F3C
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O2 | C2 | doub | 1.22Å | 1.21Å | |
C2 | N3 | sing | 1.33Å | 1.32Å | |
C2 | N1 | sing | 1.35Å | 1.32Å | |
N3 | C4 | doub | 1.33Å | 1.33Å | |
C2' | C1' | sing | 1.54Å | 1.30Å | |
C2' | C3' | sing | 1.54Å | 1.55Å | |
C1' | N1 | sing | 1.47Å | 1.49Å | |
C1' | O4' | sing | 1.44Å | 1.58Å | |
N1 | C6 | sing | 1.36Å | 1.33Å | |
O3' | C3' | sing | 1.43Å | 1.38Å | |
C4 | N4 | sing | 1.37Å | 1.48Å | |
C4 | C5 | sing | 1.41Å | 1.39Å | |
C3' | C4' | sing | 1.55Å | 1.52Å | |
O4' | C4' | sing | 1.44Å | 1.30Å | |
C6 | C5 | doub | 1.35Å | 1.40Å | |
C4' | C5' | sing | 1.53Å | 1.60Å | |
O2B | PB | doub | 1.48Å | 1.50Å | |
C5' | O5' | sing | 1.43Å | 1.40Å | |
PB | O3A | sing | 1.61Å | 1.63Å | |
PB | O1B | sing | 1.61Å | 1.50Å | |
PB | C3B | sing | 1.82Å | 1.90Å | |
O5' | PA | sing | 1.61Å | 1.63Å | |
O3A | PA | sing | 1.61Å | 1.65Å | |
F4B | C3B | sing | 1.40Å | 1.35Å | |
C3B | PG | sing | 1.82Å | 1.84Å | |
PA | O2A | doub | 1.48Å | 1.51Å | |
PA | O1A | sing | 1.61Å | 1.51Å | |
PG | O3G | doub | 1.48Å | 1.49Å | |
PG | O1G | sing | 1.61Å | 1.50Å | |
PG | O2G | sing | 1.61Å | 1.49Å | |
N4 | H1 | sing | 0.97Å | 1.00Å | |
N4 | H2 | sing | 0.97Å | 1.00Å | |
C5 | H3 | sing | 1.08Å | 1.08Å | |
C6 | H4 | sing | 1.08Å | 1.08Å | |
C1' | H5 | sing | 1.09Å | 1.10Å | |
C2' | H6 | sing | 1.09Å | 1.10Å | |
C2' | H7 | sing | 1.09Å | 1.10Å | |
C3' | H8 | sing | 1.09Å | 1.10Å | |
O3' | H9 | sing | 0.97Å | 0.95Å | |
C4' | H10 | sing | 1.09Å | 1.10Å | |
C5' | H11 | sing | 1.09Å | 1.10Å | |
C5' | H12 | sing | 1.09Å | 1.10Å | |
O1A | H13 | sing | 0.97Å | 0.95Å | |
O1B | H14 | sing | 0.97Å | 0.95Å | |
C3B | H15 | sing | 1.09Å | 1.10Å | |
O1G | H16 | sing | 0.97Å | 0.95Å | |
O2G | H17 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O2 | C2 | N3 | 119.5° | 119.4° |
O2 | C2 | N1 | 118.7° | 119.5° |
N3 | C2 | N1 | 121.8° | 121.1° |
C2 | N3 | C4 | 119.8° | 120.7° |
C2 | N1 | C1' | 118.5° | 119.8° |
C2 | N1 | C6 | 121.5° | 120.4° |
N3 | C4 | N4 | 120.1° | 120.2° |
N3 | C4 | C5 | 120.7° | 119.6° |
C1' | C2' | C3' | 106.3° | 104.1° |
C2' | C1' | N1 | 108.5° | 110.3° |
C2' | C1' | O4' | 106.0° | 104.8° |
C2' | C1' | H5 | 113.8° | 110.5° |
