ERJ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.55Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C2' | C1' | sing | 1.55Å | 1.54Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C1' | N9 | sing | 1.47Å | 1.46Å | |
| N9 | C8 | sing | 1.36Å | 1.34Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.35Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
| C4 | N3 | doub | 1.33Å | 1.35Å | Aromatic |
| C4 | C5 | sing | 1.41Å | 1.37Å | Aromatic |
| N3 | C2 | sing | 1.32Å | 1.33Å | Aromatic |
| N7 | C5 | sing | 1.35Å | 1.37Å | Aromatic |
| C5 | C6 | doub | 1.41Å | 1.43Å | Aromatic |
| C2 | N1 | doub | 1.32Å | 1.32Å | Aromatic |
| C6 | N1 | sing | 1.33Å | 1.33Å | Aromatic |
| C6 | C19 | sing | 1.48Å | 1.39Å | |
| C19 | C23 | sing | 1.40Å | 1.42Å | Aromatic |
| C19 | C20 | doub | 1.35Å | 1.39Å | Aromatic |
| C23 | C22 | doub | 1.33Å | 1.42Å | Aromatic |
| C20 | S21 | sing | 1.71Å | 1.76Å | Aromatic |
| C22 | S21 | sing | 1.76Å | 1.68Å | Aromatic |
| C8 | H1 | sing | 1.08Å | 1.08Å | |
| C20 | H2 | sing | 1.08Å | 1.08Å | |
| C22 | H3 | sing | 1.08Å | 1.08Å | |
| C1' | H4 | sing | 1.09Å | 1.10Å | |
| C2 | H5 | sing | 1.08Å | 1.08Å | |
| C2' | H6 | sing | 1.09Å | 1.10Å | |
| C23 | H7 | sing | 1.08Å | 1.08Å | |
| C3' | H8 | sing | 1.09Å | 1.10Å | |
| C4' | H9 | sing | 1.09Å | 1.10Å | |
| C5' | H10 | sing | 1.09Å | 1.10Å | |
| C5' | H11 | sing | 1.09Å | 1.10Å | |
| O2' | H12 | sing | 0.97Å | 0.95Å | |
| O3' | H13 | sing | 0.97Å | 0.95Å | |
| O5' | H14 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O5' | C5' | C4' | 110.3° | 109.5° |
| O5' | C5' | H10 | 109.3° | 109.5° |
| O5' | C5' | H11 | 109.3° | 109.5° |
| C5' | O5' | H14 | 109.5° | 114.0° |
| C5' | C4' | C3' | 115.1° | 109.9° |
| C5' | C4' | O4' | 109.2° | 110.0° |
| C5' | C4' | H9 | 108.8° | 110.0° |
| C4' | C5' | H10 | 109.3° | 109.4° |
| C4' | C5' | H11 | 109.3° | 109.4° |
| C3' | C4' | O4' | 105.0° | 107.4° |
| C4' | C3' | O3' | 108.8° | 110.6° |
| C4' | C3' | C2' | 104.7° | 104.2° |
| C4' | C3' | H8 | 110.6° | 110.5° |
| C3' | C4' | H9 | 108.7° | 109.9° |
| C4' | O4' | C1' | 108.0° | 106.9° |
| O4' | C4' | H9 | 109.8° | 109.7° |
| O3' | C3' | C2' | 110.5° | 110.5° |
| O3' | C3' | H8 | 111.9° | 110.5° |
| C3' | O3' | H13 | 109.5° | 113.9° |
| C3' | C2' | C1' | 103.9° | 102.1° |
| C3' | C2' | O2' | 113.0° | 110.9° |
| C3' | C2' | H6 | 108.5° | 110.9° |
| C2' | C3' | H8 | 110.1° | 110.4° |
