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F5K

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C6sing1.37Å1.38Å
N1C2sing1.40Å1.47Å
N1C1'sing1.50Å1.45Å
C2N3sing1.36Å1.53Å
C2O2doub1.24Å1.12Å
N3C4doub1.34Å1.32Å
C4C5sing1.42Å1.50Å
C4N4sing1.33Å1.29Å
C5C6doub1.34Å1.30Å
C1'O4Dsing1.41Å1.43Å
C1'C2Dsing1.54Å1.57Å
C2DO2'sing1.42Å1.43Å
C2DC3'sing1.54Å1.44Å
C3'C4Dsing1.53Å1.60Å
C3'O3'sing1.42Å1.47Å
C4DC5'sing1.51Å1.41Å
C4DO4Dsing1.44Å1.51Å
C5'O5'sing1.45Å1.41Å
O5'PAsing1.59Å1.55Å
PAO1Adoub1.48Å1.53Å
PAO3Asing1.59Å1.69Å
PAO2Asing1.52Å1.49Å
O3APBsing1.59Å1.58Å
PBO1Bdoub1.48Å1.47Å
PBO3Bsing1.59Å1.57Å
PBO2Bsing1.52Å1.49Å
O3BC10sing1.44Å1.49Å
C10C9'sing1.53Å1.49Å
C9'C8'sing1.52Å1.63Å
C9'O9'sing1.44Å1.33Å
C8'C7'doub1.35Å1.24Å
C8'S8'sing1.68Å1.68Å
S8'MOsing2.33Å2.34Å
C7'S7'sing1.68Å1.79Å
C7'C6'sing1.53Å1.56Å
S7'MOsing2.32Å2.31Å
C6'N5'sing1.46Å1.56Å
C6'C7sing1.56Å1.60Å
C7O9'sing1.44Å1.37Å
C7N8'sing1.46Å1.48Å
N5'C4Asing1.38Å1.50Å
C4AC4'sing1.44Å1.47Å
C4AC4Bdoub1.41Å1.57Å
N8'C4Bsing1.36Å1.35Å
C4BN1'sing1.36Å1.40Å
N1'C2'doub1.34Å1.40Å
C2'N3'sing1.37Å1.37Å
C2'N2'sing1.33Å1.25Å
N3'C4'sing1.39Å1.39Å
C4'O4'doub1.23Å1.25Å
MOO1doub1.70Å1.79Å
MOO21sing1.70Å2.09Å
MOSsing2.48Å2.32Å
C5H1sing0.94Å1.08Å
C6H2sing0.94Å1.08Å
N4H3sing0.88Å1.00Å
N4H4sing0.88Å1.00Å
C1'H5sing0.99Å1.10Å
C2DH6sing0.98Å1.10Å
O2'H7sing0.84Å0.95Å
C3'H8sing0.99Å1.10Å
C4DH9sing0.99Å1.10Å
O3'H10sing0.84Å0.95Å
C5'H11sing0.99Å1.10Å
C5'H12sing0.99Å1.10Å
O2AH13sing0.89Å0.95Å
O2BH14sing0.89Å0.95Å
C10H15sing0.98Å1.10Å
C10H16sing0.98Å1.10Å
C9'H17sing0.99Å1.10Å
C6'H20sing0.99Å1.10Å
C7H21sing0.99Å1.10Å
N5'H22sing0.87Å1.00Å
N8'H25sing0.89Å1.00Å
N2'H29sing0.88Å1.00Å
N3'H30sing0.88Å1.00Å
H28N2'sing0.88Å1.00Å
H18O21sing0.87Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C6N1C2126.4°119.5°
C6N1C1'121.8°122.3°
N1C6C5123.4°121.9°
N1C6H2118.3°118.9°
C2N1C1'111.2°118.3°
N1C2N3103.5°119.0°
N1C2O2130.5°119.8°
N1C1'O4D109.7°109.3°
N1C1'C2D111.8°113.4°
N1C1'H5110.4°109.5°
N3C2O2126.0°121.1°
C2N3C4133.3°121.0°
N3C4C5112.1°120.8°
N3C4N4129.1°118.1°
C5C4N4118.6°121.1°
C4C5C6120.1°117.8°
C4C5H1119.9°121.1°
C4N4H3120.0°119.9°
C4N4H4120.0°120.7°
C6C5H1120.0°121.1°
C5C6H2118.3°119.2°
O4DC1'C2D105.4°108.6°
C1'O4DC4D115.0°110.3°
