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Summary Geometry Related PDB entries

EME

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C7	N	sing	1.47Å	1.38Å
N	CA	sing	1.47Å	1.47Å
CB	CA	sing	1.53Å	1.53Å
CB	CG	sing	1.53Å	1.54Å
CA	C	sing	1.51Å	1.53Å
OE2	CD	doub	1.21Å	1.29Å
O	C	doub	1.21Å	1.24Å
CD	CG	sing	1.51Å	1.57Å
CD	OE1	sing	1.34Å	1.27Å
C	OXT	sing	1.34Å	1.48Å
C7	H1	sing	1.09Å	1.10Å
C7	H4	sing	1.09Å	1.10Å
C7	H3	sing	1.09Å	1.10Å
N	H	sing	1.01Å	1.00Å
CA	HA	sing	1.09Å	1.10Å
CB	H7	sing	1.09Å	1.10Å
CB	H8	sing	1.09Å	1.10Å
CG	H9	sing	1.09Å	1.10Å
CG	H10	sing	1.09Å	1.10Å
OE1	H11	sing	0.97Å	0.95Å
OXT	HXT	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C7	N	CA	124.3°	111.0°
N	C7	H1	109.5°	109.4°
N	C7	H4	109.5°	109.5°
N	C7	H3	109.5°	109.5°
C7	N	H	105.7°	111.0°
N	CA	CB	111.4°	109.5°
N	CA	C	107.2°	109.5°
CA	N	H	105.6°	110.9°
N	CA	HA	109.0°	109.5°
CA	CB	CG	110.6°	109.4°
CB	CA	C	112.5°	109.5°
CB	CA	HA	108.3°	109.5°
CA	CB	H7	109.2°	109.5°
CA	CB	H8	109.2°	109.5°
CB	CG	CD	108.4°	109.4°
CG	CB	H7	109.2°	109.5°
CG	CB	H8	109.2°	109.5°
CB	CG	H9	109.8°	109.5°
CB	CG	H10	109.7°	109.5°
CA	C	O	125.2°	120.0°
CA	C	OXT	109.8°	120.0°
C	CA	HA	108.3°	109.4°
OE2	CD	CG	114.2°	120.0°
OE2	CD	OE1	127.6°	120.0°
O	C	OXT	124.9°	120.0°
CG	CD	OE1	118.0°	120.0°
CD	CG	H9	109.7°	109.4°
CD	CG	H10	109.8°	109.4°
CD	OE1	H11	109.5°	116.9°
C	OXT	HXT	109.5°	117.0°
H1	C7	H4	109.5°	109.4°
H1	C7	H3	109.4°	109.4°
H4	C7	H3	109.5°	109.5°
H7	CB	H8	109.4°	109.5°
H9	CG	H10	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C7	N	CA	H	122.0°	123.9°
C7	N	CA	CB	54.4°	153.9°
C7	N	CA	C	69.1°	86.2°
N	C7	H1	H4	120.0°	120.0°
N	C7	H1	H3	120.0°	120.0°
N	C7	H4	H3	120.0°	120.1°
C7	N	CA	HA	173.9°	33.8°
N	CA	CB	C	120.4°	120.0°
N	CA	CB	HA	119.9°	120.0°
N	CA	CB	CG	175.8°	65.0°
N	CA	C	HA	117.5°	119.9°
N	CA	C	O	72.3°	26.0°
N	CA	C	OXT	105.0°	154.0°
CA	N	C7	H1	180.0°	175.4°
CA	N	C7	H4	60.0°	64.6°
CA	N	C7	H3	60.0°	55.5°
N	CA	CB	H7	55.6°	55.0°
N	CA	CB	H8	64.0°	175.0°
CA	CB	CG	H7	120.2°	120.0°
CA	CB	CG	H8	120.2°	119.9°
CB	CA	C	HA	119.7°	120.1°
CB	CA	C	O	50.5°	94.0°
CA	CB	CG	CD	161.4°	180.0°
CB	CA	C	OXT	132.3°	86.0°
CB	CA	N	H	176.4°	29.9°
CA	CB	H7	H8	119.5°	120.0°
CA	CB	CG	H9	41.6°	60.0°
CA	CB	CG	H10	78.8°	60.1°
CG	CB	CA	C	63.8°	175.0°
CB	CG	CD	OE2	37.2°	0.0°
CB	CG	CD	H9	119.9°	120.0°
CB	CG	CD	H10	119.8°	120.0°
CB	CG	CD	OE1	137.8°	180.0°
CG	CB	CA	HA	55.9°	55.0°
CG	CB	H7	H8	119.5°	120.0°
CB	CG	H9	H10	120.5°	120.1°
CA	C	O	OXT	176.8°	180.0°
C	CA	N	H	52.9°	149.9°
C	CA	CB	H7	176.0°	65.0°
C	CA	CB	H8	56.4°	55.0°
CA	C	OXT	HXT	177.2°	180.0°
OE2	CD	CG	OE1	175.0°	179.9°
OE2	CD	CG	H9	157.1°	120.0°
OE2	CD	CG	H10	82.6°	120.0°
OE2	CD	OE1	H11	0.0°	0.1°
O	C	CA	HA	170.2°	146.0°
O	C	OXT	HXT	0.0°	0.0°
CD	CG	CB	H7	78.4°	60.1°
CD	CG	CB	H8	41.2°	60.0°
CD	CG	H9	H10	120.5°	120.0°
CG	CD	OE1	H11	174.2°	180.0°
OE1	CD	CG	H9	17.9°	60.1°
OE1	CD	CG	H10	102.4°	59.9°
OXT	C	CA	HA	12.6°	34.0°
H1	C7	H4	H3	119.9°	120.0°
H1	C7	N	H	58.0°	60.7°
H4	C7	N	H	62.0°	59.3°
H3	C7	N	H	178.0°	179.3°
H	N	CA	HA	64.1°	90.1°
HA	CA	CB	H7	64.3°	175.0°
HA	CA	CB	H8	176.1°	64.9°
H7	CB	CG	H9	161.7°	NaN°
H7	CB	CG	H10	41.4°	59.9°
H8	CB	CG	H9	78.6°	59.9°
H8	CB	CG	H10	161.0°	180.0°

219140

PDB entries from 2024-05-01

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