| O4' | C1' | C2' | 105.9° | 103.6° |
| O4' | C1' | N9 | 106.5° | 110.6° |
| O4' | C1' | H4 | 110.6° | 110.6° |
| C1' | C2' | O2' | 111.9° | 110.9° |
| C2' | C1' | N9 | 115.0° | 110.7° |
| C2' | C1' | H4 | 108.9° | 110.6° |
| C1' | C2' | H6 | 108.8° | 110.9° |
| O2' | C2' | H6 | 110.5° | 110.9° |
| C2' | O2' | H12 | 109.5° | 114.0° |
| C1' | N9 | C8 | 125.7° | 126.3° |
| C1' | N9 | C4 | 125.2° | 126.3° |
| N9 | C1' | H4 | 109.9° | 110.6° |
| C8 | N9 | C4 | 109.1° | 107.4° |
| N9 | C8 | N7 | 109.0° | 110.0° |
| N9 | C8 | H1 | 125.5° | 125.0° |
| N9 | C4 | N3 | 133.7° | 135.0° |
| N9 | C4 | C5 | 106.3° | 106.0° |
| C8 | N7 | C5 | 108.5° | 109.4° |
| N7 | C8 | H1 | 125.5° | 125.0° |
| N3 | C4 | C5 | 119.9° | 119.1° |
| C4 | N3 | C2 | 120.9° | 120.7° |
| C4 | C5 | N7 | 107.1° | 107.2° |
| C4 | C5 | C6 | 117.4° | 118.1° |
| N3 | C2 | N1 | 121.2° | 122.5° |
| N3 | C2 | H5 | 119.4° | 118.7° |
| N7 | C5 | C6 | 135.5° | 134.7° |
| C5 | C6 | N1 | 118.7° | 118.4° |
| C5 | C6 | C19 | 122.1° | 120.8° |
| C2 | N1 | C6 | 122.0° | 121.2° |
| N1 | C2 | H5 | 119.4° | 118.8° |
| N1 | C6 | C19 | 119.2° | 120.8° |
| C6 | C19 | C23 | 124.6° | 122.9° |
| C6 | C19 | C20 | 120.5° | 122.9° |
| C23 | C19 | C20 | 114.9° | 114.2° |
| C19 | C23 | C22 | 116.4° | 113.8° |
| C19 | C23 | H7 | 121.8° | 123.2° |
| C19 | C20 | S21 | 104.2° | 110.5° |
| C19 | C20 | H2 | 127.9° | 124.7° |
| C23 | C22 | S21 | 104.4° | 109.8° |
| C23 | C22 | H3 | 127.8° | 125.1° |
| C22 | C23 | H7 | 121.8° | 123.1° |
| C20 | S21 | C22 | 100.1° | 91.7° |
| S21 | C20 | H2 | 127.9° | 124.8° |
| S21 | C22 | H3 | 127.8° | 125.1° |
| H10 | C5' | H11 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | C5' | C4' | H10 | 120.1° | 120.0° |
| O5' | C5' | C4' | H11 | 120.1° | 120.0° |
| O5' | C5' | C4' | C3' | 171.7° | 175.0° |
| O5' | C5' | C4' | O4' | 53.8° | 67.0° |
| O5' | C5' | C4' | H9 | 66.1° | 53.9° |
| O5' | C5' | H10 | H11 | 119.6° | 120.1° |
| C5' | C4' | C3' | O4' | 120.2° | 119.6° |
| C5' | C4' | C3' | H9 | 122.3° | 121.2° |
| C5' | C4' | O4' | H9 | 119.3° | 121.1° |
| C5' | C4' | C3' | O3' | 99.9° | 119.8° |
| C5' | C4' | C3' | C2' | 141.9° | 121.5° |
| C5' | C4' | O4' | C1' | 159.7° | 145.8° |
| C5' | C4' | C3' | H8 | 23.3° | 2.8° |
| C4' | C5' | H10 | H11 | 119.6° | 120.0° |
| C4' | C5' | O5' | H14 | 180.0° | 180.0° |
| C3' | C4' | O4' | H9 | 116.7° | 119.4° |
| C4' | C3' | O3' | C2' | 114.4° | 114.9° |
