F6U
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP2 | P | sing | 1.61Å | 1.48Å | |
| P | OP1 | doub | 1.48Å | 1.48Å | |
| P | O3' | sing | 1.61Å | 1.61Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| C3' | C3A | sing | 1.53Å | 1.53Å | |
| C3' | C2' | sing | 1.53Å | 1.55Å | |
| C1' | O1' | sing | 1.43Å | 1.46Å | |
| C1' | C2' | sing | 1.53Å | 1.53Å | |
| N2' | C2' | sing | 1.46Å | 1.46Å | |
| N2' | C2A | sing | 1.35Å | 1.33Å | |
| C2B | C2A | sing | 1.51Å | 1.53Å | |
| C2B | N9 | sing | 1.46Å | 1.51Å | |
| C2A | O2A | doub | 1.21Å | 1.22Å | |
| N9 | C8 | sing | 1.36Å | 1.32Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.33Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.33Å | Aromatic |
| C4 | N3 | sing | 1.33Å | 1.35Å | Aromatic |
| C4 | C5 | doub | 1.40Å | 1.34Å | Aromatic |
| N7 | C5 | sing | 1.35Å | 1.34Å | Aromatic |
| N3 | C2 | doub | 1.32Å | 1.45Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.33Å | Aromatic |
| C2 | N1 | sing | 1.32Å | 1.48Å | Aromatic |
| C6 | N1 | doub | 1.33Å | 1.34Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.33Å | |
| C2 | H1 | sing | 1.08Å | 1.08Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| C3' | H4 | sing | 1.09Å | 1.10Å | |
| C3A | H5 | sing | 1.09Å | 1.10Å | |
| C3A | H6 | sing | 1.09Å | 1.10Å | |
| C3A | H7 | sing | 1.09Å | 1.10Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| C1' | H9 | sing | 1.09Å | 1.10Å | |
| C1' | H10 | sing | 1.09Å | 1.10Å | |
| O1' | H11 | sing | 0.97Å | 0.95Å | |
| N2' | H12 | sing | 0.97Å | 1.00Å | |
| C2B | H13 | sing | 1.09Å | 1.10Å | |
| C2B | H14 | sing | 1.09Å | 1.10Å | |
| C8 | H15 | sing | 1.08Å | 1.08Å | |
| N6 | H16 | sing | 0.97Å | 1.00Å | |
| N6 | H17 | sing | 0.97Å | 1.00Å | |
| P | OP3 | sing | 1.61Å | 1.50Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP2 | P | OP1 | 114.8° | 109.5° |
| OP2 | P | O3' | 107.3° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| OP2 | P | OP3 | 112.0° | 109.5° |
| OP1 | P | O3' | 110.8° | 109.5° |
| OP1 | P | OP3 | 125.2° | 109.4° |
| P | O3' | C3' | 119.1° | 123.0° |
| O3' | P | OP3 | 79.9° | 109.5° |
| O3' | C3' | C3A | 109.5° | 109.5° |
| O3' | C3' | C2' | 110.1° | 109.5° |
| O3' | C3' | H4 | 110.0° | 109.5° |
| C3A | C3' | C2' | 110.1° | 109.5° |
| C3A | C3' | H4 | 108.6° | 109.5° |
| C3' | C3A | H5 | 109.5° | 109.5° |
| C3' | C3A | H6 | 109.4° | 109.5° |
| C3' | C3A | H7 | 109.5° | 109.5° |
| C3' | C2' | C1' | 111.5° | 109.4° |
