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Summary Geometry Related PDB entries

EUF

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
S03	C02	sing	1.81Å	1.83Å
C02	C01	sing	1.53Å	1.54Å
C01	H1	sing	1.09Å	1.10Å
C01	H2	sing	1.09Å	1.10Å
C01	H3	sing	1.09Å	1.10Å
C02	H4	sing	1.09Å	1.10Å
C02	H5	sing	1.09Å	1.10Å
S03	S1	sing	2.06Å	52.60Å
S1	C5	sing	1.76Å	0.00Å
C5	N1	doub	1.29Å	0.00Å	Aromatic
N1	C2	sing	1.35Å	0.00Å	Aromatic
C2	C3	sing	1.40Å	0.00Å	Aromatic
C3	S2	sing	1.76Å	0.00Å	Aromatic
S2	C5	sing	1.76Å	0.00Å	Aromatic
C3	C1	doub	1.39Å	0.00Å	Aromatic
C1	C4	sing	1.38Å	0.00Å	Aromatic
C4	C6	doub	1.39Å	0.00Å	Aromatic
C6	C7	sing	1.37Å	0.00Å	Aromatic
C7	C2	doub	1.41Å	0.00Å	Aromatic
C1	H6	sing	1.08Å	0.00Å
C4	H7	sing	1.08Å	0.00Å
C6	H8	sing	1.08Å	0.00Å
C7	H9	sing	1.08Å	0.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
S03	C02	C01	112.2°	109.5°
S03	C02	H4	108.8°	109.5°
S03	C02	H5	108.8°	109.5°
C02	S03	S1	88.9°	103.0°
C02	C01	H1	109.5°	109.5°
C02	C01	H2	109.5°	109.5°
C02	C01	H3	109.5°	109.5°
C01	C02	H4	108.8°	109.5°
C01	C02	H5	108.8°	109.5°
H1	C01	H2	109.5°	109.5°
H1	C01	H3	109.5°	109.5°
H2	C01	H3	109.5°	109.5°
H4	C02	H5	109.5°	109.5°
S03	S1	C5	90.0°	100.0°
S1	C5	N1	90.0°	124.8°
S1	C5	S2	90.0°	124.8°
C5	N1	C2	90.0°	117.9°
N1	C5	S2	90.0°	110.3°
N1	C2	C3	90.0°	112.9°
N1	C2	C7	90.0°	128.7°
C2	C3	S2	90.0°	108.5°
C2	C3	C1	90.0°	120.4°
C3	C2	C7	90.0°	118.4°
C3	S2	C5	90.0°	90.4°
S2	C3	C1	90.0°	131.2°
C3	C1	C4	90.0°	120.2°
C3	C1	H6	90.0°	119.9°
C1	C4	C6	90.0°	119.9°
C4	C1	H6	90.0°	119.9°
C1	C4	H7	90.0°	120.0°
C4	C6	C7	90.0°	120.6°
C6	C4	H7	90.0°	120.0°
C4	C6	H8	90.0°	119.7°
C6	C7	C2	90.0°	120.4°
C7	C6	H8	90.0°	119.7°
C6	C7	H9	90.0°	119.8°
C2	C7	H9	90.0°	119.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
S03	C02	C01	H4	120.4°	120.0°
S03	C02	C01	H5	120.4°	120.0°
S03	C02	C01	H1	180.0°	180.0°
S03	C02	C01	H2	60.0°	60.0°
S03	C02	C01	H3	60.0°	60.0°
S03	C02	H4	H5	118.7°	120.0°
C02	S03	S1	C5	90.0°	85.0°
C02	C01	H1	H2	120.0°	120.0°
C02	C01	H1	H3	120.0°	120.0°
C02	C01	H2	H3	120.0°	120.0°
C01	C02	H4	H5	118.8°	120.0°
C01	C02	S03	S1	53.5°	70.0°
H1	C01	H2	H3	120.0°	120.0°
H1	C01	C02	H4	59.6°	60.0°
H1	C01	C02	H5	59.6°	60.0°
H2	C01	C02	H4	179.6°	60.0°
H2	C01	C02	H5	60.4°	180.0°
H3	C01	C02	H4	60.4°	180.0°
H3	C01	C02	H5	179.6°	60.0°
H4	C02	S03	S1	173.9°	50.0°
H5	C02	S03	S1	66.9°	170.0°
S03	S1	C5	N1	90.0°	90.0°
S03	S1	C5	S2	90.0°	90.3°
S1	C5	N1	S2	90.0°	179.7°
S1	C5	N1	C2	90.0°	180.0°
S1	C5	S2	C3	90.0°	179.9°
C5	N1	C2	C3	90.0°	0.0°
N1	C5	S2	C3	90.0°	0.4°
C5	N1	C2	C7	90.0°	180.0°
N1	C2	C3	C7	90.0°	180.0°
N1	C2	C3	S2	90.0°	0.2°
C2	N1	C5	S2	90.0°	0.3°
N1	C2	C3	C1	90.0°	179.9°
N1	C2	C7	C6	90.0°	179.9°
N1	C2	C7	H9	90.0°	0.0°
C2	C3	S2	C1	90.0°	179.7°
C2	C3	S2	C5	90.0°	0.3°
C2	C3	C1	C4	90.0°	0.0°
C3	C2	C7	C6	90.0°	0.1°
C2	C3	C1	H6	90.0°	180.0°
C3	C2	C7	H9	90.0°	180.0°
S2	C3	C1	C4	90.0°	179.7°
S2	C3	C2	C7	90.0°	179.7°
S2	C3	C1	H6	90.0°	0.4°
C5	S2	C3	C1	90.0°	180.0°
C3	C1	C4	H6	90.0°	180.0°
C3	C1	C4	C6	90.0°	0.1°
C1	C3	C2	C7	90.0°	0.0°
C3	C1	C4	H7	90.0°	180.0°
C1	C4	C6	H7	90.0°	179.9°
C1	C4	C6	C7	90.0°	0.1°
C1	C4	C6	H8	90.0°	180.0°
C4	C6	C7	H8	90.0°	179.9°
C4	C6	C7	C2	90.0°	0.1°
C6	C4	C1	H6	90.0°	180.0°
C4	C6	C7	H9	90.0°	180.0°
C6	C7	C2	H9	90.0°	179.9°
C7	C6	C4	H7	90.0°	180.0°
C2	C7	C6	H8	90.0°	180.0°
H6	C1	C4	H7	90.0°	0.0°
H7	C4	C6	H8	90.0°	0.0°
H8	C6	C7	H9	90.0°	0.1°

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PDB entries from 2024-07-31

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