EW3
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP1 | P | doub | 1.48Å | 1.54Å | |
| P | OP2 | sing | 1.61Å | 1.51Å | |
| P | O5' | sing | 1.61Å | 1.58Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| C3' | C4' | sing | 1.54Å | 1.52Å | |
| C3' | C2' | sing | 1.54Å | 1.52Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C2' | F2 | sing | 1.40Å | 1.35Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| O4' | C1' | sing | 1.44Å | 1.45Å | |
| C1' | N1 | sing | 1.46Å | 1.48Å | |
| C6 | N1 | sing | 1.46Å | 1.46Å | |
| C6 | C5 | sing | 1.53Å | 1.54Å | |
| N1 | C2 | sing | 1.34Å | 1.34Å | |
| C5 | C4 | sing | 1.51Å | 1.52Å | |
| C2 | O2 | doub | 1.22Å | 1.22Å | |
| C2 | N3 | sing | 1.34Å | 1.35Å | |
| C4 | N3 | sing | 1.35Å | 1.34Å | |
| C4 | O4 | doub | 1.21Å | 1.22Å | |
| P | O1 | sing | 1.61Å | 1.62Å | |
| C2' | H1 | sing | 1.09Å | 1.10Å | |
| C3' | H2 | sing | 1.09Å | 1.10Å | |
| O3' | H3 | sing | 0.97Å | 0.95Å | |
| C1' | H4 | sing | 1.09Å | 1.10Å | |
| C4' | H5 | sing | 1.09Å | 1.10Å | |
| C5' | H6 | sing | 1.09Å | 1.10Å | |
| C5' | H7 | sing | 1.09Å | 1.10Å | |
| OP2 | H8 | sing | 0.97Å | 0.95Å | |
| N3 | H9 | sing | 0.97Å | 1.00Å | |
| C5 | H10 | sing | 1.09Å | 1.10Å | |
| C5 | H11 | sing | 1.09Å | 1.10Å | |
| C6 | H12 | sing | 1.09Å | 1.10Å | |
| C6 | H13 | sing | 1.09Å | 1.10Å | |
| O1 | H14 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 118.1° | 109.5° |
| OP1 | P | O5' | 105.0° | 109.5° |
| OP1 | P | O1 | 110.5° | 109.5° |
| OP2 | P | O5' | 113.0° | 109.4° |
| OP2 | P | O1 | 106.6° | 109.5° |
| P | OP2 | H8 | 109.5° | 114.0° |
| P | O5' | C5' | 114.8° | 123.0° |
| O5' | P | O1 | 102.6° | 109.5° |
| O5' | C5' | C4' | 110.8° | 109.5° |
| O5' | C5' | H6 | 109.1° | 109.5° |
| O5' | C5' | H7 | 109.2° | 109.5° |
| C5' | C4' | C3' | 114.2° | 110.4° |
| C5' | C4' | O4' | 105.9° | 110.4° |
| C5' | C4' | H5 | 109.5° | 110.4° |
| C4' | C5' | H6 | 109.1° | 109.5° |
| C4' | C5' | H7 | 109.1° | 109.5° |
| O3' | C3' | C4' | 109.1° | 110.5° |
| O3' | C3' | C2' | 111.8° | 110.5° |
| O3' | C3' | H2 | 112.1° | 110.4° |
| C3' | O3' | H3 | 109.5° | 114.0° |
| C4' | C3' | C2' | 101.6° | 104.1° |
| C3' | C4' | O4' | 106.8° | 104.8° |
| C4' | C3' | H2 | 110.9° | 110.6° |
| C3' | C4' | H5 | 109.5° | 110.4° |
| C3' | C2' | F2 | 112.0° | 110.5° |
