Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

EPD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C51C5sing1.51Å1.51Å
C51H511sing1.09Å1.11Å
C51H512sing1.09Å1.11Å
C51H513sing1.09Å1.12Å
C5C4doub1.31Å1.32Å
C5C6sing1.51Å1.55Å
C4C3sing1.50Å1.50Å
C4H4sing1.08Å1.10Å
C3C2sing1.53Å1.56Å
C3H31sing1.10Å1.11Å
C3H32sing1.08Å1.11Å
C2C20sing1.51Å1.60Å
C2O1sing1.45Å1.77Å
C2H2sing1.09Å1.12Å
C20C21sing1.51Å1.52Å
C20C22doub1.33Å1.35Å
C21H211sing1.09Å1.11Å
C21H212sing1.09Å1.11Å
C21H213sing1.09Å1.12Å
C22C23sing1.48Å1.42Å
C22H22sing1.08Å1.10Å
C23C24doub1.35Å1.29ÅAromatic
C23N26sing1.33Å1.43ÅAromatic
C24S1sing1.76Å1.74ÅAromatic
C24H24sing1.08Å1.10Å
S1C25sing1.71Å1.73ÅAromatic
C25C27sing1.51Å1.50Å
C25N26doub1.29Å1.25ÅAromatic
C27H271sing1.09Å1.12Å
C27H272sing1.09Å1.11Å
C27H273sing1.09Å1.11Å
C6C7sing1.53Å1.52Å
C6H61sing1.10Å1.12Å
C6H62sing1.08Å1.11Å
C7C8sing1.51Å1.54Å
C7H71sing1.08Å1.11Å
C7H72sing1.11Å1.11Å
C8C9sing1.53Å1.51Å
C8H81sing1.10Å1.11Å
C8H82sing1.09Å1.12Å
C9C91sing1.53Å1.48Å
C9C10sing1.52Å1.61Å
C9H9sing1.10Å1.11Å
C91H911sing1.09Å1.12Å
C91H912sing1.09Å1.12Å
C91H913sing1.09Å1.11Å
C10O10sing1.43Å1.48Å
C10C11sing1.53Å1.58Å
C10H10sing1.09Å1.12Å
O10H3sing0.97Å0.95Å
C11C28sing1.53Å1.52Å
C11C12sing1.51Å1.53Å
C11H11sing1.07Å1.12Å
C28H281sing1.09Å1.12Å
C28H282sing1.09Å1.11Å
C28H283sing1.09Å1.11Å
C12O12doub1.21Å1.24Å
C12C13sing1.50Å1.55Å
C13C30sing1.53Å1.51Å
C13C29sing1.54Å1.53Å
C13C14sing1.52Å1.61Å
C30H301sing1.09Å1.12Å
C30H302sing1.09Å1.11Å
C30H303sing1.09Å1.11Å
C29H291sing1.09Å1.12Å
C29H292sing1.09Å1.12Å
C29H293sing1.09Å1.12Å
C14O14sing1.43Å1.43Å
C14C15sing1.51Å1.50Å
C14H14sing1.11Å1.11Å
O14H1sing0.97Å0.95Å
C15C16sing1.50Å1.57Å
C15H151sing1.08Å1.12Å
C15H152sing1.11Å1.11Å
C16O16doub1.21Å1.21Å
C16O1sing1.34Å1.46Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C5C51H511114.9°109.5°
C5C51H512110.2°109.5°
C5C51H513110.2°109.5°
C51C5C4114.9°118.6°
C51C5C6120.5°119.2°
H511C51H512110.3°109.5°
H511C51H513110.2°109.5°
H512C51H513100.0°109.4°
C4C5C6120.5°122.2°
C5C4C3122.4°122.4°
C5C4H4112.2°118.3°
C5C6C7113.9°109.3°
C5C6H61110.6°108.9°
C5C6H62110.6°109.7°
C3C4H4125.4°119.3°
C4C3C2111.4°109.9°
C4C3H31111.5°108.6°
C4C3H32111.5°110.7°
C2C3H31111.5°108.9°
C2C3H32111.5°110.0°
C3C2C20113.4°109.6°
C3C2O1117.6°109.6°
C3C2H297.3°109.5°
H31C3H3298.9°108.8°
