EXC

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	OP3	sing	0.00Å	1.61Å
P	OP1	sing	0.00Å	1.51Å
C1	C6	sing	0.00Å	1.39Å
N2	C1	doub	0.00Å	1.35Å
N2	C3	sing	0.00Å	1.36Å
C3	N4	sing	0.00Å	1.35Å
N4	C1'	sing	0.00Å	1.46Å
N4	C5	sing	0.00Å	1.34Å
C5	H5	sing	0.00Å	1.08Å
C6	C5	doub	0.00Å	1.39Å
C6	O10	sing	0.00Å	1.37Å
N7	C1	sing	0.00Å	1.35Å
N7	C8	sing	0.00Å	1.37Å
C8	C9	sing	0.00Å	1.40Å	Aromatic
C9	O10	sing	0.00Å	1.38Å
C9	C11	doub	0.00Å	1.40Å	Aromatic
C1'	C2'	sing	0.00Å	1.51Å
C1'	O4'	sing	0.00Å	1.44Å
C1'	H1'	sing	0.00Å	1.10Å
C11	H11	sing	0.00Å	1.08Å
C12	C11	sing	0.00Å	1.39Å	Aromatic
C12	C17	sing	0.00Å	1.50Å
C13	C12	doub	0.00Å	1.37Å	Aromatic
C14	C8	doub	0.00Å	1.40Å	Aromatic
C14	C13	sing	0.00Å	1.39Å	Aromatic
C14	H14	sing	0.00Å	1.08Å
C15	C13	sing	0.00Å	1.50Å
C15	N16	sing	0.00Å	1.47Å
N16	O21	sing	0.00Å	1.22Å
N16	C17	sing	0.00Å	1.46Å
C17	C23	sing	0.00Å	1.52Å
C17	C22	sing	0.00Å	1.53Å
O18	C3	doub	0.00Å	1.26Å
C19	C15	sing	0.00Å	1.53Å
C19	H19	sing	0.00Å	1.10Å
C19	H19A	sing	0.00Å	1.10Å
C19	H19B	sing	0.00Å	1.10Å
C2'	C3'	sing	0.00Å	1.51Å
C2'	H2'	sing	0.00Å	1.10Å
C2'	H2'A	sing	0.00Å	1.10Å
C20	C15	sing	0.00Å	1.52Å
C20	H20	sing	0.00Å	1.10Å
C20	H20A	sing	0.00Å	1.10Å
C20	H20B	sing	0.00Å	1.10Å
C22	H22	sing	0.00Å	1.10Å
C22	H22A	sing	0.00Å	1.10Å
C22	H22B	sing	0.00Å	1.10Å
C23	H23	sing	0.00Å	1.10Å
C23	H23A	sing	0.00Å	1.10Å
C23	H23B	sing	0.00Å	1.10Å
C3'	O3'	sing	0.00Å	1.42Å
C3'	C4'	sing	0.00Å	1.52Å
C3'	H3'	sing	0.00Å	1.10Å
O3'	HO3'	sing	0.00Å	0.95Å
C4'	C5'	sing	0.00Å	1.52Å
C4'	H4'	sing	0.00Å	1.10Å
O4'	C4'	sing	0.00Å	1.43Å
C5'	O5'	sing	0.00Å	1.43Å
C5'	H5'	sing	0.00Å	1.10Å
C5'	H5'A	sing	0.00Å	1.10Å
O5'	P	sing	0.00Å	1.61Å
OP1	HOP1	sing	0.00Å	0.95Å
OP2	P	doub	0.00Å	1.51Å
OP3	HOP3	sing	0.00Å	0.95Å
N7	H26	sing	0.00Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP3	P	OP1	107.9°	90.0°
OP3	P	O5'	103.8°	90.0°
OP3	P	OP2	108.3°	90.0°
P	OP3	HOP3	109.5°	90.0°
OP1	P	O5'	107.2°	90.0°
P	OP1	HOP1	109.5°	90.0°
OP1	P	OP2	121.6°	90.0°
