F7K
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C6' | C8' | sing | 1.57Å | 1.50Å | |
C6' | C7' | sing | 1.54Å | 1.52Å | |
C6' | C5' | sing | 1.54Å | 1.50Å | |
C8' | C5' | sing | 1.53Å | 1.50Å | |
C7' | C3' | sing | 1.54Å | 1.55Å | |
C5' | O5' | sing | 1.43Å | 1.41Å | |
C5' | C4' | sing | 1.54Å | 1.52Å | |
O3' | C3' | sing | 1.43Å | 1.43Å | |
C3' | C4' | sing | 1.56Å | 1.52Å | |
C3' | C2' | sing | 1.54Å | 1.53Å | |
O6 | C6 | doub | 1.22Å | 1.23Å | |
C4' | O4' | sing | 1.44Å | 1.43Å | |
N7 | C5 | sing | 1.36Å | 1.39Å | Aromatic |
N7 | C8 | doub | 1.30Å | 1.31Å | Aromatic |
C6 | C5 | sing | 1.41Å | 1.44Å | |
C6 | N1 | sing | 1.35Å | 1.41Å | |
C2' | C1' | sing | 1.54Å | 1.53Å | |
C5 | C4 | doub | 1.40Å | 1.38Å | Aromatic |
C8 | N9 | sing | 1.36Å | 1.37Å | Aromatic |
N1 | C2 | sing | 1.36Å | 1.39Å | |
C4 | N9 | sing | 1.37Å | 1.37Å | Aromatic |
C4 | N3 | sing | 1.34Å | 1.37Å | |
N9 | C1' | sing | 1.46Å | 1.48Å | |
C2 | N3 | doub | 1.31Å | 1.35Å | |
C2 | N2 | sing | 1.37Å | 1.34Å | |
O4' | C1' | sing | 1.44Å | 1.43Å | |
C8 | H8 | sing | 1.08Å | 1.08Å | |
O5' | HO5' | sing | 0.97Å | 0.95Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
N1 | H1 | sing | 0.97Å | 1.00Å | |
N2 | H21 | sing | 0.97Å | 1.00Å | |
N2 | H22 | sing | 0.97Å | 1.00Å | |
C2' | H2'' | sing | 1.09Å | 1.10Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C7' | H7'' | sing | 1.09Å | 1.10Å | |
C7' | H7' | sing | 1.09Å | 1.10Å | |
C6' | H6' | sing | 1.09Å | 1.10Å | |
C8' | H8'' | sing | 1.09Å | 1.10Å | |
C8' | H8' | sing | 1.09Å | 1.10Å | |
O3' | H2 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C8' | C6' | C7' | 116.0° | 118.7° |
C8' | C6' | C5' | 59.9° | 59.0° |
C6' | C8' | C5' | 60.2° | 59.4° |
C8' | C6' | H6' | 119.6° | 119.1° |
C6' | C8' | H8'' | 120.0° | 117.4° |
C6' | C8' | H8' | 119.9° | 117.5° |
C7' | C6' | C5' | 108.3° | 106.6° |
C6' | C7' | C3' | 107.4° | 104.8° |
C6' | C7' | H7'' | 110.0° | 110.4° |
C6' | C7' | H7' | 110.0° | 110.5° |
C7' | C6' | H6' | 119.1° | 117.2° |
C6' | C5' | C8' | 59.9° | 61.6° |
C6' | C5' | O5' | 119.6° | 121.0° |
C6' | C5' | C4' | 107.9° | 107.1° |
C5' | C6' | H6' | 119.5° | 122.5° |
C8' | C5' | O5' | 119.9° | 119.1° |
C8' | C5' | C4' | 117.2° | 118.2° |
C5' | C8' | H8'' | 120.0° | 118.2° |
C5' | C8' | H8' | 119.9° | 117.3° |
C7' | C3' | O3' | 111.0° | 114.2° |
C7' | C3' | C4' | 105.7° | 103.1° |
C7' | C3' | C2' | 113.8° | 108.7° |
C3' | C7' | H7'' | 110.0° | 110.4° |
C3' | C7' | H7' | 110.0° | 110.4° |
O5' | C5' | C4' | 118.2° | 117.3° |
C5' | O5' | HO5' | 109.5° | 113.9° |
C5' | C4' | C3' | 108.2° | 104.4° |
C5' | C4' | O4' | 109.6° | 109.0° |
C5' | C4' | H4' | 109.7° | 112.6° |
O3' | C3' | C4' | 109.4° | 113.8° |