O4DC1'H5110.7°107.9°
C1'C2DO2'109.7°109.5°
C1'C2DC3'98.4°102.6°
C2DC1'H5108.8°108.0°
C1'C2DH6110.5°110.0°
O2'C2DC3'112.1°114.5°
O2'C2DH6112.8°110.0°
C2DO2'H7109.5°110.8°
C2DC3'C4D111.4°103.2°
C2DC3'O3'118.5°112.0°
C3'C2DH6112.5°109.9°
C2DC3'H8107.9°109.2°
C4DC3'O3'104.8°111.3°
C3'C4DC5'124.8°116.4°
C3'C4DO4D94.9°104.6°
C4DC3'H8106.1°111.1°
C3'C4DH9108.3°109.3°
O3'C3'H8107.5°109.8°
C3'O3'H10109.5°110.9°
C5'C4DO4D106.9°109.7°
C4DC5'O5'113.7°109.8°
C5'C4DH9110.7°107.9°
C4DC5'H11108.4°109.3°
C4DC5'H12108.4°109.8°
O4DC4DH9109.4°108.8°
C5'O5'PA118.4°124.1°
O5'C5'H11108.4°110.0°
O5'C5'H12108.4°109.8°
O5'PAO1A106.6°116.3°
O5'PAO3A103.8°104.4°
O5'PAO2A110.3°107.6°
O1APAO3A107.7°108.6°
O1APAO2A121.1°113.9°
O3APAO2A106.1°105.0°
PAO3APB123.7°133.5°
PAO2AH13109.5°113.2°
O3APBO1B110.3°109.1°
O3APBO3B97.8°104.9°
O3APBO2B109.6°105.2°
O1BPBO3B112.5°114.7°
O1BPBO2B119.5°113.8°
O3BPBO2B104.9°108.4°
PBO3BC10119.2°123.6°
PBO2BH14109.5°113.2°
O3BC10C9'113.8°109.8°
O3BC10H15108.4°110.0°
O3BC10H16108.4°110.0°
C10C9'C8'106.5°112.9°
C10C9'O9'111.0°104.5°
C9'C10H15108.3°109.7°
C9'C10H16108.4°109.3°
C10C9'H17105.6°108.2°
C8'C9'O9'120.9°114.9°
C9'C8'C7'115.1°121.7°
C9'C8'S8'120.8°119.4°
C8'C9'H17104.2°107.1°
C9'O9'C7105.3°124.2°
O9'C9'H17107.4°109.0°
C7'C8'S8'123.3°118.9°
C8'C7'S7'121.8°120.5°
C8'C7'C6'123.3°122.7°
C8'S8'MO105.1°103.6°
S8'MOS7'84.0°80.7°
S8'MOO1109.9°89.9°
S8'MOO2191.1°95.0°
S8'MOS153.9°175.2°
S7'C7'C6'114.1°116.8°
C7'S7'MO102.9°104.2°
C7'C6'N5'102.7°109.3°
C7'C6'C7105.2°112.9°
C7'C6'H20113.7°107.2°
S7'MOO1100.8°90.4°
S7'MOO21156.1°175.7°
S7'MOS94.2°94.5°
N5'C6'C7107.5°113.1°
C6'N5'C4A118.2°123.1°
N5'C6'H20113.8°107.8°
C6'N5'H22107.2°119.5°
C6'C7O9'112.5°113.2°
C6'C7N8'106.7°112.8°
C7C6'H20113.0°106.2°
C6'C7H21108.9°108.6°
O9'C7N8'105.8°105.9°
O9'C7H21112.2°108.4°
C7N8'C4B120.3°123.0°
N8'C7H21110.6°107.6°
C7N8'H25106.7°118.9°
N5'C4AC4'129.6°121.2°
N5'C4AC4B110.9°119.6°
C4AN5'H22107.2°117.4°
C4'C4AC4B117.9°119.3°
C4AC4'N3'112.3°115.0°
C4AC4'O4'111.5°125.3°
C4AC4BN8'124.9°121.1°
C4AC4BN1'115.6°122.3°
N8'C4BN1'118.4°116.6°
C4BN8'H25106.7°118.1°
C4BN1'C2'122.5°118.0°
N1'C2'N3'114.4°123.0°
N1'C2'N2'123.0°119.2°
N3'C2'N2'118.2°117.9°
C2'N3'C4'130.7°122.5°
C2'N3'H30114.7°119.1°