C6	C1	N2	119.7°	90.0°
C1	C6	C5	119.3°	90.0°
C1	C6	O10	120.5°	90.0°
C6	C1	N7	120.4°	90.0°
C1	N2	C3	119.8°	90.0°
N2	C1	N7	119.8°	90.0°
N2	C3	N4	120.8°	90.0°
N2	C3	O18	119.2°	90.0°
C3	N4	C1'	119.8°	90.0°
C3	N4	C5	121.6°	90.0°
N4	C3	O18	120.0°	90.0°
C1'	N4	C5	118.6°	90.0°
N4	C1'	C2'	113.1°	90.0°
N4	C1'	O4'	108.2°	90.0°
N4	C1'	H1'	107.6°	90.0°
N4	C5	H5	120.6°	90.0°
N4	C5	C6	118.8°	90.0°
H5	C5	C6	120.6°	90.0°
C5	C6	O10	120.2°	90.0°
C6	O10	C9	118.8°	90.0°
C1	N7	C8	120.0°	90.0°
C1	N7	H26	120.0°	90.0°
N7	C8	C9	120.1°	90.0°
N7	C8	C14	120.0°	90.0°
C8	N7	H26	120.0°	90.0°
C8	C9	O10	120.2°	90.0°
C8	C9	C11	120.8°	90.0°
C9	C8	C14	120.0°	90.0°
O10	C9	C11	119.0°	90.0°
C9	C11	H11	120.8°	90.0°
C9	C11	C12	118.3°	90.0°
C2'	C1'	O4'	108.6°	90.0°
C2'	C1'	H1'	107.2°	90.0°
C1'	C2'	C3'	102.8°	90.0°
C1'	C2'	H2'	111.8°	90.0°
C1'	C2'	H2'A	111.8°	90.0°
O4'	C1'	H1'	112.2°	90.0°
C1'	O4'	C4'	110.1°	90.0°
H11	C11	C12	120.9°	90.0°
C11	C12	C17	126.7°	90.0°
C11	C12	C13	121.4°	90.0°
C17	C12	C13	111.8°	90.0°
C12	C17	N16	99.9°	90.0°
C12	C17	C23	108.7°	90.0°
C12	C17	C22	111.8°	90.0°
C12	C13	C14	121.1°	90.0°
C12	C13	C15	111.3°	90.0°
C8	C14	C13	118.4°	90.0°
C8	C14	H14	120.8°	90.0°
C13	C14	H14	120.8°	90.0°
C14	C13	C15	127.6°	90.0°
C13	C15	N16	99.9°	90.0°
C13	C15	C19	109.7°	90.0°
C13	C15	C20	111.0°	90.0°
C15	N16	O21	122.9°	90.0°
C15	N16	C17	115.4°	90.0°
N16	C15	C19	112.6°	90.0°
N16	C15	C20	112.0°	90.0°
O21	N16	C17	121.7°	90.0°
N16	C17	C23	110.7°	90.0°
N16	C17	C22	113.7°	90.0°
C23	C17	C22	111.4°	90.0°
C17	C23	H23	109.5°	90.0°
C17	C23	H23A	109.5°	90.0°
C17	C23	H23B	109.5°	90.0°
C17	C22	H22	109.5°	90.0°
C17	C22	H22A	109.5°	90.0°
C17	C22	H22B	109.4°	90.0°
C15	C19	H19	109.5°	90.0°
C15	C19	H19A	109.5°	90.0°
C15	C19	H19B	109.5°	90.0°
C19	C15	C20	111.1°	90.0°
H19	C19	H19A	109.5°	90.0°
H19	C19	H19B	109.4°	90.0°
H19A	C19	H19B	109.5°	90.0°
C3'	C2'	H2'	111.7°	90.0°
C3'	C2'	H2'A	111.8°	90.0°
C2'	C3'	O3'	109.9°	90.0°
C2'	C3'	C4'	105.8°	90.0°
