ERP
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O5' | C5' | sing | 1.43Å | 1.40Å | |
C5' | C4' | sing | 1.53Å | 1.39Å | |
C4' | C3' | sing | 1.54Å | 1.53Å | |
C4' | O4' | sing | 1.44Å | 1.47Å | |
O3' | C3' | sing | 1.43Å | 1.46Å | |
C3' | C2' | sing | 1.55Å | 1.27Å | |
O4' | C1' | sing | 1.44Å | 1.24Å | |
C1' | C2' | sing | 1.55Å | 1.61Å | |
C1' | N9 | sing | 1.46Å | 1.40Å | |
C2' | O2' | sing | 1.43Å | 1.41Å | |
N9 | C4 | sing | 1.37Å | 1.32Å | Aromatic |
N9 | C8 | sing | 1.36Å | 1.28Å | Aromatic |
N3 | C4 | doub | 1.33Å | 1.32Å | Aromatic |
N3 | C2 | sing | 1.32Å | 1.31Å | Aromatic |
C4 | C5 | sing | 1.41Å | 1.34Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.29Å | Aromatic |
C2 | N1 | doub | 1.32Å | 1.30Å | Aromatic |
C5 | N7 | sing | 1.35Å | 1.30Å | Aromatic |
C5 | C6 | doub | 1.41Å | 1.42Å | Aromatic |
N1 | C6 | sing | 1.33Å | 1.29Å | Aromatic |
C6 | C19 | sing | 1.43Å | 1.57Å | |
C19 | C20 | trip | 1.17Å | 1.15Å | |
C20 | C21 | sing | 1.43Å | 1.55Å | |
C21 | C26 | doub | 1.40Å | 1.37Å | Aromatic |
C21 | C22 | sing | 1.40Å | 1.40Å | Aromatic |
C26 | C25 | sing | 1.38Å | 1.41Å | Aromatic |
C22 | C23 | doub | 1.38Å | 1.41Å | Aromatic |
C25 | C24 | doub | 1.40Å | 1.39Å | Aromatic |
C23 | C24 | sing | 1.40Å | 1.37Å | Aromatic |
C24 | C27 | sing | 1.48Å | 1.54Å | |
C32 | C27 | doub | 1.39Å | 1.41Å | Aromatic |
C32 | C31 | sing | 1.38Å | 1.36Å | Aromatic |
C27 | C28 | sing | 1.39Å | 1.38Å | Aromatic |
C31 | C30 | doub | 1.38Å | 1.38Å | Aromatic |
C28 | C29 | doub | 1.38Å | 1.37Å | Aromatic |
C30 | C29 | sing | 1.38Å | 1.41Å | Aromatic |
C8 | H1 | sing | 1.08Å | 1.08Å | |
C22 | H2 | sing | 1.08Å | 1.08Å | |
C26 | H3 | sing | 1.08Å | 1.08Å | |
C28 | H4 | sing | 1.08Å | 1.08Å | |
C1' | H5 | sing | 1.09Å | 1.10Å | |
C2 | H6 | sing | 1.08Å | 1.08Å | |
C2' | H7 | sing | 1.09Å | 1.10Å | |
C23 | H8 | sing | 1.08Å | 1.08Å | |
C25 | H9 | sing | 1.08Å | 1.08Å | |
C29 | H10 | sing | 1.08Å | 1.08Å | |
C3' | H11 | sing | 1.09Å | 1.10Å | |
C30 | H12 | sing | 1.08Å | 1.08Å | |
C31 | H13 | sing | 1.08Å | 1.08Å | |
C32 | H14 | sing | 1.08Å | 1.08Å | |
C4' | H15 | sing | 1.09Å | 1.10Å | |
C5' | H16 | sing | 1.09Å | 1.10Å | |
C5' | H17 | sing | 1.09Å | 1.10Å | |
O2' | H18 | sing | 0.97Å | 0.95Å | |
O3' | H19 | sing | 0.97Å | 0.95Å | |
O5' | H20 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O5' | C5' | C4' | 110.5° | 109.4° |
O5' | C5' | H16 | 109.2° | 109.5° |
O5' | C5' | H17 | 109.2° | 109.4° |
C5' | O5' | H20 | 109.5° | 114.0° |
C5' | C4' | C3' | 109.5° | 109.9° |
C5' | C4' | O4' | 113.1° | 109.9° |
