F5H
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O2P | P | doub | 1.48Å | 1.48Å | |
O6' | P | sing | 1.61Å | 1.55Å | |
P | O1P | sing | 1.61Å | 1.51Å | |
P | O3P | sing | 1.61Å | 1.60Å | |
C2 | N1 | sing | 1.35Å | 1.36Å | |
C6 | N1 | sing | 1.37Å | 1.38Å | |
N1 | C2' | sing | 1.47Å | 1.48Å | |
N3 | C2 | sing | 1.35Å | 1.33Å | |
C2 | O2 | doub | 1.22Å | 1.22Å | |
C4 | N3 | sing | 1.35Å | 1.36Å | |
N3 | HN3 | sing | 0.97Å | 1.00Å | |
O4 | C4 | doub | 1.22Å | 1.35Å | |
C4 | C5 | sing | 1.42Å | 1.42Å | |
C7 | C5 | sing | 1.51Å | 1.50Å | |
C5 | C6 | doub | 1.35Å | 1.37Å | |
C6 | H6 | sing | 1.08Å | 1.08Å | |
C7 | H7 | sing | 1.09Å | 1.10Å | |
C7 | H7A | sing | 1.09Å | 1.10Å | |
C7 | H7B | sing | 1.09Å | 1.10Å | |
C2' | C1' | sing | 1.53Å | 1.57Å | |
C1' | O5' | sing | 1.43Å | 1.41Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C1' | H1'A | sing | 1.09Å | 1.10Å | |
O1P | HO1P | sing | 0.97Å | 0.95Å | |
C3' | C2' | sing | 1.53Å | 1.56Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C3' | C4' | sing | 1.53Å | 1.55Å | |
C3' | F3' | sing | 1.40Å | 1.36Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3P | HO3P | sing | 0.97Å | 0.95Å | |
O4' | C4' | sing | 1.43Å | 1.45Å | |
C4' | C5' | sing | 1.53Å | 1.52Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O4' | HO4' | sing | 0.97Å | 0.95Å | |
C5' | O5' | sing | 1.43Å | 1.45Å | |
C5' | C6' | sing | 1.53Å | 1.53Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
O6' | C6' | sing | 1.43Å | 1.44Å | |
C6' | C7' | sing | 1.53Å | 1.54Å | |
C6' | H6' | sing | 1.09Å | 1.10Å | |
C7' | H7' | sing | 1.09Å | 1.10Å | |
C7' | H7'A | sing | 1.09Å | 1.10Å | |
C7' | H7'B | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O2P | P | O6' | 106.1° | 109.5° |
O2P | P | O1P | 121.3° | 109.5° |
O2P | P | O3P | 108.2° | 109.5° |
O6' | P | O1P | 109.2° | 109.4° |
O6' | P | O3P | 107.1° | 109.5° |
P | O6' | C6' | 123.3° | 123.0° |
O1P | P | O3P | 104.2° | 109.5° |
P | O1P | HO1P | 109.5° | 114.0° |
P | O3P | HO3P | 109.5° | 114.0° |
C2 | N1 | C6 | 120.3° | 120.6° |
C2 | N1 | C2' | 117.6° | 119.7° |
N1 | C2 | N3 | 119.8° | 121.0° |
N1 | C2 | O2 | 122.5° | 119.5° |
C6 | N1 | C2' | 122.0° | 119.7° |
N1 | C6 | C5 | 122.7° | 119.7° |
N1 | C6 | H6 | 118.6° | 120.1° |
N1 | C2' | C1' | 115.0° | 109.5° |
N1 | C2' | C3' | 108.0° | 109.5° |
N1 | C2' | H2' | 108.3° | 109.5° |
N3 | C2 | O2 | 117.7° | 119.5° |
C2 | N3 | C4 | 120.6° | 120.2° |
C2 | N3 | HN3 | 119.7° | 119.9° |
C4 | N3 | HN3 | 119.7° | 119.9° |
N3 | C4 | O4 | 116.1° | 120.3° |
N3 | C4 | C5 | 122.5° | 119.4° |
O4 | C4 | C5 | 121.4° | 120.3° |
C4 | C5 | C7 | 123.0° | 120.4° |
C4 | C5 | C6 | 114.0° | 119.1° |