C1' | C2' | H6 | 110.3° | 110.5° |
C1' | C2' | H7 | 110.2° | 110.6° |
C2' | C3' | O3' | 113.4° | 110.6° |
C2' | C3' | C4' | 99.5° | 104.0° |
C3' | C2' | H6 | 110.2° | 110.5° |
C3' | C2' | H7 | 110.3° | 110.5° |
C2' | C3' | H8 | 108.9° | 110.5° |
N1 | C1' | O4' | 108.6° | 110.4° |
C1' | N1 | C6 | 119.9° | 119.8° |
N1 | C1' | H5 | 110.5° | 110.3° |
C1' | O4' | C4' | 108.0° | 105.3° |
O4' | C1' | H5 | 109.3° | 110.4° |
N1 | C6 | C5 | 119.3° | 119.3° |
N1 | C6 | H4 | 120.3° | 120.4° |
O3' | C3' | C4' | 113.7° | 110.5° |
O3' | C3' | H8 | 111.3° | 110.6° |
C3' | O3' | H9 | 109.5° | 114.0° |
N4 | C4 | C5 | 119.2° | 120.2° |
C4 | N4 | H1 | 120.0° | 120.0° |
C4 | N4 | H2 | 120.0° | 120.0° |
C4 | C5 | C6 | 116.9° | 118.9° |
C4 | C5 | H3 | 121.5° | 120.5° |
C3' | C4' | O4' | 104.1° | 104.8° |
C3' | C4' | C5' | 113.2° | 110.4° |
C4' | C3' | H8 | 109.3° | 110.5° |
C3' | C4' | H10 | 109.8° | 110.3° |
O4' | C4' | C5' | 107.7° | 110.4° |
O4' | C4' | H10 | 113.3° | 110.4° |
C6 | C5 | H3 | 121.5° | 120.5° |
C5 | C6 | H4 | 120.3° | 120.3° |
C4' | C5' | O5' | 107.9° | 109.4° |
C5' | C4' | H10 | 108.8° | 110.4° |
C4' | C5' | H11 | 109.9° | 109.4° |
C4' | C5' | H12 | 109.9° | 109.5° |
O2B | PB | O3A | 103.9° | 109.5° |
O2B | PB | O1B | 112.1° | 109.5° |
O2B | PB | C3B | 107.1° | 109.5° |
C5' | O5' | PA | 117.1° | 123.0° |
O5' | C5' | H11 | 109.9° | 109.5° |
O5' | C5' | H12 | 109.9° | 109.5° |
O3A | PB | O1B | 113.4° | 109.5° |
O3A | PB | C3B | 105.9° | 109.4° |
PB | O3A | PA | 128.1° | 134.0° |
O1B | PB | C3B | 113.7° | 109.5° |
PB | O1B | H14 | 109.5° | 114.0° |
PB | C3B | F4B | 108.8° | 109.5° |
PB | C3B | PG | 109.2° | 109.5° |
PB | C3B | H15 | 106.7° | 109.5° |
O5' | PA | O3A | 105.7° | 109.4° |
O5' | PA | O2A | 109.5° | 109.5° |
O5' | PA | O1A | 108.7° | 109.5° |
O3A | PA | O2A | 105.7° | 109.5° |
O3A | PA | O1A | 113.2° | 109.5° |
F4B | C3B | PG | 111.0° | 109.5° |
F4B | C3B | H15 | 113.9° | 109.5° |
C3B | PG | O3G | 109.9° | 109.5° |
C3B | PG | O1G | 107.7° | 109.4° |
C3B | PG | O2G | 109.0° | 109.5° |
PG | C3B | H15 | 107.2° | 109.4° |
O2A | PA | O1A | 113.8° | 109.5° |
PA | O1A | H13 | 109.5° | 114.0° |
O3G | PG | O1G | 110.7° | 109.5° |