| C3' | C2' | C1' | 102.0° | 104.1° |
| C3' | C2' | H1 | 109.6° | 110.6° |
| C2' | C3' | H2 | 111.0° | 110.6° |
| C4' | O4' | C1' | 109.2° | 105.3° |
| O4' | C4' | H5 | 110.9° | 110.4° |
| F2 | C2' | C1' | 111.2° | 110.6° |
| F2 | C2' | H1 | 112.1° | 110.4° |
| C2' | C1' | O4' | 105.7° | 104.8° |
| C2' | C1' | N1 | 117.1° | 110.4° |
| C1' | C2' | H1 | 109.4° | 110.5° |
| C2' | C1' | H4 | 107.4° | 110.3° |
| O4' | C1' | N1 | 110.2° | 110.4° |
| O4' | C1' | H4 | 108.3° | 110.5° |
| C1' | N1 | C6 | 119.5° | 119.5° |
| C1' | N1 | C2 | 119.0° | 119.6° |
| N1 | C1' | H4 | 107.9° | 110.4° |
| N1 | C6 | C5 | 102.8° | 109.4° |
| C6 | N1 | C2 | 120.7° | 120.9° |
| N1 | C6 | H12 | 111.1° | 109.4° |
| N1 | C6 | H13 | 111.1° | 109.5° |
| C6 | C5 | C4 | 109.7° | 109.1° |
| C6 | C5 | H10 | 109.4° | 109.6° |
| C6 | C5 | H11 | 109.4° | 109.5° |
| C5 | C6 | H12 | 111.1° | 109.7° |
| C5 | C6 | H13 | 111.1° | 109.5° |
| N1 | C2 | O2 | 122.9° | 119.2° |
| N1 | C2 | N3 | 116.0° | 121.6° |
| C5 | C4 | N3 | 119.1° | 120.0° |
| C5 | C4 | O4 | 119.1° | 120.1° |
| C4 | C5 | H10 | 109.4° | 109.5° |
| C4 | C5 | H11 | 109.4° | 109.5° |
| O2 | C2 | N3 | 121.0° | 119.2° |
| C2 | N3 | C4 | 123.4° | 121.0° |
| C2 | N3 | H9 | 118.3° | 119.6° |
| N3 | C4 | O4 | 121.9° | 120.0° |
| C4 | N3 | H9 | 118.3° | 119.5° |
| P | O1 | H14 | 109.5° | 114.0° |
| H6 | C5' | H7 | 109.5° | 109.4° |
| H10 | C5 | H11 | 109.5° | 109.5° |
| H12 | C6 | H13 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 123.1° | 120.0° |
| OP1 | P | OP2 | O1 | 125.0° | 120.0° |
| OP1 | P | O5' | O1 | 115.6° | 120.1° |
| OP1 | P | O5' | C5' | 175.0° | 55.1° |
| OP1 | P | OP2 | H8 | 0.0° | 60.0° |
| OP1 | P | O1 | H14 | 0.0° | 180.0° |
| OP2 | P | O5' | O1 | 114.3° | 120.0° |
| OP2 | P | O5' | C5' | 54.9° | 175.0° |
| OP2 | P | O1 | H14 | 129.5° | 60.0° |
| P | O5' | C5' | C4' | 169.1° | 180.0° |
| P | O5' | C5' | H6 | 48.9° | 60.0° |
| P | O5' | C5' | H7 | 70.7° | 60.0° |
| O5' | P | OP2 | H8 | 123.1° | 180.0° |
| O5' | P | O1 | H14 | 111.5° | 60.0° |
| O5' | C5' | C4' | H6 | 120.2° | 120.0° |
| O5' | C5' | C4' | H7 | 120.2° | 120.1° |
| O5' | C5' | C4' | C3' | 56.6° | 175.0° |
| O5' | C5' | C4' | O4' | 173.8° | 69.6° |
| C5' | O5' | P | O1 | 59.4° | 65.0° |
| O5' | C5' | C4' | H5 | 66.6° | 52.7° |