C2'	C3'	H3'	111.6°	90.0°
H2'	C2'	H2'A	107.1°	90.0°
C15	C20	H20	109.5°	90.0°
C15	C20	H20A	109.5°	90.0°
C15	C20	H20B	109.5°	90.0°
H20	C20	H20A	109.5°	90.0°
H20	C20	H20B	109.5°	90.0°
H20A	C20	H20B	109.5°	90.0°
H22	C22	H22A	109.4°	90.0°
H22	C22	H22B	109.5°	90.0°
H22A	C22	H22B	109.5°	90.0°
H23	C23	H23A	109.4°	90.0°
H23	C23	H23B	109.5°	90.0°
H23A	C23	H23B	109.5°	90.0°
O3'	C3'	C4'	109.6°	90.0°
O3'	C3'	H3'	108.0°	90.0°
C3'	O3'	HO3'	109.5°	90.0°
C4'	C3'	H3'	111.9°	90.0°
C3'	C4'	C5'	111.1°	90.0°
C3'	C4'	H4'	112.3°	90.0°
C3'	C4'	O4'	104.2°	90.0°
C5'	C4'	H4'	106.2°	90.0°
C5'	C4'	O4'	110.5°	90.0°
C4'	C5'	O5'	108.0°	90.0°
C4'	C5'	H5'	110.0°	90.0°
C4'	C5'	H5'A	110.0°	90.0°
H4'	C4'	O4'	112.8°	90.0°
O5'	C5'	H5'	110.0°	90.0°
O5'	C5'	H5'A	110.0°	90.0°
C5'	O5'	P	122.0°	90.0°
H5'	C5'	H5'A	109.0°	90.0°
O5'	P	OP2	106.7°	90.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP3	P	OP1	O5'	111.2°	90.0°
OP3	P	OP1	OP2	125.9°	90.0°
OP3	P	O5'	C5'	68.8°	90.0°
OP3	P	O5'	OP2	114.3°	90.0°
OP3	P	OP1	HOP1	125.9°	90.0°
OP1	P	O5'	C5'	45.2°	90.0°
OP1	P	O5'	OP2	131.7°	90.0°
OP1	P	OP3	HOP3	133.4°	90.0°
C6	C1	N2	N7	179.7°	90.0°
C6	C1	N2	C3	0.3°	90.0°
C1	C6	C5	N4	1.2°	90.0°
C1	C6	C5	H5	178.8°	90.0°
C1	C6	C5	O10	179.6°	90.0°
C6	C1	N7	C8	0.0°	90.0°
C1	C6	O10	C9	1.0°	90.0°
C6	C1	N7	H26	180.0°	90.0°
C1	N2	C3	N4	0.9°	90.0°
N2	C1	C6	C5	0.4°	90.0°
N2	C1	C6	O10	180.0°	90.0°
N2	C1	N7	C8	179.7°	90.0°
C1	N2	C3	O18	179.3°	90.0°
N2	C1	N7	H26	0.3°	90.0°
N2	C3	N4	O18	178.4°	90.0°
N2	C3	N4	C1'	178.3°	90.0°
N2	C3	N4	C5	1.8°	90.0°
C3	N2	C1	N7	179.4°	90.0°
C3	N4	C1'	C5	176.7°	90.0°
C3	N4	C5	H5	178.1°	90.0°
C3	N4	C5	C6	1.9°	90.0°
C3	N4	C1'	C2'	84.9°	90.0°
C3	N4	C1'	O4'	154.8°	90.0°
C3	N4	C1'	H1'	33.3°	90.0°
C1'	N4	C5	H5	1.5°	90.0°
C1'	N4	C5	C6	178.5°	90.0°
N4	C1'	C2'	O4'	120.2°	90.0°
N4	C1'	C2'	H1'	118.5°	90.0°
N4	C1'	O4'	H1'	118.6°	90.0°
C1'	N4	C3	O18	3.3°	90.0°
N4	C1'	C2'	C3'	107.8°	90.0°
N4	C1'	C2'	H2'	132.2°	90.0°
N4	C1'	C2'	H2'A	12.2°	90.0°
