F5H

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O2P	P	doub	1.48Å	1.48Å
O6'	P	sing	1.61Å	1.55Å
P	O1P	sing	1.61Å	1.51Å
P	O3P	sing	1.61Å	1.60Å
C2	N1	sing	1.35Å	1.36Å
C6	N1	sing	1.37Å	1.38Å
N1	C2'	sing	1.47Å	1.48Å
N3	C2	sing	1.35Å	1.33Å
C2	O2	doub	1.22Å	1.22Å
C4	N3	sing	1.35Å	1.36Å
N3	HN3	sing	0.97Å	1.00Å
O4	C4	doub	1.22Å	1.35Å
C4	C5	sing	1.42Å	1.42Å
C7	C5	sing	1.51Å	1.50Å
C5	C6	doub	1.35Å	1.37Å
C6	H6	sing	1.08Å	1.08Å
C7	H7	sing	1.09Å	1.10Å
C7	H7A	sing	1.09Å	1.10Å
C7	H7B	sing	1.09Å	1.10Å
C2'	C1'	sing	1.53Å	1.57Å
C1'	O5'	sing	1.43Å	1.41Å
C1'	H1'	sing	1.09Å	1.10Å
C1'	H1'A	sing	1.09Å	1.10Å
O1P	HO1P	sing	0.97Å	0.95Å
C3'	C2'	sing	1.53Å	1.56Å
C2'	H2'	sing	1.09Å	1.10Å
C3'	C4'	sing	1.53Å	1.55Å
C3'	F3'	sing	1.40Å	1.36Å
C3'	H3'	sing	1.09Å	1.10Å
O3P	HO3P	sing	0.97Å	0.95Å
O4'	C4'	sing	1.43Å	1.45Å
C4'	C5'	sing	1.53Å	1.52Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	HO4'	sing	0.97Å	0.95Å
C5'	O5'	sing	1.43Å	1.45Å
C5'	C6'	sing	1.53Å	1.53Å
C5'	H5'	sing	1.09Å	1.10Å
O6'	C6'	sing	1.43Å	1.44Å
C6'	C7'	sing	1.53Å	1.54Å
C6'	H6'	sing	1.09Å	1.10Å
C7'	H7'	sing	1.09Å	1.10Å
C7'	H7'A	sing	1.09Å	1.10Å
C7'	H7'B	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O2P	P	O6'	106.1°	109.5°
O2P	P	O1P	121.3°	109.5°
O2P	P	O3P	108.2°	109.5°
O6'	P	O1P	109.2°	109.4°
O6'	P	O3P	107.1°	109.5°
P	O6'	C6'	123.3°	123.0°
O1P	P	O3P	104.2°	109.5°
P	O1P	HO1P	109.5°	114.0°
P	O3P	HO3P	109.5°	114.0°
C2	N1	C6	120.3°	120.6°
C2	N1	C2'	117.6°	119.7°
N1	C2	N3	119.8°	121.0°
N1	C2	O2	122.5°	119.5°
C6	N1	C2'	122.0°	119.7°
N1	C6	C5	122.7°	119.7°
N1	C6	H6	118.6°	120.1°
N1	C2'	C1'	115.0°	109.5°
N1	C2'	C3'	108.0°	109.5°
N1	C2'	H2'	108.3°	109.5°
N3	C2	O2	117.7°	119.5°
C2	N3	C4	120.6°	120.2°
C2	N3	HN3	119.7°	119.9°
C4	N3	HN3	119.7°	119.9°
N3	C4	O4	116.1°	120.3°
N3	C4	C5	122.5°	119.4°
O4	C4	C5	121.4°	120.3°
C4	C5	C7	123.0°	120.4°
C4	C5	C6	114.0°	119.1°
C7	C5	C6	123.0°	120.4°
C5	C7	H7	109.5°	109.5°