C20C2O191.2°109.0°
C20C2H2121.5°109.2°
C2C20C21116.7°120.0°
C2C20C22115.8°120.0°
O1C2H2117.7°109.9°
C2O1C16124.4°118.1°
C21C20C22127.3°120.0°
C20C21H211116.8°109.5°
C20C21H212109.6°109.5°
C20C21H213109.6°109.5°
C20C22C23124.2°120.0°
C20C22H22115.1°119.9°
H211C21H212109.5°109.5°
H211C21H213109.5°109.5°
H212C21H213100.5°109.4°
C23C22H22120.7°120.1°
C22C23C24132.5°123.0°
C22C23N26114.6°123.0°
C24C23N26112.8°114.0°
C23C24S1113.0°107.9°
C23C24H24110.9°126.1°
C23N26C25110.8°117.1°
S1C24H24136.1°126.0°
C24S1C2586.5°90.4°
S1C25C27116.7°124.7°
S1C25N26116.8°110.5°
C27C25N26126.5°124.8°
C25C27H271116.7°109.5°
C25C27H272109.6°109.5°
C25C27H273109.6°109.5°
H271C27H272109.6°109.4°
H271C27H273109.6°109.5°
H272C27H273100.7°109.5°
C7C6H61110.6°108.6°
C7C6H62110.6°110.9°
C6C7C8108.3°112.2°
C6C7H71112.7°110.6°
C6C7H72112.7°106.9°
H61C6H6299.8°109.4°
C8C7H71112.6°113.2°
C8C7H72112.6°107.0°
C7C8C9126.9°114.0°
C7C8H81106.1°108.7°
C7C8H82106.1°109.7°
H71C7H7297.9°106.6°
C9C8H81106.1°107.5°
C9C8H82106.1°109.5°
C8C9C91122.5°111.3°
C8C9C1097.1°110.6°
C8C9H9107.7°107.2°
H81C8H82103.3°107.1°
C91C9C10102.6°110.7°
C91C9H9102.7°108.0°
C9C91H911122.5°109.5°
C9C91H912107.6°109.4°
C9C91H913107.6°109.5°
C10C9H9126.2°108.8°
C9C10O10105.6°109.8°
C9C10C11116.0°111.3°
C9C10H10110.5°109.6°
H911C91H912107.5°109.4°
H911C91H913107.6°109.5°
H912C91H913102.3°109.5°
O10C10C11116.2°108.7°
O10C10H10110.1°109.2°
C10O10H3105.6°114.0°
C11C10H1098.2°108.2°
C10C11C28114.7°108.9°
C10C11C12111.3°107.4°
C10C11H11104.0°110.8°
C28C11C12108.0°108.5°
C28C11H11107.6°109.5°
C11C28H281114.7°109.5°
C11C28H282110.3°109.5°
C11C28H283110.3°109.4°
C12C11H11111.2°111.7°
C11C12O12114.6°116.7°
C11C12C13117.3°121.8°
H281C28H282110.3°109.5°
H281C28H283110.3°109.4°
H282C28H283100.0°109.6°
O12C12C13128.1°121.5°
C12C13C30114.0°110.2°
C12C13C29112.6°108.6°
C12C13C14108.7°112.1°
C30C13C29112.5°107.7°
C30C13C14101.5°110.5°
C13C30H301114.0°109.4°
C13C30H302110.6°109.5°
C13C30H303110.6°109.5°
C29C13C14106.5°107.5°
C13C29H291112.6°109.5°
C13C29H292111.1°109.5°
C13C29H293111.1°109.5°
C13C14O14113.7°111.4°
C13C14C15116.3°114.0°
C13C14H1499.4°106.8°
H301C30H302110.5°109.5°
H301C30H303110.5°109.5°
H302C30H30399.8°109.5°
H291C29H292111.0°109.5°
H291C29H293111.0°109.5°
H292C29H29399.3°109.4°
O14C14C15101.6°110.5°
O14C14H14114.6°106.4°