| C3' | C2' | N2' | 109.9° | 109.5° |
| C2' | C3' | H4 | 108.4° | 109.5° |
| C3' | C2' | H8 | 109.8° | 109.4° |
| O1' | C1' | C2' | 111.1° | 109.5° |
| O1' | C1' | H9 | 109.1° | 109.4° |
| O1' | C1' | H10 | 109.1° | 109.4° |
| C1' | O1' | H11 | 109.5° | 114.0° |
| C1' | C2' | N2' | 104.6° | 109.5° |
| C1' | C2' | H8 | 110.0° | 109.5° |
| C2' | C1' | H9 | 109.1° | 109.5° |
| C2' | C1' | H10 | 109.1° | 109.6° |
| C2' | N2' | C2A | 123.0° | 120.0° |
| N2' | C2' | H8 | 111.0° | 109.5° |
| C2' | N2' | H12 | 118.5° | 120.0° |
| N2' | C2A | C2B | 115.0° | 120.0° |
| N2' | C2A | O2A | 123.3° | 120.0° |
| C2A | N2' | H12 | 118.5° | 120.0° |
| C2A | C2B | N9 | 110.2° | 109.5° |
| C2B | C2A | O2A | 121.7° | 120.0° |
| C2A | C2B | H13 | 109.3° | 109.5° |
| C2A | C2B | H14 | 109.3° | 109.5° |
| C2B | N9 | C8 | 130.9° | 126.3° |
| C2B | N9 | C4 | 121.8° | 126.3° |
| N9 | C2B | H13 | 109.3° | 109.5° |
| N9 | C2B | H14 | 109.3° | 109.5° |
| C8 | N9 | C4 | 107.2° | 107.4° |
| N9 | C8 | N7 | 109.7° | 110.0° |
| N9 | C8 | H15 | 125.2° | 125.0° |
| N9 | C4 | N3 | 129.5° | 134.9° |
| N9 | C4 | C5 | 108.2° | 106.0° |
| C8 | N7 | C5 | 106.9° | 109.5° |
| N7 | C8 | H15 | 125.2° | 125.1° |
| N3 | C4 | C5 | 122.3° | 119.1° |
| C4 | N3 | C2 | 122.7° | 120.6° |
| C4 | C5 | N7 | 107.9° | 107.1° |
| C4 | C5 | C6 | 119.8° | 118.2° |
| N7 | C5 | C6 | 132.2° | 134.7° |
| N3 | C2 | N1 | 110.4° | 122.5° |
| N3 | C2 | H1 | 124.8° | 118.7° |
| C5 | C6 | N1 | 121.8° | 118.4° |
| C5 | C6 | N6 | 116.6° | 120.8° |
| C2 | N1 | C6 | 122.9° | 121.2° |
| N1 | C2 | H1 | 124.8° | 118.8° |
| N1 | C6 | N6 | 121.5° | 120.8° |
| C6 | N6 | H16 | 109.5° | 120.0° |
| C6 | N6 | H17 | 109.4° | 120.0° |
| H5 | C3A | H6 | 109.5° | 109.5° |
| H5 | C3A | H7 | 109.4° | 109.4° |
| H6 | C3A | H7 | 109.5° | 109.5° |
| H9 | C1' | H10 | 109.5° | 109.5° |
| H13 | C2B | H14 | 109.5° | 109.4° |
| H16 | N6 | H17 | 109.4° | 120.0° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP2 | P | OP1 | O3' | 121.7° | 120.1° |
| OP2 | P | OP1 | OP3 | 146.1° | 120.0° |
| OP2 | P | O3' | OP3 | 110.1° | 120.0° |
| OP2 | P | O3' | C3' | 149.4° | 65.0° |
| OP2 | P | OP3 | HOP3 | 146.9° | 59.9° |
| OP1 | P | O3' | OP3 | 123.9° | 120.0° |
| OP1 | P | O3' | C3' | 23.4° | 55.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 180.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 60.0° |
| P | O3' | C3' | C3A | 80.3° | 120.0° |
| P | O3' | C3' | C2' | 158.5° | 120.0° |