C7 | C5 | C6 | 123.0° | 120.4° |
C5 | C7 | H7 | 109.5° | 109.5° |
C5 | C7 | H7A | 109.5° | 109.5° |
C5 | C7 | H7B | 109.4° | 109.4° |
C5 | C6 | H6 | 118.6° | 120.2° |
H7 | C7 | H7A | 109.5° | 109.5° |
H7 | C7 | H7B | 109.5° | 109.5° |
H7A | C7 | H7B | 109.5° | 109.5° |
C2' | C1' | O5' | 107.6° | 109.4° |
C2' | C1' | H1' | 110.0° | 109.5° |
C2' | C1' | H1'A | 109.9° | 109.4° |
C1' | C2' | C3' | 110.8° | 109.2° |
C1' | C2' | H2' | 107.2° | 109.5° |
O5' | C1' | H1' | 110.0° | 109.5° |
O5' | C1' | H1'A | 109.9° | 109.5° |
C1' | O5' | C5' | 119.4° | 114.1° |
H1' | C1' | H1'A | 109.5° | 109.5° |
C3' | C2' | H2' | 107.3° | 109.6° |
C2' | C3' | C4' | 112.7° | 109.1° |
C2' | C3' | F3' | 105.8° | 109.5° |
C2' | C3' | H3' | 108.3° | 109.5° |
C4' | C3' | F3' | 110.5° | 109.6° |
C4' | C3' | H3' | 108.4° | 109.6° |
C3' | C4' | O4' | 110.2° | 109.5° |
C3' | C4' | C5' | 107.8° | 109.2° |
C3' | C4' | H4' | 111.0° | 109.6° |
F3' | C3' | H3' | 111.1° | 109.6° |
O4' | C4' | C5' | 103.5° | 109.5° |
O4' | C4' | H4' | 112.6° | 109.5° |
C4' | O4' | HO4' | 109.5° | 114.0° |
C5' | C4' | H4' | 111.5° | 109.5° |
C4' | C5' | O5' | 109.3° | 109.4° |
C4' | C5' | C6' | 113.5° | 109.5° |
C4' | C5' | H5' | 108.7° | 109.5° |
O5' | C5' | C6' | 107.3° | 109.5° |
O5' | C5' | H5' | 109.6° | 109.5° |
C6' | C5' | H5' | 108.5° | 109.5° |
C5' | C6' | O6' | 104.9° | 109.5° |
C5' | C6' | C7' | 112.7° | 109.5° |
C5' | C6' | H6' | 107.2° | 109.4° |
O6' | C6' | C7' | 116.3° | 109.5° |
O6' | C6' | H6' | 108.2° | 109.5° |
C7' | C6' | H6' | 107.1° | 109.5° |
C6' | C7' | H7' | 109.5° | 109.5° |
C6' | C7' | H7'A | 109.5° | 109.4° |
C6' | C7' | H7'B | 109.5° | 109.5° |
H7' | C7' | H7'A | 109.4° | 109.5° |
H7' | C7' | H7'B | 109.5° | 109.5° |
H7'A | C7' | H7'B | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O2P | P | O6' | O1P | 132.4° | 120.0° |
O2P | P | O6' | O3P | 115.4° | 120.0° |
O2P | P | O1P | O3P | 122.1° | 120.0° |
O2P | P | O1P | HO1P | 0.0° | 60.0° |
O2P | P | O3P | HO3P | 0.0° | 180.0° |
O2P | P | O6' | C6' | 160.2° | 55.1° |
O6' | P | O1P | O3P | 114.2° | 120.0° |
O6' | P | O1P | HO1P | 123.8° | 180.0° |
O6' | P | O3P | HO3P | 114.0° | 60.0° |
P | O6' | C6' | C5' | 176.5° | 120.0° |
P | O6' | C6' | C7' | 51.2° | 120.0° |
P | O6' | C6' | H6' | 69.3° | 0.1° |
O1P | P | O3P | HO3P | 130.4° | 60.0° |
O1P | P | O6' | C6' | 27.9° | 175.1° |
O3P | P | O1P | HO1P | 122.0° | 60.0° |
O3P | P | O6' | C6' | 84.4° | 65.0° |
C2 | N1 | C6 | C2' | 176.7° | 179.8° |
N1 | C2 | N3 | O2 | 179.5° | 179.9° |
N1 | C2 | N3 | C4 | 1.6° | 0.0° |
N1 | C2 | N3 | HN3 | 178.4° | 180.0° |
C2 | N1 | C6 | C5 | 0.5° | 0.5° |
C2 | N1 | C6 | H6 | 179.5° | 180.0° |
C2 | N1 | C2' | C1' | 137.4° | 176.5° |
C2 | N1 | C2' | C3' | 98.3° | 63.8° |
C2 | N1 | C2' | H2' | 17.6° | 56.4° |
C6 | N1 | C2 | N3 | 1.8° | 0.2° |
C6 | N1 | C2 | O2 | 178.7° | 179.7° |
N1 | C6 | C5 | C4 | 1.0° | 0.5° |
N1 | C6 | C5 | C7 | 179.1° | 179.8° |
N1 | C6 | C5 | H6 | 180.0° | 179.5° |
C6 | N1 | C2' | C1' | 45.7° | 3.3° |
C6 | N1 | C2' | C3' | 78.5° | 116.4° |
C6 | N1 | C2' | H2' | 165.6° | 123.4° |
C2' | N1 | C2 | N3 | 178.7° | 180.0° |
C2' | N1 | C2 | O2 | 1.8° | 0.1° |
C2' | N1 | C6 | C5 | 177.3° | 179.7° |
C2' | N1 | C6 | H6 | 2.8° | 0.2° |
N1 | C2' | C1' | C3' | 122.8° | 119.9° |
N1 | C2' | C1' | H2' | 120.4° | 120.1° |
N1 | C2' | C1' | O5' | 72.8° | 62.3° |
N1 | C2' | C1' | H1' | 46.9° | 57.6° |
N1 | C2' | C1' | H1'A | 167.5° | 177.7° |
N1 | C2' | C3' | H2' | 116.5° | 120.1° |
N1 | C2' | C3' | C4' | 74.6° | 62.9° |
N1 | C2' | C3' | F3' | 164.5° | 177.2° |
N1 | C2' | C3' | H3' | 45.3° | 57.0° |
C2 | N3 | C4 | HN3 | 180.0° | 179.9° |
C2 | N3 | C4 | O4 | 179.3° | 180.0° |
C2 | N3 | C4 | C5 | 0.0° | 0.0° |
O2 | C2 | N3 | C4 | 178.9° | 179.9° |
O2 | C2 | N3 | HN3 | 1.1° | 0.1° |
N3 | C4 | O4 | C5 | 179.3° | 180.0° |
N3 | C4 | C5 | C7 | 179.3° | 180.0° |
N3 | C4 | C5 | C6 | 1.2° | 0.3° |
HN3 | N3 | C4 | O4 | 0.7° | 0.1° |
HN3 | N3 | C4 | C5 | 180.0° | 179.9° |
O4 | C4 | C5 | C7 | 1.4° | 0.0° |
O4 | C4 | C5 | C6 | 179.5° | 179.7° |
C4 | C5 | C7 | C6 | 177.9° | 179.7° |
C4 | C5 | C6 | H6 | 179.0° | 179.9° |
C4 | C5 | C7 | H7 | 180.0° | 0.1° |
C4 | C5 | C7 | H7A | 60.0° | 119.9° |
C4 | C5 | C7 | H7B | 60.0° | 120.0° |
C7 | C5 | C6 | H6 | 0.9° | 0.3° |
C5 | C7 | H7 | H7A | 120.0° | 120.0° |
C5 | C7 | H7 | H7B | 120.0° | 119.9° |
C5 | C7 | H7A | H7B | 120.0° | 120.0° |
C6 | C5 | C7 | H7 | 2.1° | 179.7° |
C6 | C5 | C7 | H7A | 122.1° | 59.7° |
C6 | C5 | C7 | H7B | 118.0° | 60.3° |
H7 | C7 | H7A | H7B | 120.0° | 120.0° |
C2' | C1' | O5' | H1' | 119.7° | 120.0° |
C2' | C1' | O5' | H1'A | 119.7° | 119.9° |
C2' | C1' | H1' | H1'A | 120.9° | 120.0° |
C1' | C2' | C3' | H2' | 116.7° | 120.0° |
C1' | C2' | C3' | C4' | 52.1° | 57.0° |
C1' | C2' | C3' | F3' | 68.7° | 63.0° |
C1' | C2' | C3' | H3' | 172.0° | 176.9° |
C2' | C1' | O5' | C5' | 58.4° | 61.1° |
O5' | C1' | H1' | H1'A | 120.9° | 120.1° |
O5' | C1' | C2' | C3' | 49.9° | 57.6° |
O5' | C1' | C2' | H2' | 166.7° | 177.6° |
C1' | O5' | C5' | C4' | 63.0° | 61.1° |
C1' | O5' | C5' | C6' | 173.6° | 178.8° |
C1' | O5' | C5' | H5' | 56.0° | 58.8° |
H1' | C1' | C2' | C3' | 169.7° | 177.5° |
H1' | C1' | C2' | H2' | 73.5° | 62.4° |
H1' | C1' | O5' | C5' | 178.1° | 178.9° |
H1'A | C1' | C2' | C3' | 69.8° | 62.4° |