C5' | C4' | H15 | 112.2° | 110.0° |
C4' | C5' | H16 | 109.2° | 109.5° |
C4' | C5' | H17 | 109.2° | 109.5° |
C3' | C4' | O4' | 100.5° | 107.3° |
C4' | C3' | O3' | 103.9° | 110.6° |
C4' | C3' | C2' | 106.9° | 104.2° |
C4' | C3' | H11 | 106.6° | 110.5° |
C3' | C4' | H15 | 110.0° | 109.9° |
C4' | O4' | C1' | 108.2° | 107.0° |
O4' | C4' | H15 | 111.0° | 109.9° |
O3' | C3' | C2' | 120.6° | 110.5° |
O3' | C3' | H11 | 107.5° | 110.4° |
C3' | O3' | H19 | 109.5° | 114.0° |
C3' | C2' | C1' | 107.5° | 102.1° |
C3' | C2' | O2' | 117.9° | 110.9° |
C3' | C2' | H7 | 112.5° | 110.9° |
C2' | C3' | H11 | 110.3° | 110.5° |
O4' | C1' | C2' | 102.1° | 103.5° |
O4' | C1' | N9 | 98.3° | 110.6° |
O4' | C1' | H5 | 115.0° | 110.7° |
C2' | C1' | N9 | 119.7° | 110.7° |
C1' | C2' | O2' | 100.2° | 110.9° |
C2' | C1' | H5 | 109.1° | 110.6° |
C1' | C2' | H7 | 107.5° | 110.9° |
C1' | N9 | C4 | 125.1° | 126.3° |
C1' | N9 | C8 | 126.6° | 126.3° |
N9 | C1' | H5 | 112.1° | 110.6° |
O2' | C2' | H7 | 110.1° | 110.8° |
C2' | O2' | H18 | 109.5° | 114.0° |
C4 | N9 | C8 | 107.9° | 107.4° |
N9 | C4 | N3 | 133.4° | 135.0° |
N9 | C4 | C5 | 107.3° | 105.9° |
N9 | C8 | N7 | 109.2° | 110.0° |
N9 | C8 | H1 | 125.4° | 124.9° |
C4 | N3 | C2 | 120.9° | 120.8° |
N3 | C4 | C5 | 119.3° | 119.1° |
N3 | C2 | N1 | 121.4° | 122.6° |
N3 | C2 | H6 | 119.3° | 118.7° |
C4 | C5 | N7 | 106.2° | 107.2° |
C4 | C5 | C6 | 118.0° | 118.0° |
C8 | N7 | C5 | 109.3° | 109.5° |
N7 | C8 | H1 | 125.4° | 125.0° |
C2 | N1 | C6 | 121.4° | 121.1° |
N1 | C2 | H6 | 119.3° | 118.7° |
N7 | C5 | C6 | 135.8° | 134.8° |
C5 | C6 | N1 | 119.0° | 118.4° |
C5 | C6 | C19 | 119.6° | 120.8° |
N1 | C6 | C19 | 121.4° | 120.8° |
C6 | C19 | C20 | 179.9° | 179.9° |
C19 | C20 | C21 | 180.0° | 180.0° |
C20 | C21 | C26 | 120.0° | 120.0° |
C20 | C21 | C22 | 120.0° | 120.0° |
C26 | C21 | C22 | 120.0° | 119.9° |
C21 | C26 | C25 | 119.9° | 120.0° |
C21 | C26 | H3 | 120.0° | 120.0° |
C21 | C22 | C23 | 120.0° | 119.9° |
C21 | C22 | H2 | 120.0° | 120.0° |
C26 | C25 | C24 | 120.0° | 120.0° |
C25 | C26 | H3 | 120.0° | 120.0° |
C26 | C25 | H9 | 120.0° | 120.0° |
C22 | C23 | C24 | 120.0° | 120.1° |
C23 | C22 | H2 | 120.0° | 120.0° |
C22 | C23 | H8 | 120.0° | 120.0° |
C25 | C24 | C23 | 120.1° | 120.1° |
C25 | C24 | C27 | 120.0° | 119.9° |
C24 | C25 | H9 | 120.0° | 120.0° |
C23 | C24 | C27 | 119.9° | 120.0° |
C24 | C23 | H8 | 120.0° | 120.0° |
C24 | C27 | C32 | 120.0° | 120.1° |
C24 | C27 | C28 | 120.0° | 120.1° |
C27 | C32 | C31 | 120.0° | 119.8° |
C32 | C27 | C28 | 120.0° | 119.8° |
C27 | C32 | H14 | 120.0° | 120.1° |
