F74
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O3' | C3' | sing | 1.43Å | 1.43Å | |
OP1 | P | doub | 1.48Å | 1.51Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C5' | O5' | sing | 1.43Å | 1.42Å | |
C4' | C3' | sing | 1.55Å | 1.51Å | |
C4' | O4' | sing | 1.44Å | 1.43Å | |
C3' | C2' | sing | 1.54Å | 1.52Å | |
O5' | P | sing | 1.61Å | 1.60Å | |
P | OP2 | sing | 1.61Å | 1.51Å | |
O4' | C1' | sing | 1.44Å | 1.43Å | |
C2' | C1' | sing | 1.54Å | 1.52Å | |
C1' | N9 | sing | 1.46Å | 1.49Å | |
CL | C8 | sing | 1.74Å | 1.73Å | |
N9 | C8 | sing | 1.36Å | 1.34Å | Aromatic |
N9 | C4 | sing | 1.36Å | 1.33Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.35Å | Aromatic |
C4 | N3 | sing | 1.37Å | 1.35Å | |
C4 | C5 | doub | 1.39Å | 1.48Å | Aromatic |
N3 | C2 | sing | 1.36Å | 1.35Å | |
N7 | C5 | sing | 1.35Å | 1.35Å | Aromatic |
N2 | C2 | sing | 1.37Å | 1.35Å | |
C2 | N1 | doub | 1.31Å | 1.35Å | |
C5 | C6 | sing | 1.47Å | 1.48Å | |
N1 | C6 | sing | 1.34Å | 1.34Å | |
C6 | O6 | doub | 1.22Å | 1.25Å | |
OP2 | H2 | sing | 0.97Å | 0.95Å | |
C5' | H3 | sing | 1.09Å | 1.10Å | |
C5' | H4 | sing | 1.09Å | 1.10Å | |
C4' | H5 | sing | 1.09Å | 1.10Å | |
C3' | H6 | sing | 1.09Å | 1.10Å | |
C2' | H7 | sing | 1.09Å | 1.10Å | |
C2' | H8 | sing | 1.09Å | 1.10Å | |
C1' | H9 | sing | 1.09Å | 1.10Å | |
N3 | H10 | sing | 0.97Å | 1.00Å | |
N2 | H11 | sing | 0.97Å | 1.00Å | |
N2 | H12 | sing | 0.97Å | 1.00Å | |
O3' | H13 | sing | 0.97Å | 0.95Å | |
P | OP3 | sing | 1.61Å | 1.61Å | |
OP3 | H1 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O3' | C3' | C4' | 104.5° | 110.5° |
O3' | C3' | C2' | 112.4° | 110.5° |
O3' | C3' | H6 | 112.3° | 110.6° |
C3' | O3' | H13 | 109.5° | 114.1° |
OP1 | P | O5' | 108.5° | 109.4° |
OP1 | P | OP2 | 120.7° | 109.4° |
OP1 | P | OP3 | 108.7° | 109.5° |
C4' | C5' | O5' | 110.5° | 109.5° |
C5' | C4' | C3' | 107.8° | 110.4° |
C5' | C4' | O4' | 111.0° | 110.4° |
C4' | C5' | H3 | 109.2° | 109.4° |
C4' | C5' | H4 | 109.2° | 109.5° |
C5' | C4' | H5 | 110.0° | 110.3° |
C5' | O5' | P | 113.3° | 123.0° |
O5' | C5' | H3 | 109.2° | 109.4° |
O5' | C5' | H4 | 109.2° | 109.5° |
C3' | C4' | O4' | 106.6° | 104.8° |
C4' | C3' | C2' | 105.3° | 104.0° |
C3' | C4' | H5 | 110.1° | 110.4° |
C4' | C3' | H6 | 111.1° | 110.5° |