| O3' | P | OP2 | HOP2 | 123.6° | 60.0° |
| P | O3' | C3' | H4 | 39.0° | 0.0° |
| O3' | P | OP3 | HOP3 | 108.5° | 180.0° |
| O3' | C3' | C3A | C2' | 121.2° | 120.0° |
| O3' | C3' | C3A | H4 | 120.2° | 120.0° |
| O3' | C3' | C2' | H4 | 120.4° | 120.0° |
| O3' | C3' | C2' | C1' | 61.2° | 55.1° |
| O3' | C3' | C2' | N2' | 54.3° | 65.0° |
| O3' | C3' | C3A | H5 | 180.0° | 60.0° |
| O3' | C3' | C3A | H6 | 60.0° | 60.0° |
| O3' | C3' | C3A | H7 | 60.0° | 180.0° |
| O3' | C3' | C2' | H8 | 176.7° | 175.0° |
| C3' | O3' | P | OP3 | 100.5° | 175.0° |
| C3A | C3' | C2' | H4 | 118.7° | 120.0° |
| C3A | C3' | C2' | C1' | 178.0° | 175.0° |
| C3A | C3' | C2' | N2' | 66.5° | 55.0° |
| C3' | C3A | H5 | H6 | 120.0° | 120.0° |
| C3' | C3A | H5 | H7 | 120.0° | 120.0° |
| C3' | C3A | H6 | H7 | 120.0° | 120.0° |
| C3A | C3' | C2' | H8 | 55.8° | 65.0° |
| C3' | C2' | C1' | O1' | 64.9° | 55.0° |
| C3' | C2' | C1' | N2' | 118.7° | 120.0° |
| C3' | C2' | C1' | H8 | 122.0° | 119.9° |
| C3' | C2' | N2' | H8 | 121.7° | 120.0° |
| C3' | C2' | N2' | C2A | 109.1° | 155.0° |
| C2' | C3' | C3A | H5 | 58.8° | 60.0° |
| C2' | C3' | C3A | H6 | 61.3° | 180.0° |
| C2' | C3' | C3A | H7 | 178.8° | 60.0° |
| C3' | C2' | C1' | H9 | 174.9° | 175.0° |
| C3' | C2' | C1' | H10 | 55.3° | 65.0° |
| C3' | C2' | N2' | H12 | 71.0° | 25.1° |
| O1' | C1' | C2' | H9 | 120.2° | 119.9° |
| O1' | C1' | C2' | H10 | 120.2° | 120.0° |
| O1' | C1' | C2' | N2' | 176.4° | 65.0° |
| O1' | C1' | C2' | H8 | 57.1° | 175.0° |
| O1' | C1' | H9 | H10 | 119.3° | 119.9° |
| C1' | C2' | N2' | H8 | 118.6° | 120.0° |
| C1' | C2' | N2' | C2A | 131.2° | 85.0° |
| C1' | C2' | C3' | H4 | 59.3° | 65.0° |
| C2' | C1' | H9 | H10 | 119.3° | 120.1° |
| C2' | C1' | O1' | H11 | 180.0° | 179.9° |
| C1' | C2' | N2' | H12 | 48.8° | 94.9° |
| C2' | N2' | C2A | H12 | 180.0° | 179.9° |
| C2' | N2' | C2A | C2B | 178.6° | 180.0° |
| C2' | N2' | C2A | O2A | 1.2° | 0.1° |
| N2' | C2' | C3' | H4 | 174.8° | 175.0° |
| N2' | C2' | C1' | H9 | 56.1° | 55.0° |
| N2' | C2' | C1' | H10 | 63.4° | 175.0° |
| N2' | C2A | C2B | O2A | 177.4° | 179.9° |
| N2' | C2A | C2B | N9 | 177.7° | 180.0° |
| C2A | N2' | C2' | H8 | 12.6° | 35.1° |
| N2' | C2A | C2B | H13 | 62.2° | 60.0° |
| N2' | C2A | C2B | H14 | 57.6° | 59.9° |
| C2A | C2B | N9 | H13 | 120.1° | 120.0° |
| C2A | C2B | N9 | H14 | 120.1° | 120.1° |
| C2A | C2B | N9 | C8 | 83.4° | 95.0° |
| C2A | C2B | N9 | C4 | 94.0° | 85.0° |