C32 | C31 | C30 | 120.0° | 120.1° |
C32 | C31 | H13 | 120.0° | 119.9° |
C31 | C32 | H14 | 120.0° | 120.1° |
C27 | C28 | C29 | 120.0° | 119.8° |
C27 | C28 | H4 | 120.0° | 120.1° |
C31 | C30 | C29 | 120.0° | 120.3° |
C31 | C30 | H12 | 120.0° | 119.9° |
C30 | C31 | H13 | 120.0° | 119.9° |
C28 | C29 | C30 | 120.0° | 120.2° |
C29 | C28 | H4 | 120.0° | 120.1° |
C28 | C29 | H10 | 120.0° | 119.9° |
C30 | C29 | H10 | 120.0° | 119.9° |
C29 | C30 | H12 | 120.0° | 119.9° |
H16 | C5' | H17 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O5' | C5' | C4' | H16 | 120.1° | 120.0° |
O5' | C5' | C4' | H17 | 120.2° | 119.9° |
O5' | C5' | C4' | C3' | 165.4° | 175.0° |
O5' | C5' | C4' | O4' | 83.5° | 67.2° |
O5' | C5' | C4' | H15 | 42.9° | 53.9° |
O5' | C5' | H16 | H17 | 119.6° | 120.0° |
C5' | C4' | C3' | O4' | 119.2° | 119.4° |
C5' | C4' | C3' | H15 | 123.7° | 121.2° |
C5' | C4' | O4' | H15 | 127.0° | 121.2° |
C5' | C4' | C3' | O3' | 91.4° | 119.8° |
C5' | C4' | C3' | C2' | 140.0° | 121.5° |
C5' | C4' | O4' | C1' | 155.1° | 145.9° |
C5' | C4' | C3' | H11 | 22.0° | 2.8° |
C4' | C5' | H16 | H17 | 119.5° | 120.0° |
C4' | C5' | O5' | H20 | 180.0° | 179.9° |
C3' | C4' | O4' | H15 | 116.4° | 119.4° |
C4' | C3' | O3' | C2' | 119.7° | 114.8° |
C4' | C3' | O3' | H11 | 112.8° | 122.6° |
C4' | C3' | C2' | H11 | 115.6° | 118.7° |
C3' | C4' | O4' | C1' | 38.5° | 26.5° |
C4' | C3' | C2' | C1' | 0.7° | 20.9° |
C4' | C3' | C2' | O2' | 111.4° | 139.1° |
C4' | C3' | C2' | H7 | 118.8° | 97.3° |
C3' | C4' | C5' | H16 | 74.5° | 55.0° |
C3' | C4' | C5' | H17 | 45.2° | 65.0° |
C4' | C3' | O3' | H19 | 180.0° | 65.2° |
O4' | C4' | C3' | O3' | 149.3° | 120.8° |
O4' | C4' | C3' | C2' | 20.7° | 2.1° |
C4' | O4' | C1' | C2' | 37.3° | 40.1° |
C4' | O4' | C1' | N9 | 160.2° | 158.6° |
C4' | O4' | C1' | H5 | 80.6° | 78.4° |
O4' | C4' | C3' | H11 | 97.2° | 116.6° |
O4' | C4' | C5' | H16 | 36.6° | 172.8° |
O4' | C4' | C5' | H17 | 156.3° | 52.8° |
O3' | C3' | C2' | H11 | 126.3° | 122.5° |
O3' | C3' | C2' | C1' | 118.8° | 97.9° |
O3' | C3' | C2' | O2' | 6.7° | 20.3° |
O3' | C3' | C2' | H7 | 123.0° | 143.9° |
O3' | C3' | C4' | H15 | 32.3° | 1.4° |
C3' | C2' | C1' | O4' | 23.6° | 37.0° |
C3' | C2' | C1' | O2' | 123.7° | 118.3° |
C3' | C2' | C1' | H7 | 121.3° | 118.2° |
C3' | C2' | C1' | N9 | 130.6° | 155.5° |
C3' | C2' | O2' | H7 | 130.8° | 123.7° |
C3' | C2' | C1' | H5 | 98.6° | 81.6° |
C2' | C3' | C4' | H15 | 96.3° | 117.4° |
C3' | C2' | O2' | H18 | 180.0° | 67.2° |
C2' | C3' | O3' | H19 | 60.3° | 180.0° |
O4' | C1' | C2' | N9 | 107.0° | 118.5° |
