F7O
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O1' | C1' | sing | 1.43Å | 1.44Å | |
C1' | C2' | sing | 1.53Å | 1.53Å | |
C2' | C3' | sing | 1.53Å | 1.55Å | |
C2' | N2' | sing | 1.47Å | 1.49Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
OP2 | P | doub | 1.48Å | 1.49Å | |
O3' | P | sing | 1.61Å | 1.61Å | |
N2' | C2A | sing | 1.35Å | 1.33Å | |
O2A | C2A | doub | 1.21Å | 1.23Å | |
P | OP1 | sing | 1.61Å | 1.50Å | |
C2 | N3 | doub | 1.32Å | 1.49Å | Aromatic |
C2 | N1 | sing | 1.32Å | 1.48Å | Aromatic |
C2A | C2B | sing | 1.51Å | 1.50Å | |
N3 | C4 | sing | 1.33Å | 1.34Å | Aromatic |
N1 | C6 | doub | 1.33Å | 1.34Å | Aromatic |
C4 | C5 | doub | 1.40Å | 1.33Å | Aromatic |
C4 | N9 | sing | 1.37Å | 1.32Å | Aromatic |
C6 | C5 | sing | 1.41Å | 1.34Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.32Å | |
C2B | N9 | sing | 1.46Å | 1.45Å | |
C5 | N7 | sing | 1.35Å | 1.34Å | Aromatic |
N9 | C8 | sing | 1.36Å | 1.31Å | Aromatic |
N7 | C8 | doub | 1.30Å | 1.33Å | Aromatic |
P | OP3 | sing | 1.61Å | 1.49Å | |
OP1 | H1 | sing | 0.97Å | 0.95Å | |
C3' | H2 | sing | 1.09Å | 1.10Å | |
C3' | H3 | sing | 1.09Å | 1.10Å | |
C2' | H4 | sing | 1.09Å | 1.10Å | |
C1' | H5 | sing | 1.09Å | 1.10Å | |
C1' | H6 | sing | 1.09Å | 1.10Å | |
O1' | H7 | sing | 0.97Å | 0.95Å | |
N2' | H8 | sing | 0.97Å | 1.00Å | |
C2B | H9 | sing | 1.09Å | 1.10Å | |
C2B | H10 | sing | 1.09Å | 1.10Å | |
C8 | H11 | sing | 1.08Å | 1.08Å | |
C2 | H12 | sing | 1.08Å | 1.08Å | |
N6 | H13 | sing | 0.97Å | 1.00Å | |
N6 | H14 | sing | 0.97Å | 1.00Å | |
OP3 | H15 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O1' | C1' | C2' | 104.5° | 109.5° |
O1' | C1' | H5 | 110.7° | 109.5° |
O1' | C1' | H6 | 110.7° | 109.5° |
C1' | O1' | H7 | 109.5° | 114.0° |
C1' | C2' | C3' | 107.7° | 109.5° |
C1' | C2' | N2' | 111.9° | 109.4° |
C1' | C2' | H4 | 108.4° | 109.4° |
C2' | C1' | H5 | 110.7° | 109.5° |
C2' | C1' | H6 | 110.7° | 109.5° |
C3' | C2' | N2' | 111.8° | 109.5° |
C2' | C3' | O3' | 109.4° | 109.5° |
C2' | C3' | H2 | 109.4° | 109.5° |
C2' | C3' | H3 | 109.5° | 109.5° |
C3' | C2' | H4 | 108.0° | 109.5° |
C2' | N2' | C2A | 120.3° | 120.0° |
N2' | C2' | H4 | 108.9° | 109.5° |
C2' | N2' | H8 | 119.8° | 119.9° |
C3' | O3' | P | 127.4° | 123.0° |
O3' | C3' | H2 | 109.5° | 109.5° |
O3' | C3' | H3 | 109.5° | 109.4° |
OP2 | P | O3' | 113.8° | 109.5° |
OP2 | P | OP1 | 134.1° | 109.4° |
OP2 | P | OP3 | 98.6° | 109.5° |
O3' | P | OP1 | 99.9° | 109.5° |
O3' | P | OP3 | 97.1° | 109.5° |
N2' | C2A | O2A | 125.1° | 120.0° |
N2' | C2A | C2B | 114.8° | 120.0° |
C2A | N2' | H8 | 119.8° | 120.0° |
O2A | C2A | C2B | 120.0° | 120.0° |
OP1 | P | OP3 | 107.4° | 109.5° |
P | OP1 | H1 | 109.5° | 114.0° |
N3 | C2 | N1 | 110.7° | 122.5° |
C2 | N3 | C4 | 122.3° | 120.6° |
N3 | C2 | H12 | 124.7° | 118.7° |
