English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

ETX

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C2	O2	sing	1.43Å	1.44Å
C2	C1	sing	1.53Å	1.49Å
C2	H21	sing	1.09Å	1.12Å
C2	H22	sing	1.09Å	1.11Å
O2	C3	sing	1.43Å	1.43Å
C3	C4	sing	1.53Å	1.51Å
C3	H31	sing	1.09Å	1.12Å
C3	H32	sing	1.09Å	1.12Å
C4	H41	sing	1.09Å	1.12Å
C4	H42	sing	1.09Å	1.11Å
C4	H43	sing	1.09Å	1.11Å
O1	C1	sing	1.43Å	1.42Å
O1	HO1	sing	0.97Å	0.95Å
C1	H11	sing	1.09Å	1.11Å
C1	H12	sing	1.09Å	1.12Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O2	C2	C1	109.1°	109.5°
O2	C2	H21	112.4°	109.4°
O2	C2	H22	112.4°	109.5°
C2	O2	C3	114.3°	106.9°
C1	C2	H21	112.4°	109.4°
C1	C2	H22	112.4°	109.5°
C2	C1	O1	111.5°	109.5°
C2	C1	H11	111.4°	109.5°
C2	C1	H12	111.4°	109.5°
H21	C2	H22	98.0°	109.5°
O2	C3	C4	109.8°	109.5°
O2	C3	H31	112.1°	109.4°
O2	C3	H32	112.1°	109.4°
C4	C3	H31	112.1°	109.5°
C4	C3	H32	112.1°	109.5°
C3	C4	H41	109.8°	109.5°
C3	C4	H42	112.1°	109.5°
C3	C4	H43	112.1°	109.4°
H31	C3	H32	98.3°	109.5°
H41	C4	H42	112.0°	109.5°
H41	C4	H43	112.1°	109.4°
H42	C4	H43	98.4°	109.5°
C1	O1	HO1	111.5°	106.8°
O1	C1	H11	111.5°	109.5°
O1	C1	H12	111.4°	109.4°
H11	C1	H12	99.0°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O2	C2	C1	H21	125.3°	119.9°
O2	C2	C1	H22	125.3°	120.1°
O2	C2	H21	H22	118.3°	120.0°
C2	O2	C3	C4	105.9°	180.0°
C2	O2	C3	H31	19.3°	60.1°
C2	O2	C3	H32	128.8°	59.9°
O2	C2	C1	O1	164.4°	59.9°
O2	C2	C1	H11	70.3°	180.0°
O2	C2	C1	H12	39.2°	60.0°
C1	C2	H21	H22	118.3°	120.0°
C1	C2	O2	C3	177.8°	180.0°
C2	C1	O1	H11	125.2°	120.1°
C2	C1	O1	H12	125.2°	120.0°
C2	C1	O1	HO1	180.0°	180.0°
C2	C1	H11	H12	117.3°	120.0°
H21	C2	O2	C3	56.9°	60.1°
H21	C2	C1	O1	39.1°	60.0°
H21	C2	C1	H11	164.4°	60.0°
H21	C2	C1	H12	86.1°	180.0°
H22	C2	O2	C3	52.5°	59.9°
H22	C2	C1	O1	70.3°	180.0°
H22	C2	C1	H11	54.9°	59.9°
H22	C2	C1	H12	164.4°	60.1°
O2	C3	C4	H31	125.3°	119.9°
O2	C3	C4	H32	125.3°	120.0°
O2	C3	H31	H32	118.0°	119.9°
O2	C3	C4	H41	180.0°	180.0°
O2	C3	C4	H42	54.8°	59.9°
O2	C3	C4	H43	54.8°	60.0°
C4	C3	H31	H32	118.0°	120.0°
C3	C4	H41	H42	125.2°	120.1°
C3	C4	H41	H43	125.3°	119.9°
C3	C4	H42	H43	118.0°	119.9°
H31	C3	C4	H41	54.7°	60.1°
H31	C3	C4	H42	179.9°	60.0°
H31	C3	C4	H43	70.5°	180.0°
H32	C3	C4	H41	54.7°	59.9°
H32	C3	C4	H42	70.5°	180.0°
H32	C3	C4	H43	180.0°	60.0°
H41	C4	H42	H43	118.0°	120.0°
O1	C1	H11	H12	117.4°	119.9°
HO1	O1	C1	H11	54.8°	59.9°
HO1	O1	C1	H12	54.8°	60.0°

225946

PDB entries from 2024-10-09

PDB statistics

PDBj update info

Contact PDBj

numon