O4' | C1' | C2' | H5 | 122.1° | 118.6° |
O4' | C1' | N9 | H5 | 121.4° | 123.1° |
O4' | C1' | C2' | O2' | 147.2° | 155.3° |
O4' | C1' | N9 | C4 | 99.0° | 161.0° |
O4' | C1' | N9 | C8 | 71.9° | 19.1° |
O4' | C1' | C2' | H7 | 97.7° | 81.2° |
C1' | O4' | C4' | H15 | 77.9° | 92.9° |
C2' | C1' | N9 | H5 | 129.5° | 122.9° |
C1' | C2' | O2' | H7 | 113.0° | 123.6° |
C2' | C1' | N9 | C4 | 151.9° | 84.9° |
C2' | C1' | N9 | C8 | 37.2° | 95.0° |
C1' | C2' | C3' | H11 | 114.9° | 139.6° |
C1' | C2' | O2' | H18 | 63.9° | 180.0° |
N9 | C1' | C2' | O2' | 105.8° | 86.2° |
C1' | N9 | C4 | C8 | 172.4° | 179.9° |
C1' | N9 | C4 | N3 | 6.6° | 0.2° |
C1' | N9 | C4 | C5 | 174.0° | 180.0° |
C1' | N9 | C8 | N7 | 173.7° | 180.0° |
C1' | N9 | C8 | H1 | 6.3° | 0.0° |
N9 | C1' | C2' | H7 | 9.3° | 37.3° |
O2' | C2' | C1' | H5 | 25.1° | 36.7° |
O2' | C2' | C3' | H11 | 133.0° | 102.2° |
N9 | C4 | N3 | C5 | 179.3° | 179.8° |
N9 | C4 | N3 | C2 | 177.6° | 179.9° |
C4 | N9 | C8 | N7 | 1.5° | 0.1° |
N9 | C4 | C5 | N7 | 1.2° | 0.1° |
N9 | C4 | C5 | C6 | 179.2° | 179.9° |
C4 | N9 | C8 | H1 | 178.5° | 180.0° |
C4 | N9 | C1' | H5 | 22.4° | 37.9° |
C8 | N9 | C4 | N3 | 179.0° | 179.9° |
C8 | N9 | C4 | C5 | 1.6° | 0.1° |
N9 | C8 | N7 | H1 | 180.0° | 180.0° |
N9 | C8 | N7 | C5 | 0.8° | 0.0° |
C8 | N9 | C1' | H5 | 166.7° | 142.2° |
C4 | N3 | C2 | N1 | 2.0° | 0.1° |
N3 | C4 | C5 | N7 | 179.3° | 179.9° |
N3 | C4 | C5 | C6 | 0.3° | 0.0° |
C4 | N3 | C2 | H6 | 178.0° | 180.0° |
C2 | N3 | C4 | C5 | 1.8° | 0.1° |
N3 | C2 | N1 | H6 | 180.0° | 179.9° |
N3 | C2 | N1 | C6 | 0.6° | 0.0° |
C4 | C5 | N7 | C8 | 0.3° | 0.0° |
C4 | C5 | N7 | C6 | 179.5° | 179.9° |
C4 | C5 | C6 | N1 | 1.1° | 0.0° |
C4 | C5 | C6 | C19 | 179.8° | 179.9° |
C8 | N7 | C5 | C6 | 179.8° | 179.9° |
C2 | N1 | C6 | C5 | 0.9° | 0.0° |
C2 | N1 | C6 | C19 | 180.0° | 179.9° |
N7 | C5 | C6 | N1 | 179.5° | 180.0° |
N7 | C5 | C6 | C19 | 0.4° | 0.1° |
C5 | N7 | C8 | H1 | 179.3° | 180.0° |
C5 | C6 | N1 | C19 | 179.1° | 179.9° |
C5 | C6 | C19 | C20 | 6.9° | 42.5° |
N1 | C6 | C19 | C20 | 174.0° | 137.6° |
C6 | N1 | C2 | H6 | 179.4° | 180.0° |
C6 | C19 | C20 | C21 | 71.1° | 136.6° |
C19 | C20 | C21 | C26 | 85.3° | 179.0° |
C19 | C20 | C21 | C22 | 94.8° | 0.7° |
C20 | C21 | C26 | C22 | 179.9° | 179.8° |
C20 | C21 | C26 | C25 | 179.9° | 180.0° |
C20 | C21 | C22 | C23 | 180.0° | 180.0° |
C20 | C21 | C22 | H2 | 0.0° | 0.0° |
C20 | C21 | C26 | H3 | 0.1° | 0.0° |
C21 | C26 | C25 | H3 | 180.0° | 179.9° |
C26 | C21 | C22 | C23 | 0.1° | 0.2° |
C21 | C26 | C25 | C24 | 0.0° | 0.0° |
C26 | C21 | C22 | H2 | 179.9° | 179.8° |