C5	C7	H7A	109.5°	109.5°
C5	C7	H7B	109.4°	109.4°
C5	C6	H6	118.6°	120.2°
H7	C7	H7A	109.5°	109.5°
H7	C7	H7B	109.5°	109.5°
H7A	C7	H7B	109.5°	109.5°
C2'	C1'	O5'	107.6°	109.4°
C2'	C1'	H1'	110.0°	109.5°
C2'	C1'	H1'A	109.9°	109.4°
C1'	C2'	C3'	110.8°	109.2°
C1'	C2'	H2'	107.2°	109.5°
O5'	C1'	H1'	110.0°	109.5°
O5'	C1'	H1'A	109.9°	109.5°
C1'	O5'	C5'	119.4°	114.1°
H1'	C1'	H1'A	109.5°	109.5°
C3'	C2'	H2'	107.3°	109.6°
C2'	C3'	C4'	112.7°	109.1°
C2'	C3'	F3'	105.8°	109.5°
C2'	C3'	H3'	108.3°	109.5°
C4'	C3'	F3'	110.5°	109.6°
C4'	C3'	H3'	108.4°	109.6°
C3'	C4'	O4'	110.2°	109.5°
C3'	C4'	C5'	107.8°	109.2°
C3'	C4'	H4'	111.0°	109.6°
F3'	C3'	H3'	111.1°	109.6°
O4'	C4'	C5'	103.5°	109.5°
O4'	C4'	H4'	112.6°	109.5°
C4'	O4'	HO4'	109.5°	114.0°
C5'	C4'	H4'	111.5°	109.5°
C4'	C5'	O5'	109.3°	109.4°
C4'	C5'	C6'	113.5°	109.5°
C4'	C5'	H5'	108.7°	109.5°
O5'	C5'	C6'	107.3°	109.5°
O5'	C5'	H5'	109.6°	109.5°
C6'	C5'	H5'	108.5°	109.5°
C5'	C6'	O6'	104.9°	109.5°
C5'	C6'	C7'	112.7°	109.5°
C5'	C6'	H6'	107.2°	109.4°
O6'	C6'	C7'	116.3°	109.5°
O6'	C6'	H6'	108.2°	109.5°
C7'	C6'	H6'	107.1°	109.5°
C6'	C7'	H7'	109.5°	109.5°
C6'	C7'	H7'A	109.5°	109.4°
C6'	C7'	H7'B	109.5°	109.5°
H7'	C7'	H7'A	109.4°	109.5°
H7'	C7'	H7'B	109.5°	109.5°
H7'A	C7'	H7'B	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O2P	P	O6'	O1P	132.4°	120.0°
O2P	P	O6'	O3P	115.4°	120.0°
O2P	P	O1P	O3P	122.1°	120.0°
O2P	P	O1P	HO1P	0.0°	60.0°
O2P	P	O3P	HO3P	0.0°	180.0°
O2P	P	O6'	C6'	160.2°	55.1°
O6'	P	O1P	O3P	114.2°	120.0°
O6'	P	O1P	HO1P	123.8°	180.0°
O6'	P	O3P	HO3P	114.0°	60.0°
P	O6'	C6'	C5'	176.5°	120.0°
P	O6'	C6'	C7'	51.2°	120.0°
P	O6'	C6'	H6'	69.3°	0.1°
O1P	P	O3P	HO3P	130.4°	60.0°
O1P	P	O6'	C6'	27.9°	175.1°
O3P	P	O1P	HO1P	122.0°	60.0°
O3P	P	O6'	C6'	84.4°	65.0°
C2	N1	C6	C2'	176.7°	179.8°
N1	C2	N3	O2	179.5°	179.9°
N1	C2	N3	C4	1.6°	0.0°
N1	C2	N3	HN3	178.4°	180.0°
C2	N1	C6	C5	0.5°	0.5°
C2	N1	C6	H6	179.5°	180.0°
C2	N1	C2'	C1'	137.4°	176.5°