C14O14H1113.7°113.9°
C15C14H14111.9°107.3°
C14C15C16110.3°112.8°
C14C15H151111.9°112.4°
C14C15H152111.9°107.7°
C16C15H151111.9°110.8°
C16C15H152111.9°106.6°
C15C16O16119.4°120.9°
C15C16O1120.5°119.2°
H151C15H15298.5°106.0°
O16C16O1120.1°119.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C5C51H511H512125.3°120.0°
C5C51H511H513125.2°120.0°
C5C51H512H513116.0°120.0°
C51C5C4C6157.1°179.9°
C51C5C4C3170.0°179.9°
C51C5C4H410.0°0.4°
C51C5C6C756.2°72.4°
C51C5C6H61178.6°46.2°
C51C5C6H6269.1°165.9°
H511C51H512H513116.0°120.0°
H511C51C5C4180.0°0.0°
H511C51C5C622.9°179.9°
H512C51C5C454.7°120.0°
H512C51C5C6102.4°59.8°
H513C51C5C454.8°120.0°
H513C51C5C6148.1°60.1°
C5C4C3H4180.0°179.5°
C5C4C3C2124.4°96.8°
C5C4C3H31110.3°144.2°
C5C4C3H320.8°24.9°
C4C5C6C7148.0°107.8°
C4C5C6H6122.7°133.7°
C4C5C6H6286.8°14.0°
C6C5C4C312.9°0.3°
C6C5C4H4167.2°179.8°
C5C6C7H61125.2°118.7°
C5C6C7H62125.2°121.1°
C5C6H61H62116.4°119.9°
C5C6C7C874.2°179.8°
C5C6C7H71160.6°52.4°
C5C6C7H7251.1°63.3°
C4C3C2H31125.3°118.8°
C4C3C2H32125.3°122.1°
C4C3H31H32117.4°120.5°
C4C3C2C20178.6°63.8°
C4C3C2O176.9°176.6°
C4C3C2H249.6°56.0°
H4C4C3C255.6°83.7°
H4C4C3H3169.7°35.3°
H4C4C3H32179.2°154.6°
C2C3H31H32117.4°119.9°
C3C2C20O1120.9°119.9°
C3C2C20H2115.3°120.0°
C3C2O1H2115.8°120.4°
C3C2C20C21162.6°65.1°
C3C2C20C2214.0°115.0°
C3C2O1C16105.0°107.6°
H31C3C2C2053.3°55.0°
H31C3C2O1157.8°64.6°
H31C3C2H275.7°174.8°
H32C3C2C2056.2°174.1°
H32C3C2O148.4°54.5°
H32C3C2H2174.9°66.1°
C20C2O1H2126.9°119.7°
C2C20C21C22176.2°179.9°
C2C20C21H211180.0°95.7°
C2C20C21H21254.7°144.3°
C2C20C21H21354.7°24.4°
C2C20C22C23178.4°173.1°
C2C20C22H221.6°6.8°
C20C2O1C16137.7°132.5°
O1C2C20C2141.7°54.8°
O1C2C20C22134.9°125.1°
C2O1C16C15176.7°172.9°
C2O1C16O162.7°7.2°
H2C2C20C2182.2°174.9°
H2C2C20C22101.2°5.0°
H2C2O1C1610.8°12.8°
C20C21H211H212125.3°120.0°
C20C21H211H213125.3°120.0°
C20C21H212H213115.4°120.0°
C21C20C22C232.2°6.8°
C21C20C22H22177.8°173.3°
C22C20C21H2113.9°84.3°
C22C20C21H212121.4°35.7°
C22C20C21H213129.1°155.7°
C20C22C23H22180.0°179.9°
C20C22C23C24171.0°174.8°
C20C22C23N2612.6°4.8°
H211C21H212H213115.2°120.0°
C22C23C24N26176.5°179.7°
C22C23C24S1178.5°179.9°
C22C23C24H241.6°0.1°
C22C23N26C25179.4°179.9°
H22C22C23C249.0°5.2°
H22C22C23N26167.4°175.1°
C23C24S1H24180.0°180.0°
C23C24S1C251.0°0.0°
C24C23N26C252.2°0.4°
