F73
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP2 | P | sing | 1.61Å | 1.62Å | |
P | OP1 | doub | 1.48Å | 1.50Å | |
P | O3' | sing | 1.61Å | 1.64Å | |
O3' | C3' | sing | 1.43Å | 1.44Å | |
C3A | C3' | sing | 1.53Å | 1.55Å | |
C3' | C2' | sing | 1.53Å | 1.55Å | |
N2' | C2' | sing | 1.46Å | 1.45Å | |
N2' | C2A | sing | 1.35Å | 1.37Å | |
C2' | C1' | sing | 1.53Å | 1.52Å | |
C2B | C2A | sing | 1.51Å | 1.55Å | |
C2B | N9 | sing | 1.47Å | 1.52Å | |
C1' | O1' | sing | 1.43Å | 1.45Å | |
C8 | N9 | sing | 1.36Å | 1.33Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.34Å | Aromatic |
C2A | O2A | doub | 1.21Å | 1.25Å | |
N9 | C4 | sing | 1.37Å | 1.35Å | Aromatic |
N7 | C5 | sing | 1.36Å | 1.34Å | Aromatic |
C4 | C5 | doub | 1.40Å | 1.34Å | Aromatic |
C4 | N3 | sing | 1.34Å | 1.33Å | |
C5 | C6 | sing | 1.41Å | 1.33Å | |
N3 | C2 | doub | 1.31Å | 1.36Å | |
C6 | O6 | doub | 1.22Å | 1.22Å | |
C6 | N1 | sing | 1.35Å | 1.38Å | |
C2 | N1 | sing | 1.36Å | 1.39Å | |
C2 | N2 | sing | 1.37Å | 1.32Å | |
C3' | H1 | sing | 1.09Å | 1.10Å | |
C2' | H2 | sing | 1.09Å | 1.10Å | |
C1' | H3 | sing | 1.09Å | 1.10Å | |
C1' | H4 | sing | 1.09Å | 1.10Å | |
C8 | H5 | sing | 1.08Å | 1.08Å | |
N1 | H6 | sing | 0.97Å | 1.00Å | |
N2 | H7 | sing | 0.97Å | 1.00Å | |
N2 | H8 | sing | 0.97Å | 1.00Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
C3A | H11 | sing | 1.09Å | 1.10Å | |
C3A | H12 | sing | 1.09Å | 1.10Å | |
C3A | H13 | sing | 1.09Å | 1.10Å | |
O1' | H14 | sing | 0.97Å | 0.95Å | |
N2' | H15 | sing | 0.97Å | 1.00Å | |
C2B | H16 | sing | 1.09Å | 1.10Å | |
C2B | H17 | sing | 1.09Å | 1.10Å | |
P | OP3 | sing | 1.61Å | 1.50Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP2 | P | OP1 | 118.3° | 109.5° |
OP2 | P | O3' | 108.6° | 109.4° |
P | OP2 | HOP2 | 109.5° | 114.0° |
OP2 | P | OP3 | 90.3° | 109.4° |
OP1 | P | O3' | 114.7° | 109.5° |
OP1 | P | OP3 | 121.3° | 109.5° |
P | O3' | C3' | 121.0° | 123.0° |
O3' | P | OP3 | 99.9° | 109.5° |
O3' | C3' | C3A | 110.4° | 109.5° |
O3' | C3' | C2' | 107.2° | 109.4° |
O3' | C3' | H1 | 109.5° | 109.4° |
C3A | C3' | C2' | 113.6° | 109.5° |
C3A | C3' | H1 | 108.0° | 109.5° |
C3' | C3A | H11 | 109.5° | 109.5° |
C3' | C3A | H12 | 109.5° | 109.5° |
C3' | C3A | H13 | 109.5° | 109.5° |
C3' | C2' | N2' | 109.1° | 109.5° |
C3' | C2' | C1' | 106.8° | 109.5° |
C2' | C3' | H1 | 108.0° | 109.5° |