O3G | PG | O2G | 109.2° | 109.4° |
O1G | PG | O2G | 110.3° | 109.5° |
PG | O1G | H16 | 109.5° | 114.0° |
PG | O2G | H17 | 109.5° | 114.0° |
H1 | N4 | H2 | 120.0° | 120.0° |
H6 | C2' | H7 | 109.5° | 110.5° |
H11 | C5' | H12 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O2 | C2 | N3 | N1 | 178.7° | 180.0° |
O2 | C2 | N3 | C4 | 179.4° | 180.0° |
O2 | C2 | N1 | C1' | 3.6° | 0.0° |
O2 | C2 | N1 | C6 | 179.6° | 179.7° |
N3 | C2 | N1 | C1' | 177.7° | 180.0° |
N3 | C2 | N1 | C6 | 1.7° | 0.3° |
C2 | N3 | C4 | N4 | 179.1° | 180.0° |
C2 | N3 | C4 | C5 | 0.1° | 0.2° |
N1 | C2 | N3 | C4 | 0.7° | 0.0° |
C2 | N1 | C1' | C2' | 90.1° | 61.8° |
C2 | N1 | C1' | C6 | 176.1° | 179.8° |
C2 | N1 | C1' | O4' | 155.1° | 53.5° |
C2 | N1 | C6 | C5 | 2.0° | 0.3° |
C2 | N1 | C6 | H4 | 177.9° | 179.7° |
C2 | N1 | C1' | H5 | 35.2° | 175.8° |
N3 | C4 | N4 | C5 | 179.3° | 179.8° |
N3 | C4 | C5 | C6 | 0.5° | 0.2° |
N3 | C4 | N4 | H1 | 0.0° | 179.7° |
N3 | C4 | N4 | H2 | 180.0° | 0.2° |
N3 | C4 | C5 | H3 | 179.5° | 179.8° |
C1' | C2' | C3' | H6 | 119.5° | 118.6° |
C1' | C2' | C3' | H7 | 119.5° | 118.7° |
C2' | C1' | N1 | O4' | 114.8° | 115.3° |
C2' | C1' | N1 | H5 | 125.3° | 122.4° |
C2' | C1' | O4' | H5 | 123.0° | 119.0° |
C2' | C1' | N1 | C6 | 86.0° | 117.9° |
C1' | C2' | C3' | O3' | 156.8° | 118.6° |
C1' | C2' | C3' | C4' | 35.7° | 0.1° |
C2' | C1' | O4' | C4' | 6.1° | 40.6° |
C1' | C2' | H6 | H7 | 121.5° | 122.7° |
C1' | C2' | C3' | H8 | 78.7° | 118.7° |
C3' | C2' | C1' | N1 | 97.0° | 142.8° |
C3' | C2' | C1' | O4' | 19.5° | 24.0° |
C2' | C3' | O3' | C4' | 112.8° | 114.7° |
C2' | C3' | O3' | H8 | 123.2° | 122.7° |
C2' | C3' | C4' | H8 | 114.0° | 118.6° |
C2' | C3' | C4' | O4' | 38.9° | 23.9° |
C2' | C3' | C4' | C5' | 155.6° | 142.8° |
C3' | C2' | C1' | H5 | 139.7° | 94.9° |
C3' | C2' | H6 | H7 | 121.5° | 122.6° |
C2' | C3' | O3' | H9 | 145.8° | 61.5° |
C2' | C3' | C4' | H10 | 82.6° | 94.9° |
N1 | C1' | O4' | H5 | 120.6° | 122.2° |
N1 | C1' | O4' | C4' | 122.5° | 159.3° |
C1' | N1 | C6 | C5 | 178.0° | 180.0° |
C1' | N1 | C6 | H4 | 2.0° | 0.0° |
N1 | C1' | C2' | H6 | 143.5° | 98.6° |
N1 | C1' | C2' | H7 | 22.5° | 24.1° |
O4' | C1' | N1 | C6 | 28.8° | 126.7° |