C4' | O4' | C1' | 111.2° | 105.3° |
O4' | C4' | H5 | 111.2° | 110.5° |
C3' | C2' | C1' | 102.6° | 104.1° |
C2' | C3' | H6 | 110.8° | 110.5° |
C3' | C2' | H7 | 111.1° | 110.5° |
C3' | C2' | H8 | 111.2° | 110.5° |
O5' | P | OP2 | 105.3° | 109.5° |
O5' | P | OP3 | 102.2° | 109.4° |
P | OP2 | H2 | 109.5° | 114.0° |
OP2 | P | OP3 | 109.9° | 109.5° |
O4' | C1' | C2' | 106.4° | 104.8° |
O4' | C1' | N9 | 105.5° | 110.4° |
O4' | C1' | H9 | 109.6° | 110.4° |
C2' | C1' | N9 | 118.2° | 110.4° |
C1' | C2' | H7 | 111.2° | 110.5° |
C1' | C2' | H8 | 111.1° | 110.6° |
C2' | C1' | H9 | 108.3° | 110.3° |
C1' | N9 | C8 | 132.0° | 126.2° |
C1' | N9 | C4 | 123.2° | 126.3° |
N9 | C1' | H9 | 108.7° | 110.3° |
CL | C8 | N9 | 123.7° | 125.2° |
CL | C8 | N7 | 119.7° | 125.2° |
C8 | N9 | C4 | 104.5° | 107.5° |
N9 | C8 | N7 | 116.6° | 109.5° |
N9 | C4 | N3 | 133.2° | 134.7° |
N9 | C4 | C5 | 107.6° | 106.4° |
C8 | N7 | C5 | 103.6° | 109.1° |
N3 | C4 | C5 | 119.1° | 118.9° |
C4 | N3 | C2 | 120.8° | 120.5° |
C4 | N3 | H10 | 119.6° | 119.7° |
C4 | C5 | N7 | 107.6° | 107.4° |
C4 | C5 | C6 | 116.8° | 118.1° |
N3 | C2 | N2 | 118.3° | 118.7° |
N3 | C2 | N1 | 122.5° | 122.5° |
C2 | N3 | H10 | 119.6° | 119.8° |
N7 | C5 | C6 | 135.6° | 134.5° |
N2 | C2 | N1 | 119.2° | 118.8° |
C2 | N2 | H11 | 120.0° | 120.0° |
C2 | N2 | H12 | 120.0° | 120.0° |
C2 | N1 | C6 | 123.0° | 121.4° |
C5 | C6 | N1 | 117.7° | 118.6° |
C5 | C6 | O6 | 121.0° | 120.7° |
N1 | C6 | O6 | 121.3° | 120.8° |
H3 | C5' | H4 | 109.5° | 109.5° |
H7 | C2' | H8 | 109.5° | 110.5° |
H11 | N2 | H12 | 120.0° | 120.0° |
P | OP3 | H1 | 109.5° | 113.9° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O3' | C3' | C4' | C5' | 141.1° | 98.6° |
O3' | C3' | C4' | C2' | 118.6° | 118.6° |
O3' | C3' | C4' | H6 | 121.3° | 122.7° |
O3' | C3' | C4' | O4' | 99.7° | 142.6° |
O3' | C3' | C2' | H6 | 126.6° | 122.7° |
O3' | C3' | C2' | C1' | 86.0° | 118.7° |
O3' | C3' | C4' | H5 | 21.1° | 23.7° |
O3' | C3' | C2' | H7 | 155.1° | 122.7° |
O3' | C3' | C2' | H8 | 32.9° | 0.1° |
OP1 | P | O5' | C5' | 138.4° | 55.0° |
OP1 | P | O5' | OP2 | 130.5° | 120.0° |
OP1 | P | O5' | OP3 | 114.6° | 120.0° |
OP1 | P | OP2 | OP3 | 127.6° | 120.1° |
OP1 | P | OP2 | H2 | 0.0° | 179.9° |
OP1 | P | OP3 | H1 | 0.0° | 60.0° |