C3' | C2' | H2 | 109.8° | 109.4° |
C2' | N2' | C2A | 123.9° | 120.0° |
N2' | C2' | C1' | 109.4° | 109.5° |
N2' | C2' | H2 | 111.3° | 109.5° |
C2' | N2' | H15 | 118.0° | 120.0° |
N2' | C2A | C2B | 112.5° | 120.0° |
N2' | C2A | O2A | 124.9° | 120.0° |
C2A | N2' | H15 | 118.1° | 120.0° |
C2' | C1' | O1' | 108.0° | 109.4° |
C1' | C2' | H2 | 110.3° | 109.5° |
C2' | C1' | H3 | 109.8° | 109.4° |
C2' | C1' | H4 | 109.8° | 109.5° |
C2A | C2B | N9 | 113.1° | 109.5° |
C2B | C2A | O2A | 122.6° | 120.0° |
C2A | C2B | H16 | 108.5° | 109.5° |
C2A | C2B | H17 | 108.6° | 109.4° |
C2B | N9 | C8 | 131.5° | 126.3° |
C2B | N9 | C4 | 121.2° | 126.2° |
N9 | C2B | H16 | 108.6° | 109.5° |
N9 | C2B | H17 | 108.5° | 109.5° |
O1' | C1' | H3 | 109.8° | 109.5° |
O1' | C1' | H4 | 109.8° | 109.4° |
C1' | O1' | H14 | 109.5° | 114.0° |
N9 | C8 | N7 | 109.1° | 109.8° |
C8 | N9 | C4 | 107.3° | 107.5° |
N9 | C8 | H5 | 125.5° | 125.1° |
C8 | N7 | C5 | 107.4° | 109.3° |
N7 | C8 | H5 | 125.4° | 125.1° |
N9 | C4 | C5 | 107.9° | 106.1° |
N9 | C4 | N3 | 130.4° | 134.2° |
N7 | C5 | C4 | 108.3° | 107.3° |
N7 | C5 | C6 | 130.6° | 134.1° |
C5 | C4 | N3 | 121.8° | 119.7° |
C4 | C5 | C6 | 121.1° | 118.6° |
C4 | N3 | C2 | 119.1° | 121.1° |
C5 | C6 | O6 | 121.4° | 120.8° |
C5 | C6 | N1 | 119.5° | 118.3° |
N3 | C2 | N1 | 120.0° | 121.9° |
N3 | C2 | N2 | 122.1° | 119.0° |
O6 | C6 | N1 | 119.1° | 120.8° |
C6 | N1 | C2 | 118.6° | 120.4° |
C6 | N1 | H6 | 120.7° | 119.9° |
N1 | C2 | N2 | 117.8° | 119.1° |
C2 | N1 | H6 | 120.7° | 119.8° |
C2 | N2 | H7 | 120.0° | 120.0° |
C2 | N2 | H8 | 120.0° | 120.0° |
H3 | C1' | H4 | 109.5° | 109.5° |
H7 | N2 | H8 | 120.0° | 120.0° |
H11 | C3A | H12 | 109.4° | 109.4° |
H11 | C3A | H13 | 109.5° | 109.5° |
H12 | C3A | H13 | 109.5° | 109.4° |
H16 | C2B | H17 | 109.5° | 109.5° |
P | OP3 | HOP3 | 109.5° | 114.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP2 | P | OP1 | O3' | 130.3° | 120.0° |
OP2 | P | OP1 | OP3 | 109.6° | 120.0° |
OP2 | P | O3' | OP3 | 93.8° | 120.0° |
OP2 | P | O3' | C3' | 158.0° | 63.7° |
OP2 | P | OP3 | HOP3 | 123.9° | 60.0° |
OP1 | P | O3' | OP3 | 131.4° | 120.0° |
OP1 | P | O3' | C3' | 23.1° | 56.3° |
OP1 | P | OP2 | HOP2 | 0.0° | 176.8° |
OP1 | P | OP3 | HOP3 | 0.0° | 60.0° |
P | O3' | C3' | C3A | 76.4° | 109.4° |
P | O3' | C3' | C2' | 159.3° | 130.6° |
P | O3' | C3' | H1 | 42.4° | 10.6° |
O3' | P | OP2 | HOP2 | 133.0° | 56.8° |
