English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

F05

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C6	C1	sing	1.38Å	1.40Å	Aromatic
C1	C2	doub	1.38Å	1.40Å	Aromatic
C1	H1	sing	1.08Å	1.08Å
C3	C2	sing	1.38Å	1.40Å	Aromatic
C2	H2	sing	1.08Å	1.08Å
C4	C3	doub	1.39Å	1.40Å	Aromatic
C3	H3	sing	1.08Å	1.08Å
C9	C4	sing	1.48Å	1.50Å
C5	C4	sing	1.40Å	1.39Å	Aromatic
C7	C5	sing	1.51Å	1.53Å
C5	C6	doub	1.37Å	1.40Å	Aromatic
C6	H6	sing	1.08Å	1.08Å
N8	C7	sing	1.47Å	1.46Å
C7	H7	sing	1.09Å	1.10Å
N8	C9	doub	1.30Å	1.29Å
C9	N10	sing	1.38Å	1.36Å
N10	HN10	sing	0.97Å	1.00Å
N10	HN1A	sing	0.97Å	1.00Å
C7	H4	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C6	C1	C2	120.8°	120.1°
C6	C1	H1	119.6°	120.0°
C1	C6	C5	115.8°	119.9°
C1	C6	H6	122.1°	120.0°
C2	C1	H1	119.6°	119.9°
C1	C2	C3	122.8°	120.3°
C1	C2	H2	118.6°	119.8°
C3	C2	H2	118.6°	119.8°
C2	C3	C4	116.2°	119.8°
C2	C3	H3	121.9°	120.1°
C4	C3	H3	121.9°	120.1°
C3	C4	C9	134.1°	132.7°
C3	C4	C5	120.8°	119.3°
C9	C4	C5	105.1°	107.9°
C4	C9	N8	111.7°	111.0°
C4	C9	N10	124.9°	124.5°
C4	C5	C7	108.7°	105.7°
C4	C5	C6	123.5°	120.4°
C7	C5	C6	127.7°	133.9°
C5	C7	N8	103.0°	105.9°
C5	C7	H7	111.1°	110.2°
C5	C7	H4	111.0°	110.2°
C5	C6	H6	122.1°	120.0°
N8	C7	H7	111.1°	110.1°
C7	N8	C9	111.4°	109.5°
N8	C7	H4	111.0°	110.2°
H7	C7	H4	109.5°	110.1°
N8	C9	N10	123.3°	124.5°
C9	N10	HN10	120.0°	120.0°
C9	N10	HN1A	120.0°	120.0°
HN10	N10	HN1A	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C6	C1	C2	H1	180.0°	179.7°
C6	C1	C2	C3	1.9°	0.3°
C6	C1	C2	H2	178.1°	179.7°
C1	C6	C5	C4	1.2°	0.6°
C1	C6	C5	C7	177.3°	179.8°
C1	C6	C5	H6	180.0°	179.5°
C1	C2	C3	H2	180.0°	180.0°
C1	C2	C3	C4	0.1°	0.0°
C1	C2	C3	H3	179.9°	180.0°
C2	C1	C6	C5	1.2°	0.6°
C2	C1	C6	H6	178.8°	180.0°
H1	C1	C2	C3	178.1°	180.0°
H1	C1	C2	H2	1.9°	0.0°
H1	C1	C6	C5	178.8°	179.8°
H1	C1	C6	H6	1.2°	0.3°
C2	C3	C4	H3	180.0°	180.0°
C2	C3	C4	C9	178.9°	180.0°
C2	C3	C4	C5	2.4°	0.0°
H2	C2	C3	C4	179.9°	180.0°
H2	C2	C3	H3	0.1°	0.0°
C3	C4	C9	C5	178.9°	180.0°
C3	C4	C5	C7	179.8°	180.0°
C3	C4	C5	C6	3.1°	0.3°
C3	C4	C9	N8	177.9°	180.0°
C3	C4	C9	N10	4.1°	0.1°
H3	C3	C4	C9	1.1°	0.0°
H3	C3	C4	C5	177.7°	180.0°
C9	C4	C5	C7	1.1°	0.0°
C9	C4	C5	C6	177.8°	179.7°
C4	C9	N8	C7	4.0°	0.0°
C4	C9	N8	N10	178.0°	179.9°
C4	C9	N10	HN10	177.8°	180.0°
C4	C9	N10	HN1A	2.2°	0.1°
C4	C5	C7	C6	176.5°	179.7°
C4	C5	C6	H6	178.7°	180.0°
C4	C5	C7	N8	1.0°	0.0°
C4	C5	C7	H7	120.0°	119.1°
C5	C4	C9	N8	3.2°	0.0°
C5	C4	C9	N10	174.8°	180.0°
C4	C5	C7	H4	117.9°	119.2°
C7	C5	C6	H6	2.7°	0.3°
C5	C7	N8	H7	119.0°	119.1°
C5	C7	N8	H4	118.9°	119.1°
C5	C7	H7	H4	123.0°	121.8°
C5	C7	N8	C9	3.1°	0.0°
C6	C5	C7	N8	175.5°	179.7°
C6	C5	C7	H7	56.5°	60.6°
C6	C5	C7	H4	65.6°	61.2°
N8	C7	H7	H4	123.0°	121.8°
C7	N8	C9	N10	174.0°	180.0°
H7	C7	N8	C9	122.1°	119.2°
N8	C9	N10	HN10	0.0°	0.1°
N8	C9	N10	HN1A	180.0°	180.0°
C9	N8	C7	H4	115.8°	119.1°
C9	N10	HN10	HN1A	180.0°	180.0°

246704

PDB entries from 2025-12-24

PDB statistics

PDBj update info

Contact PDBj

numon