N4	C1'	O4'	C4'	129.4°	90.0°
N4	C5	H5	C6	180.0°	90.0°
N4	C5	C6	O10	179.2°	90.0°
C5	N4	C1'	C2'	98.5°	90.0°
C5	N4	C1'	O4'	21.9°	90.0°
C5	N4	C1'	H1'	143.3°	90.0°
C5	N4	C3	O18	179.8°	90.0°
H5	C5	C6	O10	0.8°	90.0°
C5	C6	C1	N7	179.3°	90.0°
C5	C6	O10	C9	178.6°	90.0°
O10	C6	C1	N7	0.3°	90.0°
C6	O10	C9	C8	1.4°	90.0°
C6	O10	C9	C11	179.6°	90.0°
C1	N7	C8	H26	180.0°	90.0°
C1	N7	C8	C9	0.4°	90.0°
C1	N7	C8	C14	179.8°	90.0°
N7	C8	C9	C14	179.8°	90.0°
N7	C8	C9	O10	1.1°	90.0°
N7	C8	C9	C11	179.9°	90.0°
N7	C8	C14	C13	179.9°	90.0°
N7	C8	C14	H14	0.2°	90.0°
C8	C9	O10	C11	179.0°	90.0°
C8	C9	C11	H11	179.7°	90.0°
C8	C9	C11	C12	0.3°	90.0°
C9	C8	C14	C13	0.0°	90.0°
C9	C8	C14	H14	180.0°	90.0°
C9	C8	N7	H26	179.6°	90.0°
O10	C9	C11	H11	1.3°	90.0°
O10	C9	C11	C12	178.7°	90.0°
O10	C9	C8	C14	179.1°	90.0°
C9	C11	H11	C12	180.0°	90.0°
C9	C11	C12	C17	178.8°	90.0°
C9	C11	C12	C13	0.8°	90.0°
C11	C9	C8	C14	0.1°	90.0°
C2'	C1'	O4'	H1'	118.3°	90.0°
C1'	C2'	C3'	H2'	120.0°	90.0°
C1'	C2'	C3'	H2'A	120.0°	90.0°
C1'	C2'	H2'	H2'A	122.7°	90.0°
C1'	C2'	C3'	O3'	143.6°	90.0°
C1'	C2'	C3'	C4'	25.3°	90.0°
C1'	C2'	C3'	H3'	96.6°	90.0°
C2'	C1'	O4'	C4'	6.3°	90.0°
O4'	C1'	C2'	C3'	12.3°	90.0°
O4'	C1'	C2'	H2'	107.7°	90.0°
O4'	C1'	C2'	H2'A	132.3°	90.0°
C1'	O4'	C4'	C3'	22.1°	90.0°
C1'	O4'	C4'	C5'	141.5°	90.0°
C1'	O4'	C4'	H4'	99.9°	90.0°
H1'	C1'	C2'	C3'	133.7°	90.0°
H1'	C1'	C2'	H2'	13.7°	90.0°
H1'	C1'	C2'	H2'A	106.3°	90.0°
H1'	C1'	O4'	C4'	112.0°	90.0°
H11	C11	C12	C17	1.2°	90.0°
H11	C11	C12	C13	179.2°	90.0°
C11	C12	C17	C13	178.1°	90.0°
C11	C12	C13	C14	0.9°	90.0°
C11	C12	C13	C15	179.5°	90.0°
C11	C12	C17	N16	171.9°	90.0°
C11	C12	C17	C23	55.9°	90.0°
C11	C12	C17	C22	67.5°	90.0°
C17	C12	C13	C14	179.1°	90.0°
C17	C12	C13	C15	1.3°	90.0°
C12	C17	N16	C15	12.3°	90.0°
C12	C17	N16	O21	166.4°	90.0°
C12	C17	N16	C23	114.5°	90.0°
C12	C17	N16	C22	119.2°	90.0°
C12	C17	C23	C22	123.6°	90.0°
C12	C17	C22	H22	180.0°	90.0°
C12	C17	C22	H22A	60.0°	90.0°
C12	C17	C22	H22B	60.0°	90.0°
C12	C17	C23	H23	180.0°	90.0°
C12	C17	C23	H23A	60.0°	90.0°
C12	C17	C23	H23B	60.0°	90.0°
C12	C13	C14	C8	0.4°	90.0°
C12	C13	C14	C15	179.5°	90.0°
C12	C13	C14	H14	179.5°	90.0°
C12	C13	C15	N16	8.2°	90.0°
C13	C12	C17	N16	6.2°	90.0°
C13	C12	C17	C23	122.2°	90.0°
C13	C12	C17	C22	114.4°	90.0°
C12	C13	C15	C19	110.3°	90.0°
C12	C13	C15	C20	126.5°	90.0°
C8	C14	C13	H14	180.0°	90.0°
C8	C14	C13	C15	179.9°	90.0°
C14	C8	N7	H26	0.2°	90.0°
C14	C13	C15	N16	172.3°	90.0°
C14	C13	C15	C19	69.2°	90.0°
C14	C13	C15	C20	54.0°	90.0°
H14	C14	C13	C15	0.1°	90.0°
C13	C15	N16	C19	116.3°	90.0°
C13	C15	N16	C20	117.6°	90.0°
C13	C15	N16	O21	165.7°	90.0°
C13	C15	N16	C17	13.0°	90.0°
C13	C15	C19	C20	123.1°	90.0°
C13	C15	C19	H19	180.0°	90.0°
C13	C15	C19	H19A	60.0°	90.0°
C13	C15	C19	H19B	60.0°	90.0°
C13	C15	C20	H20	180.0°	90.0°
C13	C15	C20	H20A	60.0°	90.0°
C13	C15	C20	H20B	60.0°	90.0°
C15	N16	O21	C17	178.6°	90.0°
C15	N16	C17	C23	126.7°	90.0°
C15	N16	C17	C22	107.0°	90.0°
N16	C15	C19	C20	126.6°	90.0°
N16	C15	C19	H19	69.7°	90.0°
N16	C15	C19	H19A	50.4°	90.0°
N16	C15	C19	H19B	170.3°	90.0°
N16	C15	C20	H20	69.3°	90.0°
N16	C15	C20	H20A	170.7°	90.0°
N16	C15	C20	H20B	50.7°	90.0°
O21	N16	C17	C23	51.9°	90.0°
O21	N16	C17	C22	74.4°	90.0°
O21	N16	C15	C19	78.0°	90.0°
O21	N16	C15	C20	48.1°	90.0°
N16	C17	C23	C22	127.6°	90.0°
C17	N16	C15	C19	103.4°	90.0°
C17	N16	C15	C20	130.5°	90.0°
N16	C17	C22	H22	67.8°	90.0°
N16	C17	C22	H22A	172.2°	90.0°
N16	C17	C22	H22B	52.2°	90.0°
N16	C17	C23	H23	71.2°	90.0°
N16	C17	C23	H23A	48.8°	90.0°
N16	C17	C23	H23B	168.8°	90.0°
C23	C17	C22	H22	58.2°	90.0°
C23	C17	C22	H22A	61.8°	90.0°
C23	C17	C22	H22B	178.2°	90.0°
C17	C23	H23	H23A	120.0°	90.0°
C17	C23	H23	H23B	120.0°	90.0°
C17	C23	H23A	H23B	120.0°	90.0°
C17	C22	H22	H22A	120.0°	90.0°
C17	C22	H22	H22B	120.0°	90.0°
C17	C22	H22A	H22B	120.0°	90.0°
C22	C17	C23	H23	56.4°	90.0°
C22	C17	C23	H23A	176.4°	90.0°
C22	C17	C23	H23B	63.6°	90.0°
C15	C19	H19	H19A	120.0°	90.0°
C15	C19	H19	H19B	120.0°	90.0°
