	C3	C4	H3	180.0°	180.0°
C1	C3	C4	C5	0.3°	0.1°
C3	C1	C	H	179.9°	179.7°
C1	C3	C4	H4	179.7°	180.0°
C	C6	C1'	O4'	46.1°	142.9°
C	C6	C1'	C5	179.6°	179.7°
C	C6	C5	C4	0.5°	0.0°
C	C6	C1'	C2'	69.5°	101.6°
C	C6	C5	H5	179.5°	180.0°
C	C6	C1'	H1'	169.8°	20.6°
C3	C4	C5	C6	0.5°	0.0°
C3	C4	C5	H4	180.0°	180.0°
C3	C4	C5	H5	179.4°	180.0°
C5'	C4'	O4'	C3'	123.8°	118.9°
C5'	C4'	O4'	H4'	116.7°	122.3°
C5'	C4'	O4'	C1'	161.8°	159.3°
C5'	C4'	C3'	H4'	116.6°	122.3°
C5'	C4'	C3'	C2'	139.4°	142.8°
C5'	C4'	C3'	O3'	101.1°	98.5°
C5'	C4'	C3'	H3'	17.8°	24.2°
C4'	C5'	H5'1	H5'2	119.8°	120.0°
C4'	O4'	C1'	C6	161.3°	159.3°
O4'	C4'	C3'	H4'	123.1°	118.8°
O4'	C4'	C3'	C2'	19.2°	23.9°
O4'	C4'	C3'	O3'	138.6°	142.6°
C4'	O4'	C1'	C2'	40.9°	40.4°
C4'	O4'	C1'	H1'	79.5°	78.4°
O4'	C4'	C3'	H3'	102.5°	94.6°
O4'	C4'	C5'	H5'1	176.9°	173.5°
O4'	C4'	C5'	H5'2	62.9°	53.5°
O4'	C1'	C6	C2'	115.5°	115.5°
O4'	C1'	C6	H1'	123.7°	122.3°
O4'	C1'	C6	C5	134.3°	36.8°
C1'	O4'	C4'	C3'	38.0°	40.4°
O4'	C1'	C2'	C3'	27.0°	23.9°
O4'	C1'	C2'	H1'	123.7°	118.9°
O4'	C1'	C2'	H2'1	93.0°	142.6°
O4'	C1'	C2'	H2'2	149.1°	94.9°
C1'	O4'	C4'	H4'	81.5°	78.4°
C6	C1'	C2'	C3'	143.9°	142.8°
C1'	C6	C5	C4	179.9°	179.6°
C6	C1'	C2'	H1'	119.5°	122.2°
C1'	C6	C	H	0.3°	0.1°
C1'	C6	C5	H5	0.1°	0.3°
C6	C1'	C2'	H2'1	23.9°	98.5°
C6	C1'	C2'	H2'2	94.0°	24.0°
C6	C5	C4	H5	180.0°	180.0°
C5	C6	C1'	C2'	110.1°	78.7°
C5	C6	C	H	179.9°	179.7°
C6	C5	C4	H4	179.5°	180.0°
C5	C6	C1'	H1'	10.6°	159.0°
C4'	C3'	C2'	O3'	117.6°	118.7°
C4'	C3'	C2'	H3'	123.3°	118.6°
C4'	C3'	O3'	H3'	123.6°	122.7°
C4'	C3'	C2'	C1'	4.0°	0.0°
C4'	C3'	C2'	H2'1	116.0°	118.7°
C4'	C3'	C2'	H2'2	126.1°	118.8°
C4'	C3'	O3'	H3T	76.2°	180.0°
C3'	C4'	C5'	H5'1	59.4°	58.1°
C3'	C4'	C5'	H5'2	179.5°	61.9°
C2'	C3'	O3'	H3'	122.1°	122.7°
C3'	C2'	C1'	H2'1	120.0°	118.6°
C3'	C2'	C1'	H2'2	122.1°	118.8°
C3'	C2'	C1'	H1'	96.7°	95.0°
C3'	C2'	H2'1	H2'2	122.3°	122.7°
C2'	C3'	O3'	H3T	38.1°	65.4°
C2'	C3'	C4'	H4'	103.9°	94.9°
O3'	C3'	C2'	C1'	113.7°	118.7°
O3'	C3'	C2'	H2'1	126.3°	0.0°
O3'	C3'	C2'	H2'2	8.5°	122.6°
O3'	C3'	C4'	H4'	15.5°	23.8°
C5	C4	C3	H3	179.7°	179.9°
C1'	C2'	H2'1	H2'2	122.4°	122.6°
C1'	C2'	C3'	H3'	127.3°	118.6°
H3	C3	C4	H4	0.3°	0.0°
H4	C4	C5	H5	0.5°	0.0°
H1'	C1'	C2'	H2'1	143.3°	23.7°
H1'	C1'	C2'	H2'2	25.4°	146.2°
H2'1	C2'	C3'	H3'	7.3°	122.7°
H2'2	C2'	C3'	H3'	110.6°	0.2°
H3'	C3'	O3'	H3T	160.2°	57.3°
H3'	C3'	C4'	H4'	134.4°	146.6°
H4'	C4'	C5'	H5'1	60.0°	64.2°
H4'	C4'	C5'	H5'2	60.1°	175.8°

Definition date:	2007-04-16
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB