F4H
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | O6' | sing | 1.61Å | 1.58Å | |
N1 | C2 | sing | 1.35Å | 1.41Å | |
N1 | C6 | sing | 1.37Å | 1.34Å | |
N1 | C2' | sing | 1.46Å | 1.47Å | |
C2 | O2 | doub | 1.22Å | 1.36Å | |
C2 | N3 | sing | 1.35Å | 1.34Å | |
N3 | C4 | sing | 1.35Å | 1.34Å | |
N3 | HN3 | sing | 0.97Å | 1.00Å | |
C4 | O4 | doub | 1.22Å | 1.36Å | |
C4 | C5 | sing | 1.42Å | 1.39Å | |
C5 | C6 | doub | 1.35Å | 1.39Å | |
C5 | C5M | sing | 1.51Å | 1.49Å | |
C6 | H6 | sing | 1.08Å | 1.08Å | |
C1' | C2' | sing | 1.53Å | 1.51Å | |
C1' | O5' | sing | 1.43Å | 1.43Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C1' | H1'A | sing | 1.09Å | 1.10Å | |
C2' | C3' | sing | 1.53Å | 1.52Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C3' | F3' | sing | 1.40Å | 1.39Å | |
C3' | C4' | sing | 1.53Å | 1.54Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
C4' | O4' | sing | 1.43Å | 1.43Å | |
C4' | C5' | sing | 1.53Å | 1.53Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O4' | HO4' | sing | 0.97Å | 0.95Å | |
C5' | O5' | sing | 1.43Å | 1.42Å | |
C5' | C6' | sing | 1.53Å | 1.53Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5M | H5M | sing | 1.09Å | 1.10Å | |
C5M | H5MA | sing | 1.09Å | 1.10Å | |
C5M | H5MB | sing | 1.09Å | 1.10Å | |
C6' | O6' | sing | 1.43Å | 1.42Å | |
C6' | H6' | sing | 1.09Å | 1.10Å | |
C6' | H6'A | sing | 1.09Å | 1.10Å | |
P | O1P | sing | 1.61Å | 1.63Å | |
P | O2P | doub | 1.48Å | 1.62Å | |
P | O3P | sing | 1.61Å | 1.72Å | |
O1P | H15 | sing | 0.97Å | 0.95Å | |
O3P | H16 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
P | O6' | C6' | 121.3° | 123.0° |
O6' | P | O1P | 109.5° | 109.5° |
O6' | P | O2P | 109.5° | 109.5° |
O6' | P | O3P | 109.5° | 109.5° |
C2 | N1 | C6 | 120.1° | 120.6° |
C2 | N1 | C2' | 117.1° | 119.7° |
N1 | C2 | O2 | 119.7° | 119.5° |
N1 | C2 | N3 | 120.9° | 121.0° |
C6 | N1 | C2' | 122.7° | 119.7° |
N1 | C6 | C5 | 118.9° | 119.7° |
N1 | C6 | H6 | 120.6° | 120.1° |
N1 | C2' | C1' | 115.4° | 109.6° |
N1 | C2' | C3' | 109.4° | 109.5° |
N1 | C2' | H2' | 105.4° | 109.5° |
O2 | C2 | N3 | 119.4° | 119.5° |
C2 | N3 | C4 | 119.8° | 120.2° |
C2 | N3 | HN3 | 120.1° | 119.9° |
C4 | N3 | HN3 | 120.1° | 119.9° |
N3 | C4 | O4 | 117.9° | 120.3° |
N3 | C4 | C5 | 120.3° | 119.4° |
O4 | C4 | C5 | 121.7° | 120.3° |
C4 | C5 | C6 | 120.0° | 119.1° |
C4 | C5 | C5M | 120.6° | 120.4° |
C6 | C5 | C5M | 119.5° | 120.5° |
C5 | C6 | H6 | 120.6° | 120.2° |
C5 | C5M | H5M | 109.5° | 109.5° |
C5 | C5M | H5MA | 109.4° | 109.5° |
C5 | C5M | H5MB | 109.5° | 109.5° |
C2' | C1' | O5' | 111.2° | 109.4° |
C2' | C1' | H1' | 108.9° | 109.4° |
C2' | C1' | H1'A | 108.9° | 109.5° |
C1' | C2' | C3' | 109.3° | 109.2° |
C1' | C2' | H2' | 105.4° | 109.5° |
O5' | C1' | H1' | 108.9° | 109.5° |
O5' | C1' | H1'A | 108.9° | 109.5° |
C1' | O5' | C5' | 114.8° | 114.1° |
H1' | C1' | H1'A | 110.0° | 109.5° |
C3' | C2' | H2' | 111.9° | 109.5° |
C2' | C3' | F3' | 110.1° | 109.5° |
C2' | C3' | C4' | 111.3° | 109.0° |
C2' | C3' | H3' | 109.2° | 109.6° |
F3' | C3' | C4' | 113.5° | 109.5° |
F3' | C3' | H3' | 106.9° | 109.6° |
C4' | C3' | H3' | 105.5° | 109.6° |
C3' | C4' | O4' | 110.0° | 109.5° |
C3' | C4' | C5' | 110.7° | 109.1° |
C3' | C4' | H4' | 108.0° | 109.5° |
O4' | C4' | C5' | 108.7° | 109.5° |
O4' | C4' | H4' | 110.1° | 109.5° |
C4' | O4' | HO4' | 109.5° | 114.1° |
C5' | C4' | H4' | 109.4° | 109.5° |
C4' | C5' | O5' | 107.8° | 109.4° |
C4' | C5' | C6' | 111.5° | 109.5° |
C4' | C5' | H5' | 108.4° | 109.5° |
O5' | C5' | C6' | 106.8° | 109.5° |
O5' | C5' | H5' | 113.0° | 109.5° |
C6' | C5' | H5' | 109.4° | 109.5° |
C5' | C6' | O6' | 107.5° | 109.5° |
C5' | C6' | H6' | 110.1° | 109.5° |
C5' | C6' | H6'A | 110.1° | 109.5° |
H5M | C5M | H5MA | 109.5° | 109.5° |
H5M | C5M | H5MB | 109.5° | 109.4° |
H5MA | C5M | H5MB | 109.5° | 109.4° |
O6' | C6' | H6' | 110.2° | 109.5° |
O6' | C6' | H6'A | 110.2° | 109.5° |
H6' | C6' | H6'A | 108.8° | 109.4° |
O1P | P | O2P | 109.5° | 109.5° |
O1P | P | O3P | 109.5° | 109.5° |
P | O1P | H15 | 109.5° | 114.0° |
O2P | P | O3P | 109.5° | 109.5° |
P | O3P | H16 | 109.5° | 114.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
P | O6' | C6' | C5' | 152.3° | 180.0° |
P | O6' | C6' | H6' | 32.4° | 60.0° |
P | O6' | C6' | H6'A | 87.7° | 60.0° |
O6' | P | O1P | O2P | 120.0° | 120.0° |
O6' | P | O1P | O3P | 120.0° | 120.0° |
O6' | P | O2P | O3P | 120.0° | 120.0° |
O6' | P | O1P | H15 | 120.0° | 180.0° |
O6' | P | O3P | H16 | 120.0° | 59.9° |
C2 | N1 | C6 | C2' | 175.0° | 179.6° |
N1 | C2 | O2 | N3 | 178.5° | 179.9° |
N1 | C2 | N3 | C4 | 0.5° | 0.1° |
N1 | C2 | N3 | HN3 | 179.5° | 179.9° |
C2 | N1 | C6 | C5 | 2.9° | 0.0° |
C2 | N1 | C6 | H6 | 177.1° | 179.9° |
C2 | N1 | C2' | C1' | 141.3° | 127.3° |
C2 | N1 | C2' | C3' | 95.0° | 113.0° |
C2 | N1 | C2' | H2' | 25.5° | 7.1° |
C6 | N1 | C2 | O2 | 179.0° | 180.0° |
C6 | N1 | C2 | N3 | 2.5° | 0.1° |
N1 | C6 | C5 | C4 | 0.5° | 0.0° |
N1 | C6 | C5 | H6 | 180.0° | 180.0° |
N1 | C6 | C5 | C5M | 178.4° | 180.0° |
C6 | N1 | C2' | C1' | 43.6° | 52.4° |
C6 | N1 | C2' | C3' | 80.1° | 67.3° |
C6 | N1 | C2' | H2' | 159.4° | 172.5° |
C2' | N1 | C2 | O2 | 3.8° | 0.4° |
C2' | N1 | C2 | N3 | 177.7° | 179.7° |
C2' | N1 | C6 | C5 | 177.9° | 179.7° |
C2' | N1 | C6 | H6 | 2.1° | 0.3° |
N1 | C2' | C1' | C3' | 123.7° | 119.9° |
N1 | C2' | C1' | H2' | 115.8° | 120.1° |
N1 | C2' | C1' | O5' | 69.4° | 62.3° |
N1 | C2' | C1' | H1' | 50.7° | 57.7° |
N1 | C2' | C1' | H1'A | 170.7° | 177.7° |
N1 | C2' | C3' | H2' | 116.4° | 120.1° |
N1 | C2' | C3' | F3' | 51.4° | 56.9° |
N1 | C2' | C3' | C4' | 75.4° | 63.0° |
N1 | C2' | C3' | H3' | 168.5° | 177.1° |
O2 | C2 | N3 | C4 | 178.0° | 180.0° |
O2 | C2 | N3 | HN3 | 2.0° | 0.0° |
C2 | N3 | C4 | HN3 | 180.0° | 180.0° |
C2 | N3 | C4 | O4 | 177.8° | 180.0° |
C2 | N3 | C4 | C5 | 2.9° | 0.1° |
N3 | C4 | O4 | C5 | 174.8° | 180.0° |
N3 | C4 | C5 | C6 | 2.4° | 0.0° |
N3 | C4 | C5 | C5M | 178.7° | 180.0° |
HN3 | N3 | C4 | O4 | 2.2° | 0.0° |
HN3 | N3 | C4 | C5 | 177.1° | 180.0° |
O4 | C4 | C5 | C6 | 177.2° | 180.0° |
O4 | C4 | C5 | C5M | 4.0° | 0.0° |
C4 | C5 | C6 | C5M | 178.9° | 180.0° |
C4 | C5 | C6 | H6 | 179.5° | 180.0° |
C4 | C5 | C5M | H5M | 180.0° | 0.1° |
C4 | C5 | C5M | H5MA | 60.0° | 120.0° |
C4 | C5 | C5M | H5MB | 60.0° | 120.0° |
C6 | C5 | C5M | H5M | 1.1° | 179.9° |
C6 | C5 | C5M | H5MA | 121.1° | 60.0° |
C6 | C5 | C5M | H5MB | 118.9° | 60.0° |
C5M | C5 | C6 | H6 | 1.6° | 0.0° |
C5 | C5M | H5M | H5MA | 120.0° | 120.1° |
C5 | C5M | H5M | H5MB | 120.0° | 120.0° |
C5 | C5M | H5MA | H5MB | 120.0° | 120.0° |
C2' | C1' | O5' | H1' | 120.0° | 119.9° |
C2' | C1' | O5' | H1'A | 120.0° | 120.0° |
C2' | C1' | H1' | H1'A | 119.3° | 120.0° |
C1' | C2' | C3' | H2' | 116.4° | 119.9° |
C1' | C2' | C3' | F3' | 178.6° | 176.8° |
C1' | C2' | C3' | C4' | 51.7° | 57.0° |
C1' | C2' | C3' | H3' | 64.4° | 62.9° |
C2' | C1' | O5' | C5' | 61.9° | 61.2° |
O5' | C1' | H1' | H1'A | 119.2° | 120.1° |
O5' | C1' | C2' | C3' | 54.3° | 57.7° |
O5' | C1' | C2' | H2' | 174.8° | 177.6° |
C1' | O5' | C5' | C4' | 61.1° | 61.2° |
C1' | O5' | C5' | C6' | 179.0° | 178.9° |
C1' | O5' | C5' | H5' | 58.7° | 58.8° |
H1' | C1' | C2' | C3' | 174.3° | 177.6° |
H1' | C1' | C2' | H2' | 65.2° | 62.5° |
H1' | C1' | O5' | C5' | 178.1° | 178.9° |
H1'A | C1' | C2' | C3' | 65.7° | 62.4° |
H1'A | C1' | C2' | H2' | 54.8° | 57.5° |
H1'A | C1' | O5' | C5' | 58.1° | 58.9° |
C2' | C3' | F3' | C4' | 125.6° | 119.5° |
C2' | C3' | F3' | H3' | 118.5° | 120.3° |
C2' | C3' | C4' | H3' | 118.4° | 119.9° |
C2' | C3' | C4' | O4' | 173.7° | 176.9° |
C2' | C3' | C4' | C5' | 53.5° | 57.0° |
C2' | C3' | C4' | H4' | 66.2° | 62.9° |
H2' | C2' | C3' | F3' | 65.0° | 63.2° |
H2' | C2' | C3' | C4' | 168.2° | 176.9° |
H2' | C2' | C3' | H3' | 52.0° | 57.0° |
F3' | C3' | C4' | H3' | 116.7° | 120.2° |
F3' | C3' | C4' | O4' | 61.4° | 63.3° |
F3' | C3' | C4' | C5' | 178.5° | 176.8° |
F3' | C3' | C4' | H4' | 58.7° | 56.9° |
C3' | C4' | O4' | C5' | 121.3° | 119.7° |
C3' | C4' | O4' | H4' | 118.9° | 120.2° |
C3' | C4' | C5' | H4' | 118.9° | 119.9° |
C3' | C4' | O4' | HO4' | 180.0° | 60.0° |
C3' | C4' | C5' | O5' | 55.6° | 57.6° |
C3' | C4' | C5' | C6' | 172.5° | 177.6° |
C3' | C4' | C5' | H5' | 67.0° | 62.4° |
H3' | C3' | C4' | O4' | 55.3° | 56.9° |
H3' | C3' | C4' | C5' | 64.8° | 63.0° |
H3' | C3' | C4' | H4' | 175.4° | 177.1° |
O4' | C4' | C5' | H4' | 120.2° | 120.2° |
O4' | C4' | C5' | O5' | 176.5° | 177.5° |
O4' | C4' | C5' | C6' | 66.6° | 62.5° |
O4' | C4' | C5' | H5' | 53.9° | 57.5° |
C5' | C4' | O4' | HO4' | 58.7° | 179.7° |
C4' | C5' | O5' | C6' | 120.0° | 120.0° |
C4' | C5' | O5' | H5' | 119.7° | 120.0° |
C4' | C5' | C6' | H5' | 119.9° | 120.0° |
C4' | C5' | C6' | O6' | 55.2° | 175.0° |
C4' | C5' | C6' | H6' | 175.2° | 54.9° |
C4' | C5' | C6' | H6'A | 64.8° | 65.0° |
H4' | C4' | O4' | HO4' | 61.1° | 60.1° |
H4' | C4' | C5' | O5' | 63.3° | 62.3° |
H4' | C4' | C5' | C6' | 53.6° | 57.7° |
H4' | C4' | C5' | H5' | 174.1° | 177.7° |
O5' | C5' | C6' | H5' | 122.6° | 120.0° |
O5' | C5' | C6' | O6' | 62.4° | 65.0° |
O5' | C5' | C6' | H6' | 57.6° | 174.9° |
O5' | C5' | C6' | H6'A | 177.6° | 55.0° |
C5' | C6' | O6' | H6' | 120.0° | 120.0° |
C5' | C6' | O6' | H6'A | 120.0° | 120.0° |
C5' | C6' | H6' | H6'A | 120.8° | 120.0° |
H5' | C5' | C6' | O6' | 175.0° | 55.0° |
H5' | C5' | C6' | H6' | 65.0° | 65.1° |
H5' | C5' | C6' | H6'A | 55.0° | 175.0° |
H5M | C5M | H5MA | H5MB | 120.0° | 120.0° |
O6' | C6' | H6' | H6'A | 120.8° | 120.0° |
C6' | O6' | P | O1P | 163.0° | 175.0° |
C6' | O6' | P | O2P | 77.0° | 55.0° |
C6' | O6' | P | O3P | 43.0° | 65.0° |
O1P | P | O2P | O3P | 120.0° | 120.0° |
O1P | P | O3P | H16 | 120.0° | 60.0° |
O2P | P | O1P | H15 | 0.0° | 60.0° |
O2P | P | O3P | H16 | 0.0° | 180.0° |
O3P | P | O1P | H15 | 120.0° | 60.0° |