C15	C19	H19A	H19B	120.0°	90.0°
C19	C15	C20	H20	57.6°	90.0°
C19	C15	C20	H20A	62.3°	90.0°
C19	C15	C20	H20B	177.6°	90.0°
H19	C19	H19A	H19B	120.0°	90.0°
H19	C19	C15	C20	56.9°	90.0°
H19A	C19	C15	C20	176.9°	90.0°
H19B	C19	C15	C20	63.1°	90.0°
C3'	C2'	H2'	H2'A	122.7°	90.0°
C2'	C3'	O3'	C4'	115.9°	90.0°
C2'	C3'	O3'	H3'	122.0°	90.0°
C2'	C3'	C4'	H3'	121.8°	90.0°
C2'	C3'	O3'	HO3'	180.0°	90.0°
C2'	C3'	C4'	C5'	148.6°	90.0°
C2'	C3'	C4'	H4'	92.8°	90.0°
C2'	C3'	C4'	O4'	29.6°	90.0°
H2'	C2'	C3'	O3'	23.6°	90.0°
H2'	C2'	C3'	C4'	94.7°	90.0°
H2'	C2'	C3'	H3'	143.4°	90.0°
H2'A	C2'	C3'	O3'	96.4°	90.0°
H2'A	C2'	C3'	C4'	145.3°	90.0°
H2'A	C2'	C3'	H3'	23.4°	90.0°
C15	C20	H20	H20A	120.0°	90.0°
C15	C20	H20	H20B	120.0°	90.0°
C15	C20	H20A	H20B	120.0°	90.0°
H20	C20	H20A	H20B	120.0°	90.0°
H22	C22	H22A	H22B	120.0°	90.0°
H23	C23	H23A	H23B	120.0°	90.0°
O3'	C3'	C4'	H3'	119.7°	90.0°
O3'	C3'	C4'	C5'	93.0°	90.0°
O3'	C3'	C4'	H4'	25.7°	90.0°
O3'	C3'	C4'	O4'	148.0°	90.0°
C4'	C3'	O3'	HO3'	64.1°	90.0°
C3'	C4'	C5'	H4'	122.3°	90.0°
C3'	C4'	C5'	O4'	115.1°	90.0°
C3'	C4'	H4'	O4'	117.3°	90.0°
C3'	C4'	C5'	O5'	56.3°	90.0°
C3'	C4'	C5'	H5'	176.3°	90.0°
C3'	C4'	C5'	H5'A	63.7°	90.0°
H3'	C3'	O3'	HO3'	58.0°	90.0°
H3'	C3'	C4'	C5'	26.8°	90.0°
H3'	C3'	C4'	H4'	145.5°	90.0°
H3'	C3'	C4'	O4'	92.2°	90.0°
C5'	C4'	H4'	O4'	121.1°	90.0°
C4'	C5'	O5'	H5'	120.0°	90.0°
C4'	C5'	O5'	H5'A	120.0°	90.0°
C4'	C5'	H5'	H5'A	120.6°	90.0°
C4'	C5'	O5'	P	176.2°	90.0°
H4'	C4'	C5'	O5'	178.6°	90.0°
H4'	C4'	C5'	H5'	61.4°	90.0°
H4'	C4'	C5'	H5'A	58.6°	90.0°
O4'	C4'	C5'	O5'	58.8°	90.0°
O4'	C4'	C5'	H5'	61.2°	90.0°
O4'	C4'	C5'	H5'A	178.8°	90.0°
O5'	C5'	H5'	H5'A	120.6°	90.0°
C5'	O5'	P	OP2	176.9°	90.0°
H5'	C5'	O5'	P	56.2°	90.0°
H5'A	C5'	O5'	P	63.8°	90.0°
O5'	P	OP1	HOP1	122.9°	90.0°
O5'	P	OP3	HOP3	113.1°	90.0°
HOP1	OP1	P	OP2	0.0°	90.0°
OP2	P	OP3	HOP3	0.0°	90.0°

Definition date:	2010-10-19
Last modified:	2020-06-17
Release status:	REL
Processing site:	RCSB
Derived from:	3OT0