C4' | C5' | O5' | H3 | 120.2° | 120.0° |
C4' | C5' | O5' | H4 | 120.1° | 120.0° |
C5' | C4' | C3' | O4' | 119.2° | 118.8° |
C5' | C4' | C3' | H5 | 120.0° | 122.2° |
C5' | C4' | O4' | H5 | 122.8° | 122.3° |
C5' | C4' | C3' | C2' | 100.3° | 142.8° |
C4' | C5' | O5' | P | 172.7° | 180.0° |
C5' | C4' | O4' | C1' | 114.9° | 159.3° |
C4' | C5' | H3 | H4 | 119.5° | 120.0° |
C5' | C4' | C3' | H6 | 19.8° | 24.2° |
O5' | C5' | C4' | C3' | 160.5° | 175.1° |
O5' | C5' | C4' | O4' | 44.1° | 69.6° |
C5' | O5' | P | OP2 | 91.1° | 65.0° |
O5' | C5' | H3 | H4 | 119.5° | 120.0° |
O5' | C5' | C4' | H5 | 79.4° | 52.8° |
C5' | O5' | P | OP3 | 23.8° | 175.0° |
C3' | C4' | O4' | H5 | 120.0° | 118.9° |
C4' | C3' | C2' | H6 | 120.2° | 118.7° |
C3' | C4' | O4' | C1' | 2.3° | 40.5° |
C4' | C3' | C2' | C1' | 27.2° | 0.1° |
C3' | C4' | C5' | H3 | 79.3° | 65.0° |
C3' | C4' | C5' | H4 | 40.4° | 55.0° |
C4' | C3' | C2' | H7 | 91.7° | 118.7° |
C4' | C3' | C2' | H8 | 146.1° | 118.6° |
C4' | C3' | O3' | H13 | 180.0° | 180.0° |
O4' | C4' | C3' | C2' | 19.0° | 24.0° |
C4' | O4' | C1' | C2' | 15.4° | 40.5° |
C4' | O4' | C1' | N9 | 141.7° | 159.4° |
O4' | C4' | C5' | H3 | 164.3° | 50.3° |
O4' | C4' | C5' | H4 | 76.0° | 170.3° |
O4' | C4' | C3' | H6 | 139.0° | 94.6° |
C4' | O4' | C1' | H9 | 101.4° | 78.3° |
C3' | C2' | C1' | O4' | 26.1° | 23.9° |
C3' | C2' | C1' | H7 | 118.9° | 118.6° |
C3' | C2' | C1' | H8 | 118.9° | 118.7° |
C3' | C2' | C1' | N9 | 144.3° | 142.8° |
C2' | C3' | C4' | H5 | 139.7° | 94.9° |
C3' | C2' | H7 | H8 | 123.2° | 122.6° |
C3' | C2' | C1' | H9 | 91.6° | 95.0° |
C2' | C3' | O3' | H13 | 66.3° | 65.4° |
O5' | P | OP2 | OP3 | 109.4° | 120.0° |
O5' | P | OP2 | H2 | 123.0° | 60.0° |
P | O5' | C5' | H3 | 67.1° | 60.0° |
P | O5' | C5' | H4 | 52.6° | 60.0° |
O5' | P | OP3 | H1 | 114.5° | 180.0° |
OP2 | P | OP3 | H1 | 134.0° | 60.0° |
O4' | C1' | C2' | N9 | 118.2° | 118.9° |
O4' | C1' | C2' | H9 | 117.7° | 118.9° |
O4' | C1' | N9 | H9 | 117.4° | 122.4° |
O4' | C1' | N9 | C8 | 66.8° | 40.5° |
O4' | C1' | N9 | C4 | 106.9° | 139.6° |
C1' | O4' | C4' | H5 | 122.3° | 78.4° |
O4' | C1' | C2' | H7 | 92.8° | 94.7° |
O4' | C1' | C2' | H8 | 145.0° | 142.6° |
C2' | C1' | N9 | H9 | 123.9° | 122.2° |
C2' | C1' | N9 | C8 | 51.9° | 75.0° |