C2 | N1 | C6 | 120.9° | 121.1° |
N1 | C2 | H12 | 124.6° | 118.8° |
C2A | C2B | N9 | 108.8° | 109.5° |
C2A | C2B | H9 | 109.7° | 109.4° |
C2A | C2B | H10 | 109.6° | 109.5° |
N3 | C4 | C5 | 122.2° | 119.1° |
N3 | C4 | N9 | 130.1° | 134.9° |
N1 | C6 | C5 | 123.6° | 118.5° |
N1 | C6 | N6 | 120.3° | 120.7° |
C5 | C4 | N9 | 107.7° | 106.0° |
C4 | C5 | C6 | 120.1° | 118.2° |
C4 | C5 | N7 | 107.2° | 107.2° |
C4 | N9 | C2B | 120.2° | 126.3° |
C4 | N9 | C8 | 109.4° | 107.4° |
C5 | C6 | N6 | 116.0° | 120.8° |
C6 | C5 | N7 | 132.7° | 134.7° |
C6 | N6 | H13 | 109.5° | 120.0° |
C6 | N6 | H14 | 109.5° | 120.0° |
C2B | N9 | C8 | 130.4° | 126.3° |
N9 | C2B | H9 | 109.6° | 109.4° |
N9 | C2B | H10 | 109.6° | 109.5° |
C5 | N7 | C8 | 108.6° | 109.4° |
N9 | C8 | N7 | 107.0° | 110.0° |
N9 | C8 | H11 | 126.5° | 125.0° |
N7 | C8 | H11 | 126.5° | 125.0° |
P | OP3 | H15 | 109.5° | 114.0° |
H2 | C3' | H3 | 109.5° | 109.5° |
H5 | C1' | H6 | 109.5° | 109.5° |
H9 | C2B | H10 | 109.5° | 109.5° |
H13 | N6 | H14 | 109.5° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O1' | C1' | C2' | H5 | 119.2° | 120.0° |
O1' | C1' | C2' | H6 | 119.2° | 120.0° |
O1' | C1' | C2' | C3' | 55.4° | 55.0° |
O1' | C1' | C2' | N2' | 178.7° | 65.0° |
O1' | C1' | C2' | H4 | 61.2° | 175.0° |
O1' | C1' | H5 | H6 | 122.3° | 120.0° |
C1' | C2' | C3' | N2' | 123.4° | 120.0° |
C1' | C2' | C3' | H4 | 116.9° | 120.0° |
C1' | C2' | N2' | H4 | 119.8° | 119.9° |
C1' | C2' | C3' | O3' | 65.1° | 55.0° |
C1' | C2' | N2' | C2A | 145.7° | 85.0° |
C1' | C2' | C3' | H2 | 54.9° | 175.0° |
C1' | C2' | C3' | H3 | 174.9° | 65.0° |
C2' | C1' | H5 | H6 | 122.3° | 120.0° |
C2' | C1' | O1' | H7 | 180.0° | 180.0° |
C1' | C2' | N2' | H8 | 34.3° | 95.0° |
C3' | C2' | N2' | H4 | 119.3° | 120.1° |
C2' | C3' | O3' | H2 | 120.0° | 120.0° |
C2' | C3' | O3' | H3 | 120.0° | 120.0° |
C2' | C3' | O3' | P | 175.7° | 180.0° |
C3' | C2' | N2' | C2A | 93.4° | 155.0° |
C2' | C3' | H2 | H3 | 120.0° | 120.0° |
C3' | C2' | C1' | H5 | 174.6° | 175.0° |
C3' | C2' | C1' | H6 | 63.8° | 65.0° |
C3' | C2' | N2' | H8 | 86.6° | 24.9° |
N2' | C2' | C3' | O3' | 58.3° | 65.0° |
C2' | N2' | C2A | H8 | 180.0° | 179.9° |
C2' | N2' | C2A | O2A | 1.9° | 0.0° |
C2' | N2' | C2A | C2B | 178.8° | 179.9° |
N2' | C2' | C3' | H2 | 178.3° | 55.0° |
N2' | C2' | C3' | H3 | 61.7° | 175.1° |
N2' | C2' | C1' | H5 | 62.1° | 55.0° |
N2' | C2' | C1' | H6 | 59.5° | 175.0° |
C3' | O3' | P | OP2 | 27.5° | 55.0° |
C3' | O3' | P | OP1 | 175.7° | 65.0° |
C3' | O3' | P | OP3 | 75.2° | 175.0° |
O3' | C3' | H2 | H3 | 120.0° | 120.0° |
O3' | C3' | C2' | H4 | 178.1° | 175.0° |
OP2 | P | O3' | OP1 | 148.2° | 120.0° |
OP2 | P | O3' | OP3 | 102.7° | 120.0° |
OP2 | P | OP1 | OP3 | 121.5° | 120.0° |
OP2 | P | OP1 | H1 | 0.0° | 180.0° |
OP2 | P | OP3 | H15 | 0.0° | 59.9° |