| C4' | C3' | O3' | H8 | 122.5° | 122.7° |
| C4' | C3' | C2' | H8 | 118.9° | 118.7° |
| C3' | C4' | O4' | C1' | 35.7° | 26.2° |
| C4' | C3' | C2' | C1' | 1.8° | 20.9° |
| C4' | C3' | C2' | O2' | 119.6° | 139.1° |
| C4' | C3' | C2' | H6 | 117.4° | 97.3° |
| C3' | C4' | C5' | H10 | 51.5° | 55.0° |
| C3' | C4' | C5' | H11 | 68.2° | 65.0° |
| C4' | C3' | O3' | H13 | 180.0° | 65.2° |
| O4' | C4' | C3' | O3' | 139.9° | 120.6° |
| O4' | C4' | C3' | C2' | 21.7° | 1.9° |
| C4' | O4' | C1' | C2' | 34.6° | 39.8° |
| C4' | O4' | C1' | N9 | 157.5° | 158.4° |
| C4' | O4' | C1' | H4 | 83.1° | 78.8° |
| O4' | C4' | C3' | H8 | 96.8° | 116.8° |
| O4' | C4' | C5' | H10 | 66.3° | 173.0° |
| O4' | C4' | C5' | H11 | 173.9° | 53.0° |
| O3' | C3' | C2' | H8 | 124.1° | 122.5° |
| O3' | C3' | C2' | C1' | 118.8° | 97.9° |
| O3' | C3' | C2' | O2' | 2.7° | 20.2° |
| O3' | C3' | C2' | H6 | 125.6° | 143.9° |
| O3' | C3' | C4' | H9 | 22.4° | 1.3° |
| C3' | C2' | C1' | O4' | 19.2° | 36.9° |
| C3' | C2' | C1' | O2' | 122.2° | 118.2° |
| C3' | C2' | C1' | H6 | 115.5° | 118.2° |
| C3' | C2' | O2' | H6 | 121.8° | 123.7° |
| C3' | C2' | C1' | N9 | 136.5° | 155.5° |
| C3' | C2' | C1' | H4 | 99.7° | 81.6° |
| C2' | C3' | C4' | H9 | 95.8° | 117.4° |
| C3' | C2' | O2' | H12 | 180.0° | 67.3° |
| C2' | C3' | O3' | H13 | 65.6° | 180.0° |
| O4' | C1' | C2' | N9 | 117.3° | 118.6° |
| O4' | C1' | C2' | H4 | 118.9° | 118.5° |
| O4' | C1' | C2' | O2' | 141.4° | 155.1° |
| O4' | C1' | N9 | H4 | 119.8° | 122.8° |
| O4' | C1' | N9 | C8 | 74.3° | 21.5° |
| O4' | C1' | N9 | C4 | 102.3° | 158.6° |
| O4' | C1' | C2' | H6 | 96.3° | 81.3° |
| C1' | O4' | C4' | H9 | 81.0° | 93.1° |
| C1' | C2' | O2' | H6 | 121.3° | 123.6° |
| C2' | C1' | N9 | H4 | 123.2° | 122.9° |
| C2' | C1' | N9 | C8 | 42.7° | 92.8° |
| C2' | C1' | N9 | C4 | 140.7° | 87.1° |
| C1' | C2' | C3' | H8 | 117.1° | 139.6° |
| C1' | C2' | O2' | H12 | 63.2° | 180.0° |
| O2' | C2' | C1' | N9 | 101.3° | 86.3° |
| O2' | C2' | C1' | H4 | 22.5° | 36.6° |
| O2' | C2' | C3' | H8 | 121.5° | 102.3° |
| C1' | N9 | C8 | C4 | 177.1° | 179.9° |
| C1' | N9 | C8 | N7 | 177.1° | 180.0° |
| C1' | N9 | C4 | N3 | 2.6° | 0.2° |
| C1' | N9 | C4 | C5 | 177.2° | 180.0° |
| C1' | N9 | C8 | H1 | 2.9° | 0.1° |
| N9 | C1' | C2' | H6 | 21.0° | 37.3° |
| N9 | C8 | N7 | H1 | 180.0° | 180.0° |
| C8 | N9 | C4 | N3 | 179.7° | 179.9° |
| C8 | N9 | C4 | C5 | 0.1° | 0.1° |
| N9 | C8 | N7 | C5 | 0.1° | 0.0° |
