F6X
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP2 | P | sing | 1.61Å | 1.64Å | |
OP1 | P | doub | 1.48Å | 1.63Å | |
P | O3' | sing | 1.61Å | 1.57Å | |
C3A | C3' | sing | 1.53Å | 1.54Å | |
O3' | C3' | sing | 1.43Å | 1.41Å | |
C5 | C6 | doub | 1.35Å | 1.38Å | |
C5 | C4 | sing | 1.41Å | 1.39Å | |
C6 | N1 | sing | 1.36Å | 1.40Å | |
C3' | C2' | sing | 1.53Å | 1.52Å | |
C2B | N1 | sing | 1.47Å | 1.47Å | |
C2B | C2A | sing | 1.51Å | 1.51Å | |
N2' | C2' | sing | 1.46Å | 1.47Å | |
N2' | C2A | sing | 1.35Å | 1.33Å | |
N1 | C2 | sing | 1.35Å | 1.34Å | |
C4 | N4 | sing | 1.38Å | 1.32Å | |
C4 | N3 | doub | 1.33Å | 1.41Å | |
C2' | C1' | sing | 1.53Å | 1.52Å | |
C2A | O2A | doub | 1.21Å | 1.23Å | |
C2 | N3 | sing | 1.33Å | 1.38Å | |
C2 | O2 | doub | 1.22Å | 1.23Å | |
C1' | O1' | sing | 1.43Å | 1.44Å | |
C1' | H1 | sing | 1.09Å | 1.10Å | |
C1' | H2 | sing | 1.09Å | 1.10Å | |
C6 | H3 | sing | 1.08Å | 1.08Å | |
C5 | H4 | sing | 1.08Å | 1.08Å | |
N4 | H5 | sing | 0.97Å | 1.00Å | |
N4 | H6 | sing | 0.97Å | 1.00Å | |
C2' | H7 | sing | 1.09Å | 1.10Å | |
C3' | H8 | sing | 1.09Å | 1.10Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
C3A | H11 | sing | 1.09Å | 1.10Å | |
C3A | H12 | sing | 1.09Å | 1.10Å | |
C3A | H13 | sing | 1.09Å | 1.10Å | |
O1' | H14 | sing | 0.97Å | 0.95Å | |
N2' | H15 | sing | 0.97Å | 1.00Å | |
C2B | H16 | sing | 1.09Å | 1.10Å | |
C2B | H17 | sing | 1.09Å | 1.10Å | |
P | OP3 | sing | 1.61Å | 1.48Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP2 | P | OP1 | 119.8° | 109.5° |
OP2 | P | O3' | 120.9° | 109.4° |
P | OP2 | HOP2 | 109.5° | 114.0° |
OP2 | P | OP3 | 97.8° | 109.5° |
OP1 | P | O3' | 117.5° | 109.5° |
OP1 | P | OP3 | 87.4° | 109.5° |
P | O3' | C3' | 121.5° | 122.9° |
O3' | P | OP3 | 98.1° | 109.5° |
C3A | C3' | O3' | 110.3° | 109.5° |
C3A | C3' | C2' | 109.5° | 109.5° |
C3A | C3' | H8 | 109.4° | 109.5° |
C3' | C3A | H11 | 109.5° | 109.5° |
C3' | C3A | H12 | 109.5° | 109.5° |
C3' | C3A | H13 | 109.4° | 109.5° |
O3' | C3' | C2' | 106.6° | 109.4° |
O3' | C3' | H8 | 111.3° | 109.5° |
C6 | C5 | C4 | 117.7° | 119.0° |
C5 | C6 | N1 | 121.9° | 119.3° |
C5 | C6 | H3 | 119.0° | 120.4° |
C6 | C5 | H4 | 121.2° | 120.5° |
C5 | C4 | N4 | 119.4° | 120.2° |
C5 | C4 | N3 | 119.1° | 119.6° |
C4 | C5 | H4 | 121.1° | 120.5° |
C6 | N1 | C2B | 118.9° | 119.8° |
C6 | N1 | C2 | 120.7° | 120.4° |
N1 | C6 | H3 | 119.1° | 120.3° |
C3' | C2' | N2' | 108.3° | 109.5° |
C3' | C2' | C1' | 110.5° | 109.4° |
C3' | C2' | H7 | 108.6° | 109.5° |
C2' | C3' | H8 | 109.7° | 109.4° |
N1 | C2B | C2A | 108.8° | 109.5° |
C2B | N1 | C2 | 120.3° | 119.8° |
N1 | C2B | H16 | 109.6° | 109.5° |
N1 | C2B | H17 | 109.6° | 109.5° |
C2B | C2A | N2' | 114.3° | 120.0° |
C2B | C2A | O2A | 120.8° | 120.0° |
C2A | C2B | H16 | 109.6° | 109.5° |
C2A | C2B | H17 | 109.6° | 109.5° |
C2' | N2' | C2A | 120.2° | 120.0° |