C2	N1	C2'	C3'	98.3°	63.8°
C2	N1	C2'	H2'	17.6°	56.4°
C6	N1	C2	N3	1.8°	0.2°
C6	N1	C2	O2	178.7°	179.7°
N1	C6	C5	C4	1.0°	0.5°
N1	C6	C5	C7	179.1°	179.8°
N1	C6	C5	H6	180.0°	179.5°
C6	N1	C2'	C1'	45.7°	3.3°
C6	N1	C2'	C3'	78.5°	116.4°
C6	N1	C2'	H2'	165.6°	123.4°
C2'	N1	C2	N3	178.7°	180.0°
C2'	N1	C2	O2	1.8°	0.1°
C2'	N1	C6	C5	177.3°	179.7°
C2'	N1	C6	H6	2.8°	0.2°
N1	C2'	C1'	C3'	122.8°	119.9°
N1	C2'	C1'	H2'	120.4°	120.1°
N1	C2'	C1'	O5'	72.8°	62.3°
N1	C2'	C1'	H1'	46.9°	57.6°
N1	C2'	C1'	H1'A	167.5°	177.7°
N1	C2'	C3'	H2'	116.5°	120.1°
N1	C2'	C3'	C4'	74.6°	62.9°
N1	C2'	C3'	F3'	164.5°	177.2°
N1	C2'	C3'	H3'	45.3°	57.0°
C2	N3	C4	HN3	180.0°	179.9°
C2	N3	C4	O4	179.3°	180.0°
C2	N3	C4	C5	0.0°	0.0°
O2	C2	N3	C4	178.9°	179.9°
O2	C2	N3	HN3	1.1°	0.1°
N3	C4	O4	C5	179.3°	180.0°
N3	C4	C5	C7	179.3°	180.0°
N3	C4	C5	C6	1.2°	0.3°
HN3	N3	C4	O4	0.7°	0.1°
HN3	N3	C4	C5	180.0°	179.9°
O4	C4	C5	C7	1.4°	0.0°
O4	C4	C5	C6	179.5°	179.7°
C4	C5	C7	C6	177.9°	179.7°
C4	C5	C6	H6	179.0°	179.9°
C4	C5	C7	H7	180.0°	0.1°
C4	C5	C7	H7A	60.0°	119.9°
C4	C5	C7	H7B	60.0°	120.0°
C7	C5	C6	H6	0.9°	0.3°
C5	C7	H7	H7A	120.0°	120.0°
C5	C7	H7	H7B	120.0°	119.9°
C5	C7	H7A	H7B	120.0°	120.0°
C6	C5	C7	H7	2.1°	179.7°
C6	C5	C7	H7A	122.1°	59.7°
C6	C5	C7	H7B	118.0°	60.3°
H7	C7	H7A	H7B	120.0°	120.0°
C2'	C1'	O5'	H1'	119.7°	120.0°
C2'	C1'	O5'	H1'A	119.7°	119.9°
C2'	C1'	H1'	H1'A	120.9°	120.0°
C1'	C2'	C3'	H2'	116.7°	120.0°
C1'	C2'	C3'	C4'	52.1°	57.0°
C1'	C2'	C3'	F3'	68.7°	63.0°
C1'	C2'	C3'	H3'	172.0°	176.9°
C2'	C1'	O5'	C5'	58.4°	61.1°
O5'	C1'	H1'	H1'A	120.9°	120.1°
O5'	C1'	C2'	C3'	49.9°	57.6°
O5'	C1'	C2'	H2'	166.7°	177.6°
C1'	O5'	C5'	C4'	63.0°	61.1°
C1'	O5'	C5'	C6'	173.6°	178.8°
C1'	O5'	C5'	H5'	56.0°	58.8°
H1'	C1'	C2'	C3'	169.7°	177.5°
H1'	C1'	C2'	H2'	73.5°	62.4°
H1'	C1'	O5'	C5'	178.1°	178.9°
H1'A	C1'	C2'	C3'	69.8°	62.4°
H1'A	C1'	C2'	H2'	47.0°	57.6°
H1'A	C1'	O5'	C5'	61.4°	58.8°
C2'	C3'	C4'	F3'	118.1°	119.9°
C2'	C3'	C4'	H3'	119.9°	119.9°