| O5' | C5' | H6 | H7 | 119.4° | 120.0° |
| C5' | C4' | C3' | O3' | 157.7° | 98.5° |
| C5' | C4' | C3' | O4' | 116.7° | 118.8° |
| C5' | C4' | C3' | H5 | 123.2° | 122.4° |
| C5' | C4' | C3' | C2' | 84.2° | 142.8° |
| C5' | C4' | O4' | H5 | 118.7° | 122.3° |
| C5' | C4' | O4' | C1' | 108.2° | 159.4° |
| C5' | C4' | C3' | H2 | 33.8° | 24.0° |
| C4' | C5' | H6 | H7 | 119.4° | 120.0° |
| O3' | C3' | C4' | C2' | 118.1° | 118.7° |
| O3' | C3' | C4' | H2 | 123.9° | 122.6° |
| O3' | C3' | C2' | H2 | 125.9° | 122.6° |
| O3' | C3' | C4' | O4' | 85.6° | 142.6° |
| O3' | C3' | C2' | F2 | 40.2° | 0.0° |
| O3' | C3' | C2' | C1' | 78.7° | 118.7° |
| O3' | C3' | C2' | H1 | 165.4° | 122.6° |
| O3' | C3' | C4' | H5 | 34.5° | 23.8° |
| C4' | C3' | C2' | H2 | 117.9° | 118.8° |
| C3' | C4' | O4' | H5 | 119.2° | 118.8° |
| C4' | C3' | C2' | F2 | 156.4° | 118.7° |
| C4' | C3' | C2' | C1' | 37.5° | 0.0° |
| C3' | C4' | O4' | C1' | 13.8° | 40.5° |
| C4' | C3' | C2' | H1 | 78.4° | 118.7° |
| C4' | C3' | O3' | H3 | 180.0° | 180.0° |
| C3' | C4' | C5' | H6 | 176.9° | 55.0° |
| C3' | C4' | C5' | H7 | 63.6° | 65.0° |
| C2' | C3' | C4' | O4' | 32.5° | 24.0° |
| C3' | C2' | F2 | C1' | 113.4° | 114.7° |
| C3' | C2' | F2 | H1 | 123.7° | 122.7° |
| C3' | C2' | C1' | H1 | 116.0° | 118.8° |
| C3' | C2' | C1' | O4' | 30.5° | 23.9° |
| C3' | C2' | C1' | N1 | 153.6° | 142.8° |
| C2' | C3' | O3' | H3 | 68.5° | 65.3° |
| C3' | C2' | C1' | H4 | 85.0° | 95.0° |
| C2' | C3' | C4' | H5 | 152.6° | 94.8° |
| C4' | O4' | C1' | C2' | 10.6° | 40.5° |
| C4' | O4' | C1' | N1 | 138.0° | 159.3° |
| O4' | C4' | C3' | H2 | 150.5° | 94.8° |
| C4' | O4' | C1' | H4 | 104.2° | 78.3° |
| O4' | C4' | C5' | H6 | 66.0° | 170.4° |
| O4' | C4' | C5' | H7 | 53.6° | 50.4° |
| F2 | C2' | C1' | H1 | 124.4° | 122.5° |
| F2 | C2' | C1' | O4' | 150.1° | 142.6° |
| F2 | C2' | C1' | N1 | 86.8° | 98.5° |
| F2 | C2' | C3' | H2 | 85.7° | 122.5° |
| F2 | C2' | C1' | H4 | 34.6° | 23.7° |
| C2' | C1' | O4' | N1 | 127.4° | 118.9° |
| C2' | C1' | O4' | H4 | 114.8° | 118.8° |
| C2' | C1' | N1 | H4 | 121.2° | 122.2° |
| C2' | C1' | N1 | C6 | 48.5° | 114.7° |
| C2' | C1' | N1 | C2 | 141.2° | 65.0° |
| C1' | C2' | C3' | H2 | 155.4° | 118.8° |
| O4' | C1' | N1 | H4 | 118.1° | 122.4° |
| O4' | C1' | N1 | C6 | 72.2° | 129.9° |
| O4' | C1' | N1 | C2 | 98.1° | 50.4° |