N26C23C24S12.0°0.2°
N26C23C24H24178.0°179.8°
C23N26C25S11.5°0.4°
C23N26C25C27178.7°179.8°
C24S1C25C27179.8°180.0°
C24S1C25N260.3°0.2°
H24C24S1C25179.0°180.0°
S1C25C27N26179.9°179.8°
S1C25C27H271180.0°0.0°
S1C25C27H27254.8°120.0°
S1C25C27H27354.8°120.0°
C25C27H271H272125.2°120.0°
C25C27H271H273125.2°120.0°
C25C27H272H273115.4°120.0°
N26C25C27H2710.1°179.8°
N26C25C27H272125.3°59.8°
N26C25C27H273125.1°60.2°
H271C27H272H273115.4°120.0°
C7C6H61H62116.5°121.1°
C6C7C8H71125.2°126.0°
C6C7C8H72125.2°116.9°
C6C7H71H72118.6°115.8°
C6C7C8C9101.1°71.3°
C6C7C8H81133.7°168.8°
C6C7C8H8224.2°52.0°
H61C6C7C851.1°61.5°
H61C6C7H7174.1°171.1°
H61C6C7H72176.3°55.5°
H62C6C7C8160.6°58.7°
H62C6C7H7135.4°68.7°
H62C6C7H7274.2°175.7°
C8C7H71H72118.6°117.4°
C7C8C9H81125.3°120.6°
C7C8C9H82125.3°123.4°
C7C8H81H82111.4°118.5°
C7C8C9C9171.8°37.1°
C7C8C9C10178.3°86.4°
C7C8C9H946.7°155.1°
H71C7C8C924.2°54.7°
H71C7C8H81101.1°65.2°
H71C7C8H82149.4°178.0°
H72C7C8C9133.7°171.8°
H72C7C8H818.4°51.9°
H72C7C8H82101.1°64.9°
C9C8H81H82111.4°117.6°
C8C9C91C10107.0°123.5°
C8C9C91H9120.9°117.5°
C8C9C10H9118.1°117.6°
C8C9C91H911180.0°60.1°
C8C9C91H91254.8°180.0°
C8C9C91H91354.7°60.0°
C8C9C10O1061.7°41.0°
C8C9C10C11168.0°161.5°
C8C9C10H1057.4°78.9°
H81C8C9C91162.9°83.5°
H81C8C9C1053.0°153.0°
H81C8C9H978.6°34.5°
H82C8C9C9153.5°160.5°
H82C8C9C1056.4°36.9°
H82C8C9H9171.9°81.6°
C91C9C10H9116.2°118.6°
C9C91H911H912125.2°119.9°
C9C91H911H913125.3°120.0°
C9C91H912H913113.1°120.0°
C91C9C10O10172.7°164.9°
C91C9C10C1142.4°74.6°
C91C9C10H1068.2°45.0°
C10C9C91H91173.0°176.5°
C10C9C91H91252.2°56.5°
C10C9C91H913161.7°63.5°
C9C10O10C11130.2°122.0°
C9C10O10H10119.4°120.2°
C9C10C11H10117.6°120.5°
C9C10O10H3180.0°180.0°
C9C10C11C2865.3°91.3°
C9C10C11C12171.7°151.4°
C9C10C11H1152.0°29.1°
H9C9C91H91159.2°57.4°
H9C9C91H912175.7°62.5°
H9C9C91H91366.2°177.5°
H9C9C10O1056.4°76.5°
H9C9C10C1173.9°43.9°
H9C9C10H10175.5°163.5°
H911C91H912H913113.2°120.1°
O10C10C11H10117.3°118.4°
O10C10C11C2859.8°29.8°
O10C10C11C1263.2°87.5°
O10C10C11H11177.0°150.2°
C11C10O10H349.9°58.0°
C10C11C28C12124.8°116.6°
C10C11C28H11115.1°121.2°
C10C11C12H11115.4°121.7°
C10C11C28H281180.0°60.0°
C10C11C28H28254.8°180.0°
C10C11C28H28354.8°60.0°
C10C11C12O1276.2°53.8°
C10C11C12C13102.7°126.7°
H10C10O10H360.6°59.8°
H10C10C11C28177.1°148.2°