O3' | C3' | C2' | 112.2° | 113.5° |
C3' | O3' | H2 | 109.5° | 114.0° |
C4' | C3' | C2' | 104.3° | 102.4° |
C3' | C4' | O4' | 108.4° | 103.9° |
C3' | C4' | H4' | 109.8° | 113.4° |
C3' | C2' | C1' | 104.7° | 104.6° |
C3' | C2' | H2'' | 110.6° | 110.4° |
C3' | C2' | H2' | 110.7° | 110.4° |
O6 | C6 | C5 | 127.8° | 120.8° |
O6 | C6 | N1 | 120.1° | 120.8° |
C4' | O4' | C1' | 110.3° | 107.7° |
O4' | C4' | H4' | 111.0° | 112.7° |
C5 | N7 | C8 | 103.8° | 109.3° |
N7 | C5 | C6 | 130.2° | 134.2° |
N7 | C5 | C4 | 110.3° | 107.3° |
N7 | C8 | N9 | 114.2° | 109.9° |
N7 | C8 | H8 | 122.9° | 125.1° |
C5 | C6 | N1 | 112.1° | 118.3° |
C6 | C5 | C4 | 119.5° | 118.6° |
C6 | N1 | C2 | 124.7° | 120.3° |
C6 | N1 | H1 | 117.7° | 119.8° |
C2' | C1' | N9 | 110.9° | 110.0° |
C2' | C1' | O4' | 107.9° | 107.4° |
C2' | C1' | H1' | 109.1° | 109.8° |
C1' | C2' | H2'' | 110.6° | 110.4° |
C1' | C2' | H2' | 110.6° | 110.4° |
C5 | C4 | N9 | 106.3° | 106.1° |
C5 | C4 | N3 | 127.7° | 119.7° |
C8 | N9 | C4 | 105.3° | 107.5° |
C8 | N9 | C1' | 129.3° | 126.3° |
N9 | C8 | H8 | 122.9° | 125.1° |
N1 | C2 | N3 | 123.0° | 121.9° |
N1 | C2 | N2 | 116.9° | 119.0° |
C2 | N1 | H1 | 117.7° | 119.9° |
N9 | C4 | N3 | 126.0° | 134.2° |
C4 | N9 | C1' | 125.3° | 126.2° |
C4 | N3 | C2 | 113.1° | 121.1° |
N9 | C1' | O4' | 108.8° | 109.9° |
N9 | C1' | H1' | 109.7° | 109.9° |
N3 | C2 | N2 | 120.1° | 119.1° |
C2 | N2 | H21 | 120.0° | 119.9° |
C2 | N2 | H22 | 120.0° | 120.0° |
O4' | C1' | H1' | 110.4° | 109.9° |
H21 | N2 | H22 | 120.0° | 120.1° |
H2'' | C2' | H2' | 109.5° | 110.5° |
H7'' | C7' | H7' | 109.5° | 110.3° |
H8'' | C8' | H8' | 109.5° | 115.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C8' | C6' | C7' | C5' | 64.8° | 63.3° |
C8' | C6' | C7' | H6' | 154.2° | 155.1° |
C8' | C6' | C5' | H6' | 109.1° | 106.9° |
C6' | C8' | C5' | H8'' | 109.6° | 106.9° |
C6' | C8' | C5' | H8' | 109.5° | 107.4° |
C8' | C6' | C7' | C3' | 56.3° | 40.3° |
C8' | C6' | C5' | O5' | 109.5° | 108.7° |
C8' | C6' | C5' | C4' | 111.5° | 113.3° |
C8' | C6' | C7' | H7'' | 176.0° | 78.6° |
C8' | C6' | C7' | H7' | 63.3° | 159.1° |
C6' | C8' | H8'' | H8' | 144.7° | 145.5° |
C7' | C6' | C5' | H6' | 140.8° | 139.1° |
C6' | C7' | C3' | H7'' | 119.7° | 118.8° |
C6' | C7' | C3' | H7' | 119.7° | 119.0° |
C7' | C6' | C5' | O5' | 140.5° | 137.4° |
C7' | C6' | C5' | C4' | 1.5° | 0.7° |
C6' | C7' | C3' | O3' | 103.5° | 87.8° |
C6' | C7' | C3' | C4' | 15.0° | 36.1° |
C6' | C7' | C3' | C2' | 128.9° | 144.3° |
C6' | C7' | H7'' | H7' | 121.0° | 122.4° |
C7' | C6' | C8' | H8'' | 12.6° | 158.9° |
C7' | C6' | C8' | H8' | 153.6° | 14.1° |
C5' | C6' | C7' | C3' | 8.5° | 23.1° |
C6' | C5' | O5' | C4' | 134.9° | 134.0° |
C6' | C5' | C4' | C3' | 11.1° | 21.7° |