C1' | O4' | C4' | C3' | 28.9° | 40.5° |
C1' | O4' | C4' | C5' | 149.4° | 159.3° |
O4' | C1' | C2' | H6 | 100.0° | 142.6° |
O4' | C1' | C2' | H7 | 139.0° | 94.6° |
C1' | O4' | C4' | H10 | 90.3° | 78.2° |
N1 | C6 | C5 | C4 | 1.4° | 0.0° |
N1 | C6 | C5 | H4 | 180.0° | 180.0° |
N1 | C6 | C5 | H3 | 178.6° | 180.0° |
C6 | N1 | C1' | H5 | 148.7° | 4.5° |
O3' | C3' | C4' | H8 | 125.1° | 122.7° |
O3' | C3' | C4' | O4' | 159.8° | 142.6° |
O3' | C3' | C4' | C5' | 83.5° | 98.5° |
O3' | C3' | C2' | H6 | 37.3° | 0.0° |
O3' | C3' | C2' | H7 | 83.7° | 122.7° |
O3' | C3' | C4' | H10 | 38.2° | 23.8° |
N4 | C4 | C5 | C6 | 178.8° | 180.0° |
C4 | N4 | H1 | H2 | 179.9° | 180.0° |
N4 | C4 | C5 | H3 | 1.2° | 0.0° |
C4 | C5 | C6 | H3 | 180.0° | 180.0° |
C5 | C4 | N4 | H1 | 179.2° | 0.1° |
C5 | C4 | N4 | H2 | 0.7° | 180.0° |
C4 | C5 | C6 | H4 | 178.6° | 180.0° |
C3' | C4' | O4' | C5' | 120.4° | 118.8° |
C3' | C4' | O4' | H10 | 119.2° | 118.8° |
C3' | C4' | C5' | H10 | 122.3° | 122.3° |
C3' | C4' | C5' | O5' | 57.6° | 175.0° |
C4' | C3' | C2' | H6 | 83.8° | 118.7° |
C4' | C3' | C2' | H7 | 155.2° | 118.7° |
C4' | C3' | O3' | H9 | 101.4° | 176.1° |
C3' | C4' | C5' | H11 | 177.3° | 55.0° |
C3' | C4' | C5' | H12 | 62.2° | 65.0° |
O4' | C4' | C5' | H10 | 123.1° | 122.4° |
O4' | C4' | C5' | O5' | 57.0° | 69.7° |
C4' | O4' | C1' | H5 | 116.9° | 78.4° |
O4' | C4' | C3' | H8 | 75.1° | 94.7° |
O4' | C4' | C5' | H11 | 62.8° | 170.4° |
O4' | C4' | C5' | H12 | 176.7° | 50.3° |
C4' | C5' | O5' | H11 | 119.8° | 119.9° |
C4' | C5' | O5' | H12 | 119.8° | 120.0° |
C4' | C5' | O5' | PA | 131.6° | 180.0° |
C5' | C4' | C3' | H8 | 41.6° | 24.2° |
C4' | C5' | H11 | H12 | 120.7° | 120.0° |
O2B | PB | O3A | O1B | 122.0° | 120.0° |
O2B | PB | O3A | C3B | 112.7° | 120.0° |
O2B | PB | O1B | C3B | 121.7° | 120.0° |
O2B | PB | O3A | PA | 142.4° | 60.0° |
O2B | PB | C3B | F4B | 28.4° | 60.0° |
O2B | PB | C3B | PG | 149.6° | 60.0° |
O2B | PB | O1B | H14 | 0.0° | 180.0° |
O2B | PB | C3B | H15 | 94.9° | 180.0° |
C5' | O5' | PA | O3A | 70.3° | 175.0° |
C5' | O5' | PA | O2A | 176.2° | 55.1° |
C5' | O5' | PA | O1A | 51.4° | 65.0° |
O5' | C5' | C4' | H10 | 179.9° | 52.7° |
O5' | C5' | H11 | H12 | 120.7° | 120.1° |