C2'N2'H29120.0°120.1°
C2'N2'H28120.0°120.6°
N3'C4'O4'134.9°119.7°
C4'N3'H30114.6°118.5°
O1MOO21102.9°90.4°
O1MOS96.0°90.1°
O21MOS80.1°89.8°
MOO21H18109.5°109.4°
H3N4H4120.0°119.4°
H11C5'H12109.5°108.1°
H15C10H16109.5°107.9°
H29N2'H28120.0°119.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C6N1C2C1'171.6°179.4°
C6N1C2N30.0°0.5°
C6N1C2O2177.9°179.7°
N1C6C5C47.3°0.2°
N1C6C5H2180.0°180.0°
C6N1C1'O4D6.0°35.6°
C6N1C1'C2D110.6°85.7°
N1C6C5H1172.7°179.7°
C6N1C1'H5128.3°153.7°
N1C2N3O2178.0°179.9°
N1C2N3C47.1°0.3°
C2N1C6C51.2°0.4°
C2N1C1'O4D166.0°145.0°
C2N1C1'C2D77.4°93.7°
C2N1C6H2178.8°179.6°
C2N1C1'H543.7°26.9°
C1'N1C2N3171.6°179.9°
C1'N1C2O210.5°0.3°
C1'N1C6C5171.9°179.8°
N1C1'O4DC2D120.5°124.2°
N1C1'O4DH5122.1°119.1°
N1C1'C2DH5122.1°121.5°
N1C1'C2DO2'154.0°130.7°
N1C1'C2DC3'88.9°107.3°
N1C1'O4DC4D109.0°130.6°
C1'N1C6H28.1°0.2°
N1C1'C2DH629.0°9.6°
C2N3C4C512.7°0.1°
C2N3C4N4172.7°180.0°
O2C2N3C4174.9°179.8°
N3C4C5N4175.2°179.9°
N3C4C5C611.9°0.0°
N3C4C5H1168.1°179.9°
N3C4N4H30.0°0.1°
N3C4N4H4180.0°180.0°
C4C5C6H1180.0°179.9°
C4C5C6H2172.7°179.8°
C5C4N4H3174.3°180.0°
C5C4N4H45.7°0.1°
N4C4C5C6172.9°179.9°
N4C4C5H17.1°0.0°
C4N4H3H4180.0°179.9°
O4DC1'C2DH5118.7°116.7°
O4DC1'C2DO2'86.9°107.6°
O4DC1'C2DC3'30.2°14.4°
C1'O4DC4DC3'10.7°24.7°
C1'O4DC4DC5'139.4°150.3°
O4DC1'C2DH6148.2°131.4°
C1'O4DC4DH9100.6°92.0°
C1'C2DO2'C3'108.2°114.6°
C1'C2DO2'H6123.6°121.1°
C1'C2DC3'H6116.4°117.0°
C1'C2DC3'C4D39.7°28.1°
C1'C2DC3'O3'161.3°148.0°
C2DC1'O4DC4D11.5°6.4°
C1'C2DO2'H7180.0°172.3°
C1'C2DC3'H876.4°90.1°
O2'C2DC3'H6128.3°124.4°
O2'C2DC3'C4D75.5°90.4°
O2'C2DC3'O3'46.0°29.5°
O2'C2DC1'H531.9°9.2°
O2'C2DC3'H8168.4°151.3°
C2DC3'C4DO3'129.2°120.3°
C2DC3'C4DH8117.2°116.9°
C2DC3'O3'H8122.5°121.5°
C2DC3'C4DC5'147.3°153.9°
C2DC3'C4DO4D32.7°32.7°
C3'C2DC1'H5149.0°131.2°
C3'C2DO2'H771.8°73.1°
C2DC3'C4DH979.6°83.6°
C2DC3'O3'H10180.0°169.7°
C4DC3'O3'H8112.6°123.5°
C3'C4DC5'O4D108.7°118.5°
C3'C4DC5'H9132.2°123.2°
C3'C4DO4DH9111.4°116.7°
C3'C4DC5'O5'25.3°73.7°
C4DC3'C2DH6156.2°145.2°
C4DC3'O3'H1055.1°75.3°
C3'C4DC5'H11145.9°165.5°
C3'C4DC5'H1295.4°47.1°
O3'C3'C4DC5'83.5°85.8°
O3'C3'C4DO4D162.0°153.0°
O3'C3'C2DH682.3°95.0°
O3'C3'C4DH949.7°36.7°
C5'C4DO4DH9119.9°117.8°
C4DC5'O5'H11120.6°120.3°
C4DC5'O5'H12120.6°120.8°
C4DC5'O5'PA163.1°107.5°
C5'C4DC3'H830.1°36.9°
C4DC5'H11H12118.0°119.5°
O4DC4DC5'O5'83.5°167.8°
C4DO4DC1'H5129.0°110.4°
O4DC4DC3'H884.4°84.2°
O4DC4DC5'H1137.2°47.1°
O4DC4DC5'H12155.9°71.3°
C5'O5'PAO1A166.7°32.7°
C5'O5'PAO3A53.2°152.4°
C5'O5'PAO2A60.1°96.4°
O5'C5'C4DH9157.5°49.5°
O5'C5'H11H12118.1°119.9°
O5'PAO1AO3A110.8°117.4°
O5'PAO1AO2A127.1°126.0°
O5'PAO3AO2A116.3°113.1°
O5'PAO3APB82.5°2.1°
PAO5'C5'H1142.4°12.8°
PAO5'C5'H1276.3°131.7°
O5'PAO2AH13125.4°180.0°
O1APAO3AO2A130.9°122.2°
O1APAO3APB30.3°122.5°
O1APAO2AH130.0°49.5°
PAO3APBO1B88.0°85.4°
PAO3APBO3B154.4°151.3°
PAO3APBO2B45.5°37.0°
O3APAO2AH13122.8°69.2°
O2APAO3APB161.2°115.3°
O3APBO1BO3B108.0°117.3°
O3APBO1BO2B128.4°117.1°
O3APBO3BO2B112.8°111.9°
O3APBO3BC1085.0°56.0°
O3APBO2BH14128.7°179.9°
O1BPBO3BO2B131.4°128.4°
O1BPBO3BC1030.8°175.7°
O1BPBO2BH140.0°60.7°
PBO3BC10C9'101.8°143.5°
O3BPBO2BH14127.2°68.2°
PBO3BC10H15137.5°22.7°
PBO3BC10H1618.8°96.1°
O2BPBO3BC10162.2°55.9°
O3BC10C9'H15120.6°121.0°
O3BC10C9'H16120.6°120.8°
O3BC10C9'C8'174.5°151.0°
O3BC10C9'O9'52.0°83.4°
O3BC10H15H16118.0°120.1°
O3BC10C9'H1764.1°32.7°
C10C9'C8'O9'127.8°119.8°
C10C9'C8'H17111.3°119.0°
C10C9'O9'H17115.0°115.5°
C10C9'C8'C7'126.1°109.2°
C10C9'C8'S8'44.1°70.7°
C10C9'O9'C7168.0°134.9°
C9'C10H15H16118.0°119.0°
C8'C9'O9'H17119.2°120.1°
C9'C8'C7'S8'169.9°179.9°
C9'C8'S8'MO159.1°152.0°
C9'C8'C7'S7'172.4°175.2°
C9'C8'C7'C6'18.7°5.4°
C8'C9'O9'C742.2°10.6°
C8'C9'C10H1564.9°30.0°
C8'C9'C10H1653.8°88.2°
O9'C9'C8'C7'1.7°10.6°
O9'C9'C8'S8'171.9°169.5°
C9'O9'C7C6'70.1°33.4°
C9'O9'C7N8'173.8°157.6°
O9'C9'C10H1568.6°155.6°
O9'C9'C10H16172.7°37.4°
C9'O9'C7H2153.1°87.2°
C7'C8'S8'MO10.2°27.9°
C8'C7'S7'C6'169.8°179.4°
C8'C7'S7'MO13.9°21.3°
C8'C7'C6'N5'106.7°109.0°
C8'C7'C6'C75.7°17.8°
C7'C8'C9'H17122.6°131.8°
C8'C7'C6'H20129.9°134.4°
S8'C8'C7'S7'2.6°4.7°
S8'C8'C7'C6'171.4°174.6°
C8'S8'MOS7'13.6°29.3°
C8'S8'MOO185.7°119.6°
C8'S8'MOO21170.2°150.0°
C8'S8'MOS100.7°29.8°
S8'C8'C9'H1767.3°48.3°
S8'MOS7'C7'13.9°27.4°
S8'MOS7'O1109.2°89.9°
S8'MOS7'O2179.1°9.4°
S8'MOS7'S153.9°180.0°
S8'MOO1O2196.0°95.0°
S8'MOO1S177.2°175.2°
S8'MOO21S155.3°180.0°
S8'MOO21H18155.3°136.7°
S7'C7'C6'N5'83.7°71.6°
S7'C7'C6'C7163.9°161.6°
C7'S7'MOO195.3°117.3°
C7'S7'MOO2193.0°18.0°
C7'S7'MOS167.8°152.7°
S7'C7'C6'H2039.7°44.9°
C6'C7'S7'MO176.3°159.3°
C7'C6'N5'C7110.7°126.7°
C7'C6'N5'H20123.4°116.2°
C7'C6'C7H20124.6°117.2°
C7'C6'C7O9'53.8°35.2°
C7'C6'C7N8'169.4°155.5°
C7'C6'N5'C4A163.0°149.6°
C7'C6'C7H2171.2°85.3°
C7'C6'N5'H2241.8°31.0°
S7'MOO1O21176.6°175.7°
S7'MOO1S95.4°94.5°
S7'MOO21S77.7°170.6°
S7'MOO21H1877.7°127.4°
N5'C6'C7H20126.4°117.9°
N5'C6'C7O9'55.1°89.6°
N5'C6'C7N8'60.5°30.7°
C6'N5'C4AH22121.2°179.5°
C6'N5'C4AC4'170.8°173.1°
C6'N5'C4AC4B23.8°6.4°
N5'C6'C7H21179.8°149.9°
C6'C7O9'N8'116.1°124.2°
C6'C7O9'H21123.2°120.6°
C6'C7N8'H21118.2°119.8°
C7C6'N5'C4A52.3°22.8°
C6'C7N8'C4B47.3°26.0°
C7C6'N5'H2268.9°157.7°
C6'C7N8'H2574.2°153.8°
O9'C7N8'H21121.8°115.8°
O9'C7N8'C4B72.8°98.4°
C7O9'C9'H1777.0°109.6°
O9'C7C6'H20178.5°152.5°
O9'C7N8'H25165.7°81.8°
C7N8'C4BC4A19.9°9.7°
C7N8'C4BH25121.5°179.8°
C7N8'C4BN1'172.3°168.1°
N8'C7C6'H2065.9°87.3°
N5'C4AC4'C4B164.6°179.5°
N5'C4AC4BN8'5.4°1.7°
N5'C4AC4BN1'173.5°179.4°
N5'C4AC4'N3'179.2°179.7°
N5'C4AC4'O4'10.6°0.4°
C4AN5'C6'H2073.6°94.2°
C4'C4AC4BN8'172.8°178.8°
C4'C4AC4BN1'19.2°1.1°
C4AC4'N3'C2'19.7°0.4°
C4AC4'N3'O4'164.9°179.3°
C4'C4AN5'H2267.9°6.4°
C4AC4'N3'H30160.3°179.8°
C4AC4BN8'N1'167.8°177.9°
C4AC4BN1'C2'22.9°1.3°
C4BC4AC4'N3'16.3°0.2°
C4BC4AC4'O4'175.2°179.1°
C4BC4AN5'H2297.5°174.1°
C4AC4BN8'H25101.6°170.1°
N8'C4BN1'C2'168.3°179.1°
C4BN8'C7H21165.5°145.8°
C4BN1'C2'N3'23.2°0.6°
C4BN1'C2'N2'179.1°179.4°
N1'C4BN8'H2566.2°12.1°
N1'C2'N3'N2'157.1°179.9°
N1'C2'N3'C4'22.6°0.2°
N1'C2'N2'H290.0°0.0°
N1'C2'N3'H30157.5°180.0°
N1'C2'N2'H28180.0°180.0°
C2'N3'C4'H30180.0°179.8°
C2'N3'C4'O4'175.4°179.7°
N3'C2'N2'H29155.0°179.9°
N3'C2'N2'H2825.0°0.1°
N2'C2'N3'C4'179.7°179.7°
C2'N2'H29H28180.0°180.0°
N2'C2'N3'H300.3°0.0°
O4'C4'N3'H304.6°0.5°
O1MOO21S94.0°90.1°
O1MOO21H1894.0°133.3°
SMOO21H180.0°43.2°
H1C5C6H27.3°0.3°
H5C1'C2DH693.1°111.9°
H6C2DO2'H756.3°51.3°
H6C2DC3'H840.1°26.9°
H8C3'C4DH9163.3°159.4°
H8C3'O3'H1057.5°48.1°
H9C4DC5'H1181.9°71.2°
H9C4DC5'H1236.8°170.3°
H15C10C9'H17175.3°88.3°
H16C10C9'H1756.5°153.5°
H20C6'C7H2153.4°32.0°
H20C6'N5'H22165.2°85.3°
H21C7N8'H2544.0°34.0°

259693

PDB entries from 2026-09-16

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