C6' | C5' | C4' | O4' | 107.0° | 88.9° |
C6' | C5' | O5' | HO5' | 180.0° | 179.3° |
C6' | C5' | C4' | H4' | 130.8° | 145.2° |
C5' | C6' | C7' | H7'' | 111.2° | 141.9° |
C5' | C6' | C7' | H7' | 128.1° | 95.8° |
C8' | C5' | O5' | C4' | 154.9° | 153.5° |
C8' | C5' | C4' | C3' | 53.6° | 44.7° |
C8' | C5' | C4' | O4' | 171.7° | 155.3° |
C8' | C5' | O5' | HO5' | 109.8° | 108.2° |
C8' | C5' | C4' | H4' | 66.1° | 78.8° |
C5' | C8' | H8'' | H8' | 144.6° | 146.4° |
C7' | C3' | C4' | C5' | 16.0° | 35.6° |
C7' | C3' | O3' | C4' | 116.2° | 118.0° |
C7' | C3' | O3' | C2' | 128.5° | 125.3° |
C7' | C3' | C4' | C2' | 120.2° | 112.8° |
C7' | C3' | C4' | O4' | 102.9° | 78.7° |
C7' | C3' | C2' | C1' | 94.1° | 90.0° |
C7' | C3' | C4' | H4' | 135.7° | 158.6° |
C7' | C3' | C2' | H2'' | 25.1° | 151.2° |
C7' | C3' | C2' | H2' | 146.7° | 28.7° |
C3' | C7' | H7'' | H7' | 120.9° | 122.2° |
C3' | C7' | C6' | H6' | 149.5° | 164.7° |
C7' | C3' | O3' | H2 | 180.0° | 62.0° |
O5' | C5' | C4' | C3' | 150.7° | 161.5° |
O5' | C5' | C4' | O4' | 32.7° | 50.9° |
O5' | C5' | C4' | H4' | 89.5° | 74.9° |
O5' | C5' | C6' | H6' | 0.4° | 1.8° |
O5' | C5' | C8' | H8'' | 141.5° | 4.7° |
O5' | C5' | C8' | H8' | 0.6° | 141.0° |
C5' | C4' | C3' | O3' | 103.6° | 88.6° |
C5' | C4' | C3' | O4' | 118.8° | 114.3° |
C5' | C4' | C3' | H4' | 119.7° | 123.0° |
C5' | C4' | C3' | C2' | 136.2° | 148.4° |
C5' | C4' | O4' | H4' | 121.4° | 125.8° |
C5' | C4' | O4' | C1' | 124.9° | 148.7° |
C4' | C5' | O5' | HO5' | 45.1° | 45.3° |
C4' | C5' | C6' | H6' | 139.4° | 139.8° |
C4' | C5' | C8' | H8'' | 13.7° | 158.0° |
C4' | C5' | C8' | H8' | 154.6° | 12.3° |
O3' | C3' | C4' | C2' | 120.2° | 123.0° |
O3' | C3' | C4' | O4' | 137.5° | 157.1° |
O3' | C3' | C2' | C1' | 138.8° | 141.8° |
O3' | C3' | C4' | H4' | 16.1° | 34.4° |
O3' | C3' | C2' | H2'' | 102.0° | 23.0° |
O3' | C3' | C2' | H2' | 19.6° | 99.5° |
O3' | C3' | C7' | H7'' | 136.8° | 31.0° |
O3' | C3' | C7' | H7' | 16.2° | 153.2° |
C3' | C4' | O4' | H4' | 120.7° | 123.2° |
C4' | C3' | C2' | C1' | 20.5° | 18.6° |
C3' | C4' | O4' | C1' | 7.0° | 37.8° |
C4' | C3' | C2' | H2'' | 139.8° | 100.2° |
C4' | C3' | C2' | H2' | 98.7° | 137.4° |
C4' | C3' | C7' | H7'' | 104.7° | 155.0° |
C4' | C3' | C7' | H7' | 134.7° | 82.8° |
C4' | C3' | O3' | H2 | 63.8° | 180.0° |
C2' | C3' | C4' | O4' | 17.4° | 34.2° |
C3' | C2' | C1' | H2'' | 119.3° | 118.8° |
C3' | C2' | C1' | H2' | 119.3° | 118.8° |
C3' | C2' | C1' | N9 | 101.9° | 122.5° |
C3' | C2' | C1' | O4' | 17.2° | 3.0° |
C2' | C3' | C4' | H4' | 104.1° | 88.6° |
C3' | C2' | C1' | H1' | 137.2° | 116.5° |
C3' | C2' | H2'' | H2' | 122.2° | 122.4° |
C2' | C3' | C7' | H7'' | 9.2° | 96.8° |