O3A | PB | O1B | C3B | 121.0° | 120.0° |
PB | O3A | PA | O5' | 110.6° | 165.0° |
O3A | PB | C3B | F4B | 138.9° | 60.0° |
O3A | PB | C3B | PG | 99.9° | 180.0° |
PB | O3A | PA | O2A | 133.4° | 45.0° |
PB | O3A | PA | O1A | 8.2° | 75.0° |
O3A | PB | O1B | H14 | 117.3° | 60.0° |
O3A | PB | C3B | H15 | 15.6° | 60.0° |
O1B | PB | O3A | PA | 20.5° | 60.0° |
O1B | PB | C3B | F4B | 96.0° | 180.0° |
O1B | PB | C3B | PG | 25.2° | 60.0° |
O1B | PB | C3B | H15 | 140.7° | 59.9° |
C3B | PB | O3A | PA | 104.8° | 180.0° |
PB | C3B | F4B | PG | 120.1° | 120.0° |
PB | C3B | F4B | H15 | 118.8° | 120.0° |
PB | C3B | PG | H15 | 115.2° | 120.0° |
PB | C3B | PG | O3G | 88.3° | 60.0° |
PB | C3B | PG | O1G | 32.3° | 180.0° |
PB | C3B | PG | O2G | 152.0° | 60.0° |
C3B | PB | O1B | H14 | 121.7° | 60.0° |
O5' | PA | O3A | O2A | 116.0° | 120.0° |
O5' | PA | O3A | O1A | 118.8° | 120.0° |
O5' | PA | O2A | O1A | 121.8° | 120.0° |
PA | O5' | C5' | H11 | 108.6° | 60.1° |
PA | O5' | C5' | H12 | 11.8° | 60.0° |
O5' | PA | O1A | H13 | 122.2° | 60.0° |
O3A | PA | O2A | O1A | 124.8° | 120.0° |
O3A | PA | O1A | H13 | 120.7° | 60.0° |
F4B | C3B | PG | H15 | 124.9° | 120.0° |
F4B | C3B | PG | O3G | 31.6° | 60.0° |
F4B | C3B | PG | O1G | 152.2° | 60.0° |
F4B | C3B | PG | O2G | 88.1° | 180.0° |
C3B | PG | O3G | O1G | 118.8° | 120.0° |
C3B | PG | O3G | O2G | 119.6° | 120.0° |
C3B | PG | O1G | O2G | 118.9° | 120.0° |
C3B | PG | O1G | H16 | 120.1° | 180.0° |
C3B | PG | O2G | H17 | 120.0° | 60.0° |
O2A | PA | O1A | H13 | 0.0° | 180.0° |
O3G | PG | O1G | O2G | 121.0° | 120.0° |
O3G | PG | C3B | H15 | 156.5° | 180.0° |
O3G | PG | O1G | H16 | 0.0° | 60.0° |
O3G | PG | O2G | H17 | 0.0° | 180.0° |
O1G | PG | C3B | H15 | 82.9° | 60.1° |
O1G | PG | O2G | H17 | 121.9° | 60.0° |
O2G | PG | C3B | H15 | 36.8° | 60.0° |
O2G | PG | O1G | H16 | 121.0° | 59.9° |
H3 | C5 | C6 | H4 | 1.4° | 0.0° |
H5 | C1' | C2' | H6 | 20.1° | 23.7° |
H5 | C1' | C2' | H7 | 100.8° | 146.4° |
H6 | C2' | C3' | H8 | 161.8° | 122.7° |
H7 | C2' | C3' | H8 | 40.8° | 0.1° |
H8 | C3' | O3' | H9 | 22.6° | 61.3° |
H8 | C3' | C4' | H10 | 163.3° | 146.5° |
H10 | C4' | C5' | H11 | 60.3° | 67.3° |
H10 | C4' | C5' | H12 | 60.1° | 172.7° |