C2'	C3'	F3'	H3'	117.4°	120.1°
C2'	C3'	C4'	O4'	166.4°	176.9°
C2'	C3'	C4'	C5'	54.2°	57.0°
C2'	C3'	C4'	H4'	68.1°	62.9°
H2'	C2'	C3'	C4'	168.9°	177.0°
H2'	C2'	C3'	F3'	48.0°	57.0°
H2'	C2'	C3'	H3'	71.3°	63.1°
C4'	C3'	F3'	H3'	120.4°	120.3°
C3'	C4'	O4'	C5'	115.0°	119.7°
C3'	C4'	O4'	H4'	124.5°	120.2°
C3'	C4'	C5'	H4'	122.0°	119.9°
C3'	C4'	O4'	HO4'	180.0°	60.0°
C3'	C4'	C5'	O5'	55.0°	57.6°
C3'	C4'	C5'	C6'	174.7°	177.6°
C3'	C4'	C5'	H5'	64.5°	62.3°
F3'	C3'	C4'	O4'	48.2°	57.0°
F3'	C3'	C4'	C5'	64.0°	62.9°
F3'	C3'	C4'	H4'	173.7°	177.2°
H3'	C3'	C4'	O4'	73.7°	63.2°
H3'	C3'	C4'	C5'	174.0°	176.9°
H3'	C3'	C4'	H4'	51.7°	56.9°
O4'	C4'	C5'	H4'	121.3°	120.1°
O4'	C4'	C5'	O5'	171.7°	177.5°
O4'	C4'	C5'	C6'	68.6°	62.5°
O4'	C4'	C5'	H5'	52.2°	57.6°
C5'	C4'	O4'	HO4'	65.0°	179.7°
C4'	C5'	O5'	C6'	123.4°	120.0°
C4'	C5'	O5'	H5'	119.0°	120.0°
C4'	C5'	C6'	H5'	120.9°	120.1°
C4'	C5'	C6'	O6'	61.0°	58.8°
C4'	C5'	C6'	C7'	171.5°	178.9°
C4'	C5'	C6'	H6'	53.9°	61.1°
H4'	C4'	O4'	HO4'	55.5°	60.2°
H4'	C4'	C5'	O5'	67.0°	62.4°
H4'	C4'	C5'	C6'	52.7°	57.6°
H4'	C4'	C5'	H5'	173.5°	177.7°
O5'	C5'	C6'	H5'	118.3°	120.0°
O5'	C5'	C6'	O6'	59.8°	61.1°
O5'	C5'	C6'	C7'	67.7°	59.0°
O5'	C5'	C6'	H6'	174.7°	179.0°
C5'	C6'	O6'	C7'	125.3°	120.0°
C5'	C6'	O6'	H6'	114.2°	119.9°
C5'	C6'	C7'	H6'	117.6°	119.9°
C5'	C6'	C7'	H7'	180.0°	60.0°
C5'	C6'	C7'	H7'A	60.0°	180.0°
C5'	C6'	C7'	H7'B	60.0°	60.1°
H5'	C5'	C6'	O6'	178.1°	178.9°
H5'	C5'	C6'	C7'	50.6°	61.0°
H5'	C5'	C6'	H6'	67.0°	59.0°
O6'	C6'	C7'	H6'	121.1°	120.0°
O6'	C6'	C7'	H7'	58.7°	180.0°
O6'	C6'	C7'	H7'A	61.2°	60.0°
O6'	C6'	C7'	H7'B	178.8°	60.0°
C6'	C7'	H7'	H7'A	120.0°	120.0°
C6'	C7'	H7'	H7'B	120.0°	120.0°
C6'	C7'	H7'A	H7'B	120.0°	120.0°
H6'	C6'	C7'	H7'	62.4°	60.0°
H6'	C6'	C7'	H7'A	177.7°	60.0°
H6'	C6'	C7'	H7'B	57.6°	180.0°
H7'	C7'	H7'A	H7'B	120.0°	120.0°

Definition date:	2012-01-11
Last modified:	2012-02-03
Release status:	REL
Processing site:	RCSB
Derived from:	3V06