C2' | C1' | N9 | C4 | 134.4° | 105.0° |
C1' | C2' | C3' | H6 | 147.4° | 118.6° |
C1' | C2' | H7 | H8 | 123.2° | 122.7° |
C1' | N9 | C8 | CL | 4.6° | 0.1° |
C1' | N9 | C8 | C4 | 174.6° | 179.9° |
C1' | N9 | C8 | N7 | 177.0° | 180.0° |
C1' | N9 | C4 | N3 | 4.7° | 0.0° |
C1' | N9 | C4 | C5 | 177.3° | 180.0° |
N9 | C1' | C2' | H7 | 25.4° | 24.2° |
N9 | C1' | C2' | H8 | 96.8° | 98.5° |
CL | C8 | N9 | N7 | 178.4° | 179.9° |
CL | C8 | N9 | C4 | 179.2° | 179.9° |
CL | C8 | N7 | C5 | 179.9° | 179.9° |
C8 | N9 | C4 | N3 | 179.9° | 180.0° |
C8 | N9 | C4 | C5 | 2.1° | 0.1° |
N9 | C8 | N7 | C5 | 1.6° | 0.0° |
C8 | N9 | C1' | H9 | 175.7° | 162.8° |
C4 | N9 | C8 | N7 | 2.4° | 0.0° |
N9 | C4 | N3 | C5 | 177.9° | 179.9° |
N9 | C4 | N3 | C2 | 178.6° | 180.0° |
N9 | C4 | C5 | N7 | 1.3° | 0.1° |
N9 | C4 | C5 | C6 | 178.9° | 180.0° |
C4 | N9 | C1' | H9 | 10.5° | 17.2° |
N9 | C4 | N3 | H10 | 1.5° | 0.0° |
C8 | N7 | C5 | C4 | 0.1° | 0.1° |
C8 | N7 | C5 | C6 | 179.7° | 179.9° |
C4 | N3 | C2 | H10 | 180.0° | 179.9° |
N3 | C4 | C5 | N7 | 179.7° | 180.0° |
C4 | N3 | C2 | N2 | 179.8° | 179.8° |
C4 | N3 | C2 | N1 | 0.6° | 0.3° |
N3 | C4 | C5 | C6 | 0.5° | 0.1° |
C5 | C4 | N3 | C2 | 0.7° | 0.0° |
C4 | C5 | N7 | C6 | 179.8° | 179.9° |
C4 | C5 | C6 | N1 | 0.3° | 0.2° |
C4 | C5 | C6 | O6 | 179.6° | 179.9° |
C5 | C4 | N3 | H10 | 179.4° | 179.9° |
N3 | C2 | N2 | N1 | 179.6° | 179.5° |
N3 | C2 | N1 | C6 | 0.3° | 0.6° |
N3 | C2 | N2 | H11 | 179.6° | 179.4° |
N3 | C2 | N2 | H12 | 0.4° | 0.5° |
N7 | C5 | C6 | N1 | 180.0° | 179.6° |
N7 | C5 | C6 | O6 | 0.2° | 0.1° |
N2 | C2 | N1 | C6 | 179.9° | 179.9° |
N2 | C2 | N3 | H10 | 0.2° | 0.3° |
C2 | N2 | H11 | H12 | 180.0° | 179.9° |
C2 | N1 | C6 | C5 | 0.2° | 0.6° |
C2 | N1 | C6 | O6 | 179.7° | 179.7° |
N1 | C2 | N3 | H10 | 179.4° | 179.7° |
N1 | C2 | N2 | H11 | 0.0° | 0.0° |
N1 | C2 | N2 | H12 | 180.0° | 179.9° |
C5 | C6 | N1 | O6 | 179.9° | 179.7° |
H2 | OP2 | P | OP3 | 127.7° | 60.0° |
H3 | C5' | C4' | H5 | 40.8° | 172.7° |
H4 | C5' | C4' | H5 | 160.5° | 67.3° |
H5 | C4' | C3' | H6 | 100.2° | 146.4° |
H6 | C3' | C2' | H7 | 28.5° | 0.0° |
H6 | C3' | C2' | H8 | 93.7° | 122.7° |
H6 | C3' | O3' | H13 | 59.5° | 57.3° |
H7 | C2' | C1' | H9 | 149.5° | 146.4° |
H8 | C2' | C1' | H9 | 27.4° | 23.7° |