H1'A | C1' | C2' | H2' | 47.0° | 57.6° |
H1'A | C1' | O5' | C5' | 61.4° | 58.8° |
C2' | C3' | C4' | F3' | 118.1° | 119.9° |
C2' | C3' | C4' | H3' | 119.9° | 119.9° |
C2' | C3' | F3' | H3' | 117.4° | 120.1° |
C2' | C3' | C4' | O4' | 166.4° | 176.9° |
C2' | C3' | C4' | C5' | 54.2° | 57.0° |
C2' | C3' | C4' | H4' | 68.1° | 62.9° |
H2' | C2' | C3' | C4' | 168.9° | 177.0° |
H2' | C2' | C3' | F3' | 48.0° | 57.0° |
H2' | C2' | C3' | H3' | 71.3° | 63.1° |
C4' | C3' | F3' | H3' | 120.4° | 120.3° |
C3' | C4' | O4' | C5' | 115.0° | 119.7° |
C3' | C4' | O4' | H4' | 124.5° | 120.2° |
C3' | C4' | C5' | H4' | 122.0° | 119.9° |
C3' | C4' | O4' | HO4' | 180.0° | 60.0° |
C3' | C4' | C5' | O5' | 55.0° | 57.6° |
C3' | C4' | C5' | C6' | 174.7° | 177.6° |
C3' | C4' | C5' | H5' | 64.5° | 62.3° |
F3' | C3' | C4' | O4' | 48.2° | 57.0° |
F3' | C3' | C4' | C5' | 64.0° | 62.9° |
F3' | C3' | C4' | H4' | 173.7° | 177.2° |
H3' | C3' | C4' | O4' | 73.7° | 63.2° |
H3' | C3' | C4' | C5' | 174.0° | 176.9° |
H3' | C3' | C4' | H4' | 51.7° | 56.9° |
O4' | C4' | C5' | H4' | 121.3° | 120.1° |
O4' | C4' | C5' | O5' | 171.7° | 177.5° |
O4' | C4' | C5' | C6' | 68.6° | 62.5° |
O4' | C4' | C5' | H5' | 52.2° | 57.6° |
C5' | C4' | O4' | HO4' | 65.0° | 179.7° |
C4' | C5' | O5' | C6' | 123.4° | 120.0° |
C4' | C5' | O5' | H5' | 119.0° | 120.0° |
C4' | C5' | C6' | H5' | 120.9° | 120.1° |
C4' | C5' | C6' | O6' | 61.0° | 58.8° |
C4' | C5' | C6' | C7' | 171.5° | 178.9° |
C4' | C5' | C6' | H6' | 53.9° | 61.1° |
H4' | C4' | O4' | HO4' | 55.5° | 60.2° |
H4' | C4' | C5' | O5' | 67.0° | 62.4° |
H4' | C4' | C5' | C6' | 52.7° | 57.6° |
H4' | C4' | C5' | H5' | 173.5° | 177.7° |
O5' | C5' | C6' | H5' | 118.3° | 120.0° |
O5' | C5' | C6' | O6' | 59.8° | 61.1° |
O5' | C5' | C6' | C7' | 67.7° | 59.0° |
O5' | C5' | C6' | H6' | 174.7° | 179.0° |
C5' | C6' | O6' | C7' | 125.3° | 120.0° |
C5' | C6' | O6' | H6' | 114.2° | 119.9° |
C5' | C6' | C7' | H6' | 117.6° | 119.9° |
C5' | C6' | C7' | H7' | 180.0° | 60.0° |
C5' | C6' | C7' | H7'A | 60.0° | 180.0° |
C5' | C6' | C7' | H7'B | 60.0° | 60.1° |
H5' | C5' | C6' | O6' | 178.1° | 178.9° |
H5' | C5' | C6' | C7' | 50.6° | 61.0° |
H5' | C5' | C6' | H6' | 67.0° | 59.0° |
O6' | C6' | C7' | H6' | 121.1° | 120.0° |
O6' | C6' | C7' | H7' | 58.7° | 180.0° |
O6' | C6' | C7' | H7'A | 61.2° | 60.0° |
O6' | C6' | C7' | H7'B | 178.8° | 60.0° |
C6' | C7' | H7' | H7'A | 120.0° | 120.0° |
C6' | C7' | H7' | H7'B | 120.0° | 120.0° |
C6' | C7' | H7'A | H7'B | 120.0° | 120.0° |
H6' | C6' | C7' | H7' | 62.4° | 60.0° |
H6' | C6' | C7' | H7'A | 177.7° | 60.0° |
H6' | C6' | C7' | H7'B | 57.6° | 180.0° |
H7' | C7' | H7'A | H7'B | 120.0° | 120.0° |