N2' | C2' | C1' | 111.7° | 109.5° |
N2' | C2' | H7 | 109.2° | 109.5° |
C2' | N2' | H15 | 119.9° | 120.0° |
N2' | C2A | O2A | 124.9° | 120.0° |
C2A | N2' | H15 | 119.9° | 120.0° |
N1 | C2 | N3 | 118.7° | 121.1° |
N1 | C2 | O2 | 121.4° | 119.5° |
N4 | C4 | N3 | 121.5° | 120.2° |
C4 | N4 | H5 | 120.0° | 120.0° |
C4 | N4 | H6 | 120.0° | 120.1° |
C4 | N3 | C2 | 121.8° | 120.7° |
C2' | C1' | O1' | 106.4° | 109.5° |
C2' | C1' | H1 | 110.2° | 109.5° |
C2' | C1' | H2 | 110.2° | 109.5° |
C1' | C2' | H7 | 108.6° | 109.4° |
N3 | C2 | O2 | 119.9° | 119.5° |
O1' | C1' | H1 | 110.2° | 109.4° |
O1' | C1' | H2 | 110.2° | 109.4° |
C1' | O1' | H14 | 109.5° | 114.0° |
H1 | C1' | H2 | 109.5° | 109.4° |
H5 | N4 | H6 | 120.0° | 119.9° |
H11 | C3A | H12 | 109.4° | 109.4° |
H11 | C3A | H13 | 109.5° | 109.4° |
H12 | C3A | H13 | 109.5° | 109.5° |
H16 | C2B | H17 | 109.4° | 109.4° |
P | OP3 | HOP3 | 109.5° | 114.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP2 | P | OP1 | O3' | 164.8° | 120.0° |
OP2 | P | OP1 | OP3 | 97.5° | 120.0° |
OP2 | P | O3' | OP3 | 104.1° | 120.0° |
OP2 | P | O3' | C3' | 165.6° | 174.6° |
OP2 | P | OP3 | HOP3 | 119.7° | 62.8° |
OP1 | P | O3' | OP3 | 91.3° | 120.0° |
OP1 | P | O3' | C3' | 1.0° | 54.6° |
OP1 | P | OP2 | HOP2 | 0.0° | 60.0° |
OP1 | P | OP3 | HOP3 | 0.0° | 177.2° |
P | O3' | C3' | C3A | 73.8° | 113.5° |
P | O3' | C3' | C2' | 167.3° | 126.5° |
P | O3' | C3' | H8 | 47.8° | 6.5° |
O3' | P | OP2 | HOP2 | 164.2° | 180.0° |
O3' | P | OP3 | HOP3 | 117.4° | 57.1° |
C3A | C3' | O3' | C2' | 118.8° | 120.0° |
C3A | C3' | O3' | H8 | 121.6° | 120.1° |
C3A | C3' | C2' | H8 | 120.1° | 120.0° |
C3A | C3' | C2' | N2' | 68.7° | 176.8° |
C3A | C3' | C2' | C1' | 168.7° | 63.2° |
C3A | C3' | C2' | H7 | 49.7° | 56.7° |
C3' | C3A | H11 | H12 | 120.0° | 120.0° |
C3' | C3A | H11 | H13 | 120.0° | 120.0° |
C3' | C3A | H12 | H13 | 120.0° | 120.1° |
O3' | C3' | C2' | H8 | 120.6° | 120.0° |
O3' | C3' | C2' | N2' | 50.6° | 56.8° |
O3' | C3' | C2' | C1' | 71.9° | 176.8° |
O3' | C3' | C2' | H7 | 169.1° | 63.3° |
O3' | C3' | C3A | H11 | 180.0° | 60.0° |
O3' | C3' | C3A | H12 | 60.0° | 180.0° |
O3' | C3' | C3A | H13 | 60.0° | 59.9° |
C3' | O3' | P | OP3 | 90.3° | 65.5° |
C6 | C5 | C4 | H4 | 180.0° | 179.9° |
C5 | C6 | N1 | H3 | 180.0° | 180.0° |
C5 | C6 | N1 | C2B | 179.1° | 179.7° |
C5 | C6 | N1 | C2 | 1.0° | 0.0° |
C6 | C5 | C4 | N4 | 179.6° | 180.0° |
C6 | C5 | C4 | N3 | 0.6° | 0.1° |
C4 | C5 | C6 | N1 | 0.4° | 0.0° |
C5 | C4 | N4 | N3 | 179.8° | 179.9° |
C5 | C4 | N3 | C2 | 1.0° | 0.1° |
C4 | C5 | C6 | H3 | 179.5° | 180.0° |
C5 | C4 | N4 | H5 | 179.8° | 0.0° |
C5 | C4 | N4 | H6 | 0.2° | 179.9° |
C6 | N1 | C2B | C2 | 179.9° | 179.8° |
C6 | N1 | C2B | C2A | 86.8° | 89.7° |
C6 | N1 | C2 | N3 | 0.5° | 0.0° |
C6 | N1 | C2 | O2 | 179.1° | 180.0° |
N1 | C6 | C5 | H4 | 179.6° | 180.0° |