C2' | C3' | C7' | H7' | 111.5° | 25.3° |
C2' | C3' | O3' | H2 | 51.5° | 63.3° |
O6 | C6 | C5 | N7 | 0.2° | 0.5° |
O6 | C6 | C5 | N1 | 180.0° | 179.9° |
O6 | C6 | C5 | C4 | 179.9° | 180.0° |
O6 | C6 | N1 | C2 | 179.8° | 180.0° |
O6 | C6 | N1 | H1 | 0.1° | 0.1° |
C4' | O4' | C1' | C2' | 6.6° | 25.8° |
C4' | O4' | C1' | N9 | 113.8° | 145.5° |
C4' | O4' | C1' | H1' | 125.8° | 93.6° |
N7 | C5 | C6 | C4 | 179.9° | 179.5° |
N7 | C5 | C6 | N1 | 179.8° | 179.5° |
C5 | N7 | C8 | N9 | 0.1° | 0.0° |
N7 | C5 | C4 | N9 | 0.1° | 0.4° |
N7 | C5 | C4 | N3 | 180.0° | 180.0° |
C5 | N7 | C8 | H8 | 179.9° | 179.7° |
C8 | N7 | C5 | C6 | 179.9° | 179.8° |
C8 | N7 | C5 | C4 | 0.0° | 0.2° |
N7 | C8 | N9 | H8 | 180.0° | 179.7° |
N7 | C8 | N9 | C4 | 0.2° | 0.3° |
N7 | C8 | N9 | C1' | 179.5° | 179.8° |
C5 | C6 | N1 | C2 | 0.2° | 0.1° |
C6 | C5 | C4 | N9 | 179.9° | 180.0° |
C6 | C5 | C4 | N3 | 0.1° | 0.3° |
C5 | C6 | N1 | H1 | 179.8° | 180.0° |
N1 | C6 | C5 | C4 | 0.1° | 0.0° |
C6 | N1 | C2 | H1 | 180.0° | 179.9° |
C6 | N1 | C2 | N3 | 0.0° | 0.3° |
C6 | N1 | C2 | N2 | 180.0° | 179.7° |
C2' | C1' | N9 | C8 | 117.4° | 94.4° |
C2' | C1' | N9 | C4 | 62.1° | 85.5° |
C2' | C1' | N9 | O4' | 118.5° | 118.0° |
C2' | C1' | N9 | H1' | 120.6° | 121.0° |
C2' | C1' | O4' | H1' | 119.2° | 119.4° |
C1' | C2' | H2'' | H2' | 122.2° | 122.4° |
C5 | C4 | N9 | C8 | 0.1° | 0.4° |
C5 | C4 | N9 | N3 | 180.0° | 179.6° |
C5 | C4 | N9 | C1' | 179.5° | 179.7° |
C5 | C4 | N3 | C2 | 0.3° | 0.7° |
C8 | N9 | C4 | C1' | 179.6° | 180.0° |
C8 | N9 | C4 | N3 | 179.9° | 180.0° |
C8 | N9 | C1' | O4' | 1.0° | 23.6° |
C8 | N9 | C1' | H1' | 122.0° | 144.6° |
N1 | C2 | N3 | C4 | 0.3° | 0.7° |
N1 | C2 | N3 | N2 | 180.0° | 179.4° |
N1 | C2 | N2 | H21 | 180.0° | 179.4° |
N1 | C2 | N2 | H22 | 0.0° | 0.6° |
N9 | C4 | N3 | C2 | 179.6° | 179.8° |
C4 | N9 | C1' | O4' | 179.4° | 156.5° |
C4 | N9 | C8 | H8 | 179.9° | 180.0° |
C4 | N9 | C1' | H1' | 58.5° | 35.5° |
N3 | C4 | N9 | C1' | 0.5° | 0.1° |
C4 | N3 | C2 | N2 | 179.7° | 179.9° |
N9 | C1' | O4' | H1' | 120.4° | 121.0° |
C1' | N9 | C8 | H8 | 0.5° | 0.0° |
N9 | C1' | C2' | H2'' | 17.4° | 118.7° |
N9 | C1' | C2' | H2' | 138.9° | 3.7° |
N3 | C2 | N1 | H1 | 179.9° | 179.6° |
N3 | C2 | N2 | H21 | 0.0° | 0.0° |
N3 | C2 | N2 | H22 | 180.0° | 180.0° |
N2 | C2 | N1 | H1 | 0.1° | 0.3° |
C2 | N2 | H21 | H22 | 180.0° | 180.0° |
C1' | O4' | C4' | H4' | 113.7° | 85.4° |
O4' | C1' | C2' | H2'' | 136.5° | 121.8° |
O4' | C1' | C2' | H2' | 102.1° | 115.8° |
H1' | C1' | C2' | H2'' | 103.5° | 2.3° |
H1' | C1' | C2' | H2' | 18.0° | 124.8° |
H7'' | C7' | C6' | H6' | 29.8° | 76.5° |
H7' | C7' | C6' | H6' | 90.9° | 45.8° |
H6' | C6' | C8' | H8'' | 141.5° | 4.3° |
H6' | C6' | C8' | H8' | 0.5° | 140.5° |