O3' | P | OP3 | HOP3 | 127.1° | 180.0° |
O3' | C3' | C3A | C2' | 120.5° | 120.0° |
O3' | C3' | C3A | H1 | 119.7° | 120.0° |
O3' | C3' | C2' | H1 | 117.9° | 120.0° |
O3' | C3' | C2' | N2' | 55.8° | 60.9° |
O3' | C3' | C2' | C1' | 62.4° | 59.1° |
O3' | C3' | C2' | H2 | 178.0° | 179.1° |
O3' | C3' | C3A | H11 | 180.0° | 60.0° |
O3' | C3' | C3A | H12 | 60.0° | 180.0° |
O3' | C3' | C3A | H13 | 60.0° | 60.0° |
C3' | O3' | P | OP3 | 108.2° | 176.3° |
C3A | C3' | C2' | H1 | 119.8° | 120.1° |
C3A | C3' | C2' | N2' | 66.5° | 59.1° |
C3A | C3' | C2' | C1' | 175.3° | 179.1° |
C3A | C3' | C2' | H2 | 55.7° | 60.9° |
C3' | C3A | H11 | H12 | 120.0° | 120.0° |
C3' | C3A | H11 | H13 | 120.0° | 120.1° |
C3' | C3A | H12 | H13 | 120.0° | 120.0° |
C3' | C2' | N2' | C1' | 116.5° | 120.0° |
C3' | C2' | N2' | H2 | 121.3° | 120.0° |
C3' | C2' | N2' | C2A | 112.0° | 155.0° |
C3' | C2' | C1' | H2 | 119.3° | 119.9° |
C3' | C2' | C1' | O1' | 96.0° | 57.3° |
C3' | C2' | C1' | H3 | 23.7° | 177.2° |
C3' | C2' | C1' | H4 | 144.2° | 62.7° |
C2' | C3' | C3A | H11 | 59.5° | 180.0° |
C2' | C3' | C3A | H12 | 60.5° | 60.0° |
C2' | C3' | C3A | H13 | 179.5° | 59.9° |
C3' | C2' | N2' | H15 | 68.0° | 25.0° |
C2' | N2' | C2A | H15 | 180.0° | 180.0° |
N2' | C2' | C1' | H2 | 122.7° | 120.0° |
C2' | N2' | C2A | C2B | 174.0° | 180.0° |
N2' | C2' | C1' | O1' | 146.0° | 62.8° |
C2' | N2' | C2A | O2A | 4.7° | 0.0° |
N2' | C2' | C3' | H1 | 173.7° | 179.1° |
N2' | C2' | C1' | H3 | 94.2° | 57.2° |
N2' | C2' | C1' | H4 | 26.3° | 177.3° |
C2A | N2' | C2' | C1' | 131.4° | 85.0° |
N2' | C2A | C2B | O2A | 178.7° | 180.0° |
N2' | C2A | C2B | N9 | 171.5° | 180.0° |
C2A | N2' | C2' | H2 | 9.3° | 35.0° |
N2' | C2A | C2B | H16 | 68.0° | 60.0° |
N2' | C2A | C2B | H17 | 51.0° | 60.0° |
C2' | C1' | O1' | H3 | 119.8° | 120.0° |
C2' | C1' | O1' | H4 | 119.8° | 120.0° |
C1' | C2' | C3' | H1 | 55.5° | 60.9° |
C2' | C1' | H3 | H4 | 120.7° | 120.0° |
C2' | C1' | O1' | H14 | 180.0° | 175.7° |
C1' | C2' | N2' | H15 | 48.6° | 95.0° |
C2A | C2B | N9 | H16 | 120.5° | 120.0° |
C2A | C2B | N9 | H17 | 120.5° | 120.0° |
C2A | C2B | N9 | C8 | 86.6° | 94.7° |
C2A | C2B | N9 | C4 | 92.2° | 85.0° |
C2B | C2A | N2' | H15 | 6.0° | 0.0° |
C2A | C2B | H16 | H17 | 118.4° | 120.0° |
C2B | N9 | C8 | C4 | 178.9° | 179.7° |
C2B | N9 | C8 | N7 | 179.0° | 179.8° |
N9 | C2B | C2A | O2A | 7.2° | 0.0° |