C6 | N1 | C2B | H16 | 33.1° | 30.2° |
C6 | N1 | C2B | H17 | 153.3° | 150.2° |
C3' | C2' | N2' | C1' | 121.9° | 120.0° |
C3' | C2' | N2' | H7 | 118.1° | 120.0° |
C3' | C2' | N2' | C2A | 131.4° | 155.0° |
C3' | C2' | C1' | H7 | 119.0° | 120.0° |
C3' | C2' | C1' | O1' | 92.5° | 54.3° |
C3' | C2' | C1' | H1 | 27.0° | 174.3° |
C3' | C2' | C1' | H2 | 148.0° | 65.7° |
C2' | C3' | C3A | H11 | 63.0° | 180.0° |
C2' | C3' | C3A | H12 | 57.0° | 60.1° |
C2' | C3' | C3A | H13 | 177.0° | 60.0° |
C3' | C2' | N2' | H15 | 48.7° | 25.0° |
N1 | C2B | C2A | H16 | 119.9° | 120.0° |
N1 | C2B | C2A | H17 | 119.9° | 120.0° |
N1 | C2B | C2A | N2' | 157.0° | 180.0° |
N1 | C2B | C2A | O2A | 22.8° | 0.0° |
C2B | N1 | C2 | N3 | 179.6° | 179.7° |
C2B | N1 | C2 | O2 | 0.8° | 0.2° |
C2B | N1 | C6 | H3 | 0.9° | 0.3° |
N1 | C2B | H16 | H17 | 120.3° | 120.0° |
C2B | C2A | N2' | C2' | 177.8° | 180.0° |
C2B | C2A | N2' | O2A | 179.8° | 180.0° |
C2A | C2B | N1 | C2 | 93.0° | 90.0° |
C2B | C2A | N2' | H15 | 2.2° | 0.0° |
C2A | C2B | H16 | H17 | 120.3° | 120.0° |
C2' | N2' | C2A | H15 | 180.0° | 180.0° |
N2' | C2' | C1' | H7 | 120.4° | 120.0° |
C2' | N2' | C2A | O2A | 1.9° | 0.0° |
N2' | C2' | C1' | O1' | 146.9° | 65.7° |
N2' | C2' | C1' | H1 | 93.6° | 54.2° |
N2' | C2' | C1' | H2 | 27.4° | 174.3° |
N2' | C2' | C3' | H8 | 171.2° | 63.2° |
C2A | N2' | C2' | C1' | 106.8° | 85.0° |
C2A | N2' | C2' | H7 | 13.3° | 35.0° |
N2' | C2A | C2B | H16 | 37.1° | 60.0° |
N2' | C2A | C2B | H17 | 83.1° | 60.0° |
N1 | C2 | N3 | C4 | 0.5° | 0.0° |
N1 | C2 | N3 | O2 | 179.6° | 180.0° |
C2 | N1 | C6 | H3 | 179.0° | 180.0° |
C2 | N1 | C2B | H16 | 147.0° | 150.0° |
C2 | N1 | C2B | H17 | 26.9° | 30.0° |
N4 | C4 | N3 | C2 | 179.1° | 180.0° |
N4 | C4 | C5 | H4 | 0.4° | 0.0° |
C4 | N4 | H5 | H6 | 180.0° | 179.9° |
C4 | N3 | C2 | O2 | 179.9° | 180.0° |
N3 | C4 | C5 | H4 | 179.4° | 180.0° |
N3 | C4 | N4 | H5 | 0.0° | 179.9° |
N3 | C4 | N4 | H6 | 180.0° | 0.0° |
C2' | C1' | O1' | H1 | 119.5° | 120.0° |
C2' | C1' | O1' | H2 | 119.5° | 120.1° |
C2' | C1' | H1 | H2 | 121.4° | 120.1° |
C1' | C2' | C3' | H8 | 48.6° | 56.8° |
C2' | C1' | O1' | H14 | 180.0° | 175.0° |
C1' | C2' | N2' | H15 | 73.2° | 95.0° |
O2A | C2A | N2' | H15 | 178.0° | 180.0° |
O2A | C2A | C2B | H16 | 142.7° | 120.0° |
O2A | C2A | C2B | H17 | 97.1° | 120.0° |
O1' | C1' | H1 | H2 | 121.4° | 119.9° |
O1' | C1' | C2' | H7 | 26.5° | 174.3° |
H1 | C1' | C2' | H7 | 146.0° | 65.8° |
H1 | C1' | O1' | H14 | 60.5° | 55.0° |
H2 | C1' | C2' | H7 | 93.0° | 54.3° |
H2 | C1' | O1' | H14 | 60.5° | 64.9° |
H3 | C6 | C5 | H4 | 0.5° | 0.0° |
H7 | C2' | C3' | H8 | 70.4° | 176.8° |
H7 | C2' | N2' | H15 | 166.7° | 145.0° |
H8 | C3' | C3A | H11 | 57.3° | 60.0° |
H8 | C3' | C3A | H12 | 177.3° | 59.9° |
H8 | C3' | C3A | H13 | 62.7° | 180.0° |
HOP2 | OP2 | P | OP3 | 91.5° | 60.0° |
H11 | C3A | H12 | H13 | 120.0° | 119.9° |