O3' | P | OP1 | OP3 | 100.7° | 120.0° |
O3' | P | OP1 | H1 | 137.8° | 60.0° |
P | O3' | C3' | H2 | 64.3° | 60.0° |
P | O3' | C3' | H3 | 55.8° | 60.0° |
O3' | P | OP3 | H15 | 115.5° | 179.9° |
N2' | C2A | O2A | C2B | 176.8° | 180.0° |
N2' | C2A | C2B | N9 | 164.1° | 180.0° |
C2A | N2' | C2' | H4 | 25.9° | 34.9° |
N2' | C2A | C2B | H9 | 44.2° | 60.0° |
N2' | C2A | C2B | H10 | 76.0° | 60.0° |
O2A | C2A | C2B | N9 | 18.8° | 0.0° |
O2A | C2A | N2' | H8 | 178.1° | 180.0° |
O2A | C2A | C2B | H9 | 138.7° | 120.0° |
O2A | C2A | C2B | H10 | 101.1° | 120.0° |
OP1 | P | OP3 | H15 | 141.7° | 60.0° |
N3 | C2 | N1 | H12 | 180.0° | 179.9° |
N3 | C2 | N1 | C6 | 5.0° | 0.2° |
C2 | N3 | C4 | C5 | 0.6° | 0.0° |
C2 | N3 | C4 | N9 | 178.7° | 179.5° |
N1 | C2 | N3 | C4 | 2.4° | 0.0° |
C2 | N1 | C6 | C5 | 6.2° | 0.4° |
C2 | N1 | C6 | N6 | 177.3° | 180.0° |
C2A | C2B | N9 | C4 | 85.3° | 84.7° |
C2A | C2B | N9 | H9 | 119.9° | 120.0° |
C2A | C2B | N9 | H10 | 119.9° | 120.0° |
C2A | C2B | N9 | C8 | 91.7° | 95.0° |
C2B | C2A | N2' | H8 | 1.2° | 0.0° |
C2A | C2B | H9 | H10 | 120.3° | 120.0° |
N3 | C4 | C5 | N9 | 178.5° | 179.7° |
N3 | C4 | C5 | C6 | 1.1° | 0.2° |
N3 | C4 | N9 | C2B | 1.0° | 0.3° |
N3 | C4 | C5 | N7 | 178.8° | 179.9° |
N3 | C4 | N9 | C8 | 178.6° | 180.0° |
C4 | N3 | C2 | H12 | 177.6° | 180.0° |
N1 | C6 | C5 | C4 | 4.0° | 0.4° |
N1 | C6 | C5 | N6 | 176.7° | 179.6° |
N1 | C6 | C5 | N7 | 179.0° | 179.9° |
C6 | N1 | C2 | H12 | 174.9° | 179.7° |
N1 | C6 | N6 | H13 | 0.0° | 0.0° |
N1 | C6 | N6 | H14 | 120.0° | 180.0° |
C4 | C5 | C6 | N7 | 177.0° | 179.7° |
C4 | C5 | C6 | N6 | 179.3° | 180.0° |
C5 | C4 | N9 | C2B | 179.4° | 179.9° |
C5 | C4 | N9 | C8 | 3.1° | 0.4° |
C4 | C5 | N7 | C8 | 1.4° | 0.3° |
N9 | C4 | C5 | C6 | 179.6° | 179.9° |
C4 | N9 | C2B | C8 | 176.9° | 179.7° |
N9 | C4 | C5 | N7 | 2.7° | 0.4° |
C4 | N9 | C8 | N7 | 2.2° | 0.2° |
C4 | N9 | C2B | H9 | 34.7° | 35.3° |
C4 | N9 | C2B | H10 | 154.9° | 155.3° |
C4 | N9 | C8 | H11 | 177.8° | 179.8° |
C6 | C5 | N7 | C8 | 178.6° | 180.0° |
C5 | C6 | N6 | H13 | 176.8° | 179.6° |
C5 | C6 | N6 | H14 | 56.8° | 0.4° |
N6 | C6 | C5 | N7 | 2.3° | 0.4° |
C6 | N6 | H13 | H14 | 120.0° | 180.0° |
C2B | N9 | C8 | N7 | 179.4° | 180.0° |
N9 | C2B | H9 | H10 | 120.3° | 120.0° |
C2B | N9 | C8 | H11 | 0.6° | 0.0° |
C5 | N7 | C8 | N9 | 0.5° | 0.1° |
C5 | N7 | C8 | H11 | 179.5° | 180.0° |
N9 | C8 | N7 | H11 | 180.0° | 180.0° |
C8 | N9 | C2B | H9 | 148.4° | 145.0° |
C8 | N9 | C2B | H10 | 28.2° | 25.0° |
OP3 | P | OP1 | H1 | 121.5° | 60.0° |
H2 | C3' | C2' | H4 | 62.0° | 65.0° |
H3 | C3' | C2' | H4 | 58.1° | 55.0° |
H4 | C2' | C1' | H5 | 58.0° | 65.0° |
H4 | C2' | C1' | H6 | 179.6° | 55.0° |
H4 | C2' | N2' | H8 | 154.1° | 145.0° |
H5 | C1' | O1' | H7 | 60.8° | 60.0° |
H6 | C1' | O1' | H7 | 60.8° | 60.0° |