| O4' | C1' | C2' | H1 | 85.5° | 94.8° |
| C1' | O4' | C4' | H5 | 133.1° | 78.3° |
| C1' | N1 | C6 | C2 | 170.1° | 179.7° |
| C1' | N1 | C6 | C5 | 109.9° | 144.1° |
| C1' | N1 | C2 | O2 | 42.5° | 5.7° |
| C1' | N1 | C2 | N3 | 134.5° | 174.3° |
| N1 | C1' | C2' | H1 | 37.6° | 24.0° |
| C1' | N1 | C6 | H12 | 9.1° | 95.8° |
| C1' | N1 | C6 | H13 | 131.2° | 24.1° |
| N1 | C6 | C5 | H12 | 118.9° | 120.0° |
| N1 | C6 | C5 | H13 | 118.9° | 119.9° |
| N1 | C6 | C5 | C4 | 50.9° | 47.0° |
| C6 | N1 | C2 | O2 | 147.3° | 174.0° |
| C6 | N1 | C2 | N3 | 35.7° | 6.0° |
| C6 | N1 | C1' | H4 | 169.7° | 7.5° |
| N1 | C6 | C5 | H10 | 69.2° | 73.0° |
| N1 | C6 | C5 | H11 | 170.9° | 166.8° |
| N1 | C6 | H12 | H13 | 123.1° | 120.0° |
| C5 | C6 | N1 | C2 | 60.3° | 36.2° |
| C6 | C5 | C4 | H10 | 120.0° | 120.0° |
| C6 | C5 | C4 | H11 | 120.0° | 119.8° |
| C6 | C5 | C4 | N3 | 27.1° | 34.4° |
| C6 | C5 | C4 | O4 | 152.4° | 145.6° |
| C6 | C5 | H10 | H11 | 119.9° | 120.1° |
| C5 | C6 | H12 | H13 | 123.1° | 120.1° |
| N1 | C2 | O2 | N3 | 176.9° | 180.0° |
| N1 | C2 | N3 | C4 | 1.2° | 12.0° |
| C2 | N1 | C1' | H4 | 20.0° | 172.8° |
| N1 | C2 | N3 | H9 | 178.8° | 168.0° |
| C2 | N1 | C6 | H12 | 179.2° | 83.9° |
| C2 | N1 | C6 | H13 | 58.6° | 156.1° |
| C5 | C4 | N3 | C2 | 0.5° | 4.5° |
| C5 | C4 | N3 | O4 | 179.5° | 180.0° |
| C5 | C4 | N3 | H9 | 179.5° | 175.6° |
| C4 | C5 | H10 | H11 | 119.9° | 120.1° |
| C4 | C5 | C6 | H12 | 169.8° | 73.0° |
| C4 | C5 | C6 | H13 | 68.0° | 166.9° |
| O2 | C2 | N3 | C4 | 178.3° | 168.0° |
| O2 | C2 | N3 | H9 | 1.7° | 12.0° |
| C2 | N3 | C4 | H9 | 180.0° | 180.0° |
| C2 | N3 | C4 | O4 | 180.0° | 175.5° |
| N3 | C4 | C5 | H10 | 93.0° | 85.7° |
| N3 | C4 | C5 | H11 | 147.1° | 154.2° |
| O4 | C4 | N3 | H9 | 0.0° | 4.4° |
| O4 | C4 | C5 | H10 | 87.5° | 94.4° |
| O4 | C4 | C5 | H11 | 32.4° | 25.8° |
| O1 | P | OP2 | H8 | 125.0° | 60.0° |
| H1 | C2' | C3' | H2 | 39.5° | 0.1° |
| H1 | C2' | C1' | H4 | 159.0° | 146.2° |
| H2 | C3' | O3' | H3 | 56.8° | 57.3° |
| H2 | C3' | C4' | H5 | 89.4° | 146.4° |
| H5 | C4' | C5' | H6 | 53.6° | 67.3° |
| H5 | C4' | C5' | H7 | 173.2° | 172.7° |
| H10 | C5 | C6 | H12 | 49.7° | 167.0° |
| H10 | C5 | C6 | H13 | 171.9° | 46.9° |
| H11 | C5 | C6 | H12 | 70.2° | 46.9° |
| H11 | C5 | C6 | H13 | 52.0° | 73.2° |