| C2B | C2A | N2' | H12 | 1.4° | 0.1° |
| C2A | C2B | H13 | H14 | 119.7° | 120.0° |
| N9 | C2B | C2A | O2A | 0.2° | 0.1° |
| C2B | N9 | C8 | C4 | 177.7° | 180.0° |
| C2B | N9 | C8 | N7 | 177.8° | 180.0° |
| C2B | N9 | C4 | N3 | 1.2° | 0.0° |
| C2B | N9 | C4 | C5 | 178.5° | 180.0° |
| N9 | C2B | H13 | H14 | 119.7° | 120.0° |
| C2B | N9 | C8 | H15 | 2.2° | 0.1° |
| O2A | C2A | N2' | H12 | 178.8° | 180.0° |
| O2A | C2A | C2B | H13 | 120.4° | 120.1° |
| O2A | C2A | C2B | H14 | 119.9° | 120.0° |
| N9 | C8 | N7 | H15 | 180.0° | 180.0° |
| C8 | N9 | C4 | N3 | 179.1° | 180.0° |
| C8 | N9 | C4 | C5 | 0.6° | 0.0° |
| N9 | C8 | N7 | C5 | 0.4° | 0.0° |
| C8 | N9 | C2B | H13 | 156.5° | 145.0° |
| C8 | N9 | C2B | H14 | 36.7° | 25.0° |
| C4 | N9 | C8 | N7 | 0.1° | 0.0° |
| N9 | C4 | N3 | C5 | 179.6° | 179.9° |
| N9 | C4 | C5 | N7 | 0.8° | 0.1° |
| N9 | C4 | N3 | C2 | 180.0° | 180.0° |
| N9 | C4 | C5 | C6 | 178.4° | 180.0° |
| C4 | N9 | C2B | H13 | 26.1° | 35.0° |
| C4 | N9 | C2B | H14 | 145.9° | 155.0° |
| C4 | N9 | C8 | H15 | 179.9° | 180.0° |
| C8 | N7 | C5 | C4 | 0.7° | 0.1° |
| C8 | N7 | C5 | C6 | 178.4° | 180.0° |
| N3 | C4 | C5 | N7 | 178.9° | 180.0° |
| N3 | C4 | C5 | C6 | 1.8° | 0.0° |
| C4 | N3 | C2 | N1 | 0.5° | 0.0° |
| C4 | N3 | C2 | H1 | 179.5° | 180.0° |
| C4 | C5 | N7 | C6 | 179.1° | 180.0° |
| C5 | C4 | N3 | C2 | 0.3° | 0.0° |
| C4 | C5 | C6 | N1 | 2.5° | 0.0° |
| C4 | C5 | C6 | N6 | 179.1° | 180.0° |
| N7 | C5 | C6 | N1 | 178.5° | 180.0° |
| N7 | C5 | C6 | N6 | 0.0° | 0.0° |
| C5 | N7 | C8 | H15 | 179.6° | 180.0° |
| N3 | C2 | N1 | H1 | 180.0° | 180.0° |
| N3 | C2 | N1 | C6 | 0.1° | 0.0° |
| C5 | C6 | N1 | C2 | 1.6° | 0.0° |
| C5 | C6 | N1 | N6 | 178.4° | 180.0° |
| C5 | C6 | N6 | H16 | 178.5° | 0.0° |
| C5 | C6 | N6 | H17 | 61.5° | 180.0° |
| C2 | N1 | C6 | N6 | 180.0° | 180.0° |
| C6 | N1 | C2 | H1 | 179.9° | 180.0° |
| N1 | C6 | N6 | H16 | 0.0° | 180.0° |
| N1 | C6 | N6 | H17 | 120.0° | 0.0° |
| C6 | N6 | H16 | H17 | 120.0° | 180.0° |
| HOP2 | OP2 | P | OP3 | 150.5° | 60.0° |
| H4 | C3' | C3A | H5 | 59.8° | 180.0° |
| H4 | C3' | C3A | H6 | 179.8° | 60.0° |
| H4 | C3' | C3A | H7 | 60.2° | 60.0° |
| H4 | C3' | C2' | H8 | 62.9° | 55.0° |
| H5 | C3A | H6 | H7 | 120.0° | 120.0° |
| H8 | C2' | C1' | H9 | 63.1° | 65.1° |
| H8 | C2' | C1' | H10 | 177.4° | 55.0° |
| H8 | C2' | N2' | H12 | 167.4° | 145.0° |
| H9 | C1' | O1' | H11 | 59.8° | 60.0° |
| H10 | C1' | O1' | H11 | 59.8° | 60.0° |