C2B | N9 | C4 | C5 | 179.5° | 179.8° |
C2B | N9 | C4 | N3 | 0.1° | 0.3° |
C2B | N9 | C8 | H5 | 1.0° | 0.3° |
N9 | C2B | H16 | H17 | 118.3° | 120.0° |
O1' | C1' | C2' | H2 | 23.3° | 177.2° |
O1' | C1' | H3 | H4 | 120.7° | 120.0° |
N9 | C8 | N7 | H5 | 180.0° | 180.0° |
N9 | C8 | N7 | C5 | 0.3° | 0.0° |
C8 | N9 | C4 | C5 | 0.4° | 0.0° |
C8 | N9 | C4 | N3 | 179.2° | 180.0° |
C8 | N9 | C2B | H16 | 152.9° | 25.3° |
C8 | N9 | C2B | H17 | 33.9° | 145.3° |
N7 | C8 | N9 | C4 | 0.1° | 0.1° |
C8 | N7 | C5 | C4 | 0.5° | 0.0° |
C8 | N7 | C5 | C6 | 179.8° | 180.0° |
O2A | C2A | N2' | H15 | 175.3° | 180.0° |
O2A | C2A | C2B | H16 | 113.3° | 119.9° |
O2A | C2A | C2B | H17 | 127.8° | 120.0° |
N9 | C4 | C5 | N7 | 0.6° | 0.0° |
N9 | C4 | C5 | N3 | 179.6° | 180.0° |
N9 | C4 | C5 | C6 | 179.7° | 180.0° |
N9 | C4 | N3 | C2 | 179.2° | 179.9° |
C4 | N9 | C8 | H5 | 179.9° | 180.0° |
C4 | N9 | C2B | H16 | 28.3° | 155.1° |
C4 | N9 | C2B | H17 | 147.2° | 35.0° |
N7 | C5 | C4 | C6 | 179.7° | 180.0° |
N7 | C5 | C4 | N3 | 179.1° | 180.0° |
N7 | C5 | C6 | O6 | 0.5° | 0.1° |
N7 | C5 | C6 | N1 | 179.8° | 180.0° |
C5 | N7 | C8 | H5 | 179.7° | 180.0° |
C5 | C4 | N3 | C2 | 1.2° | 0.0° |
C4 | C5 | C6 | O6 | 179.8° | 179.9° |
C4 | C5 | C6 | N1 | 0.1° | 0.0° |
N3 | C4 | C5 | C6 | 0.7° | 0.0° |
C4 | N3 | C2 | N1 | 1.0° | 0.0° |
C4 | N3 | C2 | N2 | 179.4° | 180.0° |
C5 | C6 | O6 | N1 | 179.7° | 180.0° |
C5 | C6 | N1 | C2 | 0.3° | 0.0° |
C5 | C6 | N1 | H6 | 179.7° | 179.9° |
N3 | C2 | N1 | C6 | 0.3° | 0.0° |
N3 | C2 | N1 | N2 | 179.6° | 180.0° |
N3 | C2 | N1 | H6 | 179.8° | 179.9° |
N3 | C2 | N2 | H7 | 0.0° | 180.0° |
N3 | C2 | N2 | H8 | 180.0° | 0.1° |
O6 | C6 | N1 | C2 | 180.0° | 180.0° |
O6 | C6 | N1 | H6 | 0.0° | 0.0° |
C6 | N1 | C2 | H6 | 180.0° | 179.9° |
C6 | N1 | C2 | N2 | 179.8° | 180.0° |
N1 | C2 | N2 | H7 | 179.6° | 0.0° |
N1 | C2 | N2 | H8 | 0.4° | 180.0° |
N2 | C2 | N1 | H6 | 0.2° | 0.1° |
C2 | N2 | H7 | H8 | 180.0° | 180.0° |
H1 | C3' | C2' | H2 | 64.1° | 59.1° |
H1 | C3' | C3A | H11 | 60.3° | 60.0° |
H1 | C3' | C3A | H12 | 179.7° | 60.0° |
H1 | C3' | C3A | H13 | 59.7° | 180.0° |
H2 | C2' | C1' | H3 | 143.1° | 62.8° |
H2 | C2' | C1' | H4 | 96.5° | 57.2° |
H2 | C2' | N2' | H15 | 170.7° | 145.0° |
H3 | C1' | O1' | H14 | 60.2° | 64.3° |
H4 | C1' | O1' | H14 | 60.2° | 55.7° |
HOP2 | OP2 | P | OP3 | 126.4° | 63.2° |
H11 | C3A | H12 | H13 | 120.0° | 119.9° |