C21 | C26 | C25 | H9 | 179.9° | 180.0° |
C22 | C21 | C26 | C25 | 0.0° | 0.2° |
C21 | C22 | C23 | H2 | 180.0° | 180.0° |
C21 | C22 | C23 | C24 | 0.1° | 0.0° |
C22 | C21 | C26 | H3 | 180.0° | 179.7° |
C21 | C22 | C23 | H8 | 179.9° | 180.0° |
C26 | C25 | C24 | H9 | 180.0° | 179.9° |
C26 | C25 | C24 | C23 | 0.0° | 0.2° |
C26 | C25 | C24 | C27 | 180.0° | 180.0° |
C22 | C23 | C24 | C25 | 0.0° | 0.2° |
C22 | C23 | C24 | H8 | 180.0° | 179.9° |
C22 | C23 | C24 | C27 | 179.9° | 180.0° |
C25 | C24 | C23 | C27 | 180.0° | 179.8° |
C25 | C24 | C27 | C32 | 93.5° | 179.7° |
C25 | C24 | C27 | C28 | 86.5° | 0.2° |
C24 | C25 | C26 | H3 | 179.9° | 179.9° |
C25 | C24 | C23 | H8 | 180.0° | 179.7° |
C23 | C24 | C27 | C32 | 86.5° | 0.1° |
C23 | C24 | C27 | C28 | 93.5° | 180.0° |
C24 | C23 | C22 | H2 | 179.9° | 180.0° |
C23 | C24 | C25 | H9 | 180.0° | 179.8° |
C24 | C27 | C32 | C28 | 180.0° | 179.9° |
C24 | C27 | C32 | C31 | 179.9° | 179.5° |
C24 | C27 | C28 | C29 | 179.9° | 180.0° |
C24 | C27 | C28 | H4 | 0.1° | 0.2° |
C27 | C24 | C23 | H8 | 0.1° | 0.1° |
C27 | C24 | C25 | H9 | 0.0° | 0.0° |
C24 | C27 | C32 | H14 | 0.0° | 0.1° |
C27 | C32 | C31 | H14 | 180.0° | 179.4° |
C27 | C32 | C31 | C30 | 0.1° | 0.8° |
C32 | C27 | C28 | C29 | 0.1° | 0.1° |
C32 | C27 | C28 | H4 | 179.9° | 179.7° |
C27 | C32 | C31 | H13 | 179.9° | 179.7° |
C31 | C32 | C27 | C28 | 0.0° | 0.6° |
C32 | C31 | C30 | H13 | 180.0° | 179.4° |
C32 | C31 | C30 | C29 | 0.0° | 0.6° |
C32 | C31 | C30 | H12 | 180.0° | 179.5° |
C27 | C28 | C29 | H4 | 180.0° | 179.8° |
C27 | C28 | C29 | C30 | 0.1° | 0.2° |
C27 | C28 | C29 | H10 | 179.9° | 179.8° |
C28 | C27 | C32 | H14 | 180.0° | 180.0° |
C31 | C30 | C29 | C28 | 0.1° | 0.0° |
C31 | C30 | C29 | H12 | 180.0° | 180.0° |
C31 | C30 | C29 | H10 | 180.0° | 180.0° |
C30 | C31 | C32 | H14 | 179.9° | 179.7° |
C28 | C29 | C30 | H10 | 180.0° | 180.0° |
C28 | C29 | C30 | H12 | 179.9° | 180.0° |
C30 | C29 | C28 | H4 | 179.9° | 180.0° |
C29 | C30 | C31 | H13 | 180.0° | 180.0° |
H2 | C22 | C23 | H8 | 0.1° | 0.1° |
H3 | C26 | C25 | H9 | 0.1° | 0.1° |
H4 | C28 | C29 | H10 | 0.1° | 0.1° |
H5 | C1' | C2' | H7 | 140.1° | 160.2° |
H7 | C2' | C3' | H11 | 3.2° | 21.4° |
H7 | C2' | O2' | H18 | 49.1° | 56.4° |
H10 | C29 | C30 | H12 | 0.1° | 0.0° |
H11 | C3' | C4' | H15 | 145.7° | 123.9° |
H11 | C3' | O3' | H19 | 67.2° | 57.5° |
H12 | C30 | C31 | H13 | 0.0° | 0.0° |
H13 | C31 | C32 | H14 | 0.1° | 0.3° |
H15 | C4' | C5' | H16 | 163.0° | 66.1° |
H15 | C4' | C5' | H17 | 77.3° | 173.9° |
H16 | C5' | O5' | H20 | 59.9° | 59.9° |
H17 | C5' | O5' | H20 | 59.8° | 60.1° |