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Summary Geometry Related PDB entries

EUG

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	doub	1.40Å	1.40Å	Aromatic
C1	C6	sing	1.39Å	1.40Å	Aromatic
C1	C7	sing	1.48Å	1.46Å
C2	C3	sing	1.38Å	1.40Å	Aromatic
C3	C4	doub	1.39Å	1.39Å	Aromatic
C3	O3	sing	1.36Å	1.37Å
C4	C5	sing	1.39Å	1.39Å	Aromatic
C4	O4	sing	1.36Å	1.37Å
C5	C6	doub	1.38Å	1.39Å	Aromatic
C7	C8	doub	1.33Å	1.31Å
C9	O3	sing	1.43Å	1.38Å
C8	C10	sing	1.51Å	1.54Å
C2	H2	sing	1.08Å	1.08Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
C7	H7	sing	1.08Å	1.08Å
C8	H81	sing	1.08Å	1.08Å
C9	H91	sing	1.09Å	1.10Å
C9	H92	sing	1.09Å	1.10Å
C9	H93	sing	1.09Å	1.10Å
O4	HO4	sing	0.97Å	0.95Å
C10	H10	sing	1.09Å	1.10Å
C10	H11	sing	1.09Å	1.10Å
C10	H12	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	C6	118.1°	119.9°
C2	C1	C7	120.4°	120.0°
C1	C2	C3	120.5°	119.9°
C1	C2	H2	119.8°	120.1°
C6	C1	C7	121.5°	120.1°
C1	C6	C5	122.0°	120.0°
C1	C6	H6	119.0°	120.0°
C1	C7	C8	119.9°	120.0°
C1	C7	H7	120.0°	120.1°
C2	C3	C4	120.0°	120.0°
C2	C3	O3	121.5°	120.0°
C3	C2	H2	119.8°	120.1°
C4	C3	O3	118.4°	120.0°
C3	C4	C5	120.3°	120.1°
C3	C4	O4	119.6°	119.9°
C3	O3	C9	128.8°	117.0°
C5	C4	O4	120.0°	120.0°
C4	C5	C6	119.1°	120.1°
C4	C5	H5	120.4°	119.9°
C4	O4	HO4	109.5°	114.0°
C6	C5	H5	120.5°	119.9°
C5	C6	H6	119.0°	120.0°
C7	C8	C10	119.1°	120.0°
C8	C7	H7	120.0°	120.0°
C7	C8	H81	120.4°	120.0°
O3	C9	H91	109.5°	109.5°
O3	C9	H92	109.5°	109.4°
O3	C9	H93	109.4°	109.5°
C10	C8	H81	120.5°	120.0°
C8	C10	H10	109.5°	109.5°
C8	C10	H11	109.5°	109.5°
C8	C10	H12	109.5°	109.5°
H91	C9	H92	109.5°	109.5°
H91	C9	H93	109.5°	109.5°
H92	C9	H93	109.5°	109.5°
H10	C10	H11	109.4°	109.4°
H10	C10	H12	109.5°	109.5°
H11	C10	H12	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	C6	C7	178.5°	179.7°
C1	C2	C3	H2	180.0°	179.9°
C1	C2	C3	C4	2.1°	0.0°
C1	C2	C3	O3	179.8°	180.0°
C2	C1	C6	C5	0.2°	0.1°
C2	C1	C7	C8	163.4°	180.0°
C2	C1	C6	H6	179.8°	180.0°
C2	C1	C7	H7	16.7°	0.0°
C6	C1	C2	C3	1.2°	0.0°
C1	C6	C5	C4	0.2°	0.1°
C1	C6	C5	H6	180.0°	179.9°
C6	C1	C7	C8	15.1°	0.3°
C6	C1	C2	H2	178.8°	180.0°
C1	C6	C5	H5	179.8°	180.0°
C6	C1	C7	H7	164.9°	179.7°
C7	C1	C2	C3	177.3°	179.7°
C7	C1	C6	C5	178.3°	179.8°
C1	C7	C8	H7	180.0°	179.9°
C1	C7	C8	C10	176.8°	180.0°
C7	C1	C2	H2	2.7°	0.3°
C7	C1	C6	H6	1.7°	0.3°
C1	C7	C8	H81	3.2°	0.1°
C2	C3	C4	O3	177.7°	180.0°
C2	C3	C4	C5	2.1°	0.1°
C2	C3	C4	O4	178.6°	180.0°
C2	C3	O3	C9	101.6°	0.0°
C3	C4	C5	O4	179.3°	179.9°
C3	C4	C5	C6	1.2°	0.1°
C4	C3	O3	C9	80.7°	180.0°
C4	C3	C2	H2	177.9°	180.0°
C3	C4	C5	H5	178.8°	180.0°
C3	C4	O4	HO4	180.0°	90.0°
O3	C3	C4	C5	179.8°	179.9°
O3	C3	C4	O4	0.9°	0.0°
O3	C3	C2	H2	0.2°	0.0°
C3	O3	C9	H91	180.0°	180.0°
C3	O3	C9	H92	60.0°	60.0°
C3	O3	C9	H93	60.0°	60.0°
C4	C5	C6	H5	180.0°	179.9°
C4	C5	C6	H6	179.8°	179.9°
C5	C4	O4	HO4	0.7°	90.1°
O4	C4	C5	C6	179.5°	180.0°
O4	C4	C5	H5	0.5°	0.1°
C7	C8	C10	H81	180.0°	179.9°
C7	C8	C10	H10	180.0°	60.0°
C7	C8	C10	H11	60.0°	60.0°
C7	C8	C10	H12	60.0°	180.0°
O3	C9	H91	H92	120.0°	120.0°
O3	C9	H91	H93	120.0°	120.0°
O3	C9	H92	H93	120.0°	120.0°
C10	C8	C7	H7	3.2°	0.1°
C8	C10	H10	H11	120.0°	120.1°
C8	C10	H10	H12	120.0°	120.0°
C8	C10	H11	H12	120.0°	120.1°
H5	C5	C6	H6	0.2°	0.0°
H7	C7	C8	H81	176.9°	NaN°
H81	C8	C10	H10	0.0°	120.1°
H81	C8	C10	H11	120.0°	120.0°
H81	C8	C10	H12	120.0°	0.1°
H91	C9	H92	H93	120.0°	120.0°
H10	C10	H11	H12	120.0°	119.9°

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PDB entries from 2024-09-04

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