| C8 | N9 | C1' | H4 | 165.9° | 144.3° |
| C4 | N9 | C8 | N7 | 0.0° | 0.1° |
| N9 | C4 | N3 | C5 | 179.7° | 179.9° |
| N9 | C4 | N3 | C2 | 179.1° | 179.9° |
| N9 | C4 | C5 | N7 | 0.1° | 0.1° |
| N9 | C4 | C5 | C6 | 179.1° | 179.9° |
| C4 | N9 | C8 | H1 | 180.0° | 180.0° |
| C4 | N9 | C1' | H4 | 17.5° | 35.8° |
| C8 | N7 | C5 | C4 | 0.1° | 0.0° |
| C8 | N7 | C5 | C6 | 178.9° | 179.9° |
| N3 | C4 | C5 | N7 | 179.7° | 179.9° |
| N3 | C4 | C5 | C6 | 1.1° | 0.0° |
| C4 | N3 | C2 | N1 | 1.4° | 0.1° |
| C4 | N3 | C2 | H5 | 178.6° | 180.0° |
| C5 | C4 | N3 | C2 | 1.1° | 0.1° |
| C4 | C5 | N7 | C6 | 179.0° | 179.9° |
| C4 | C5 | C6 | N1 | 1.3° | 0.0° |
| C4 | C5 | C6 | C19 | 178.3° | 179.9° |
| N3 | C2 | N1 | H5 | 180.0° | 179.9° |
| N3 | C2 | N1 | C6 | 1.7° | 0.0° |
| N7 | C5 | C6 | N1 | 179.8° | 180.0° |
| N7 | C5 | C6 | C19 | 0.6° | 0.1° |
| C5 | N7 | C8 | H1 | 179.9° | 180.0° |
| C5 | C6 | N1 | C2 | 1.6° | 0.0° |
| C5 | C6 | N1 | C19 | 179.6° | 179.9° |
| C5 | C6 | C19 | C23 | 4.6° | 145.0° |
| C5 | C6 | C19 | C20 | 177.4° | 35.0° |
| C2 | N1 | C6 | C19 | 178.0° | 179.9° |
| N1 | C6 | C19 | C23 | 175.0° | 34.9° |
| N1 | C6 | C19 | C20 | 3.0° | 145.1° |
| C6 | N1 | C2 | H5 | 178.3° | 180.0° |
| C6 | C19 | C23 | C20 | 178.1° | 180.0° |
| C6 | C19 | C23 | C22 | 178.1° | 180.0° |
| C6 | C19 | C20 | S21 | 179.7° | 180.0° |
| C6 | C19 | C20 | H2 | 0.3° | 0.3° |
| C6 | C19 | C23 | H7 | 1.8° | 0.0° |
| C19 | C23 | C22 | H7 | 180.0° | 180.0° |
| C23 | C19 | C20 | S21 | 2.1° | 0.0° |
| C19 | C23 | C22 | S21 | 2.2° | 0.0° |
| C23 | C19 | C20 | H2 | 177.9° | 179.7° |
| C19 | C23 | C22 | H3 | 177.8° | 180.0° |
| C20 | C19 | C23 | C22 | 0.0° | 0.0° |
| C19 | C20 | S21 | H2 | 180.0° | 179.7° |
| C19 | C20 | S21 | C22 | 3.0° | 0.0° |
| C20 | C19 | C23 | H7 | 179.9° | 179.9° |
| C23 | C22 | S21 | C20 | 3.0° | 0.0° |
| C23 | C22 | S21 | H3 | 180.0° | 180.0° |
| C20 | S21 | C22 | H3 | 177.0° | 180.0° |
| C22 | S21 | C20 | H2 | 177.0° | 179.7° |
| S21 | C22 | C23 | H7 | 177.9° | 180.0° |
| H3 | C22 | C23 | H7 | 2.2° | 0.0° |
| H4 | C1' | C2' | H6 | 144.8° | 160.2° |
| H6 | C2' | C3' | H8 | 1.5° | 21.4° |
| H6 | C2' | O2' | H12 | 58.2° | 56.4° |
| H8 | C3' | C4' | H9 | 145.6° | 124.0° |
| H8 | C3' | O3' | H13 | 57.5° | 57.5° |
| H9 | C4' | C5' | H10 | 173.8° | 66.0° |
| H9 | C4' | C5' | H11 | 54.0° | 173.9° |
| H10 | C5' | O5' | H14 | 59.9° | 60.0° |
| H11 | C5' | O5' | H14 | 59.8° | 60.1° |