H10C10C11C1254.1°30.9°
H10C10C11H1165.7°91.3°
C28C11C12H11117.8°120.8°
C11C28H281H282125.2°120.0°
C11C28H281H283125.2°119.9°
C11C28H282H283116.1°120.0°
C28C11C12O1250.6°63.8°
C28C11C12C13130.5°115.8°
C12C11C28H28155.2°56.6°
C12C11C28H282179.6°63.4°
C12C11C28H28370.0°176.5°
C11C12O12C13178.8°179.5°
C11C12C13C3059.7°40.4°
C11C12C13C29170.5°77.3°
C11C12C13C1452.7°164.0°
H11C11C28H28164.9°178.8°
H11C11C28H28260.3°58.8°
H11C11C28H283169.9°61.3°
H11C11C12O12168.4°175.4°
H11C11C12C1312.7°5.0°
H281C28H282H283116.2°120.0°
O12C12C13C30121.5°140.1°
O12C12C13C298.2°102.2°
O12C12C13C14126.1°16.5°
C12C13C30C29129.8°118.3°
C12C13C30C14116.7°124.5°
C12C13C29C14119.1°121.5°
C12C13C30H301180.0°60.1°
C12C13C30H30254.7°180.0°
C12C13C30H30354.8°59.9°
C12C13C29H291180.0°60.0°
C12C13C29H29254.7°180.0°
C12C13C29H29354.8°60.0°
C12C13C14O14169.7°31.1°
C12C13C14C1572.8°94.8°
C12C13C14H1447.4°146.9°
C30C13C29C14110.4°119.2°
C13C30H301H302125.3°120.0°
C13C30H301H303125.2°120.0°
C13C30H302H303116.4°120.0°
C30C13C29H29149.5°179.3°
C30C13C29H29275.8°60.7°
C30C13C29H293174.7°59.2°
C30C13C14O1449.2°154.4°
C30C13C14C15166.7°28.6°
C30C13C14H1473.1°89.7°
C29C13C30H30150.2°58.2°
C29C13C30H302175.5°61.8°
C29C13C30H30375.0°178.2°
C13C29H291H292125.3°120.0°
C13C29H291H293125.3°120.0°
C13C29H292H293117.0°120.0°
C29C13C14O1468.7°88.2°
C29C13C14C1548.8°146.0°
C29C13C14H14169.0°27.7°
C14C13C30H30163.3°175.4°
C14C13C30H30261.9°55.5°
C14C13C30H303171.5°64.6°
C14C13C29H29160.9°61.6°
C14C13C29H292173.8°58.5°
C14C13C29H29364.3°178.4°
C13C14O14C15125.7°127.8°
C13C14O14H14113.4°116.1°
C13C14C15H14113.2°118.0°
C13C14O14H1180.0°180.0°
C13C14C15C16174.7°63.1°
C13C14C15H15160.1°63.1°
C13C14C15H15249.4°179.5°
H301C30H302H303116.3°120.0°
H291C29H292H293116.9°120.0°
O14C14C15H14122.8°115.6°
O14C14C15C1661.3°63.2°
O14C14C15H15163.9°170.6°
O14C14C15H152173.4°54.2°
C15C14O14H154.3°52.3°
C14C15C16H151125.2°127.1°
C14C15C16H152125.3°118.0°
C14C15H151H152117.8°117.4°
C14C15C16O16163.8°17.6°
C14C15C16O116.8°162.3°
H14C14O14H166.6°63.9°
H14C14C15C1661.4°178.9°
H14C14C15H151173.3°54.9°
H14C14C15H15263.9°61.4°
C16C15H151H152117.8°115.3°
C15C16O16O1179.4°179.9°
H151C15C16O1638.6°144.6°
H151C15C16O1142.0°35.3°
H152C15C16O1670.9°100.5°
H152C15C16O1108.5°79.6°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon