Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

EKK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O3Csing1.43Å1.42Å
BRC6sing1.89Å1.88Å
CC1sing1.53Å1.51Å
C5C6doub1.34Å1.36ÅAromatic
C5Nsing1.37Å1.37ÅAromatic
C6C7sing1.46Å1.42ÅAromatic
C1Osing1.44Å1.44Å
C1C2sing1.54Å1.52Å
OC4sing1.44Å1.42Å
NC4sing1.46Å1.46Å
NC10sing1.37Å1.37ÅAromatic
C2O2sing1.43Å1.43Å
C2C3sing1.55Å1.53Å
C7C8doub1.40Å1.41ÅAromatic
C7C10sing1.41Å1.40ÅAromatic
N1C8sing1.38Å1.33Å
C4C3sing1.55Å1.53Å
C8N2sing1.33Å1.35ÅAromatic
C10N3doub1.33Å1.34ÅAromatic
C3O1sing1.43Å1.42Å
N2C9doub1.32Å1.33ÅAromatic
N3C9sing1.32Å1.33ÅAromatic
O3H1sing0.97Å0.95Å
C4H2sing1.09Å1.10Å
C5H3sing1.08Å1.08Å
N1H4sing0.97Å1.00Å
N1H5sing0.97Å1.00Å
C9H6sing1.08Å1.08Å
C3H7sing1.09Å1.10Å
O1H8sing0.97Å0.95Å
C2H9sing1.09Å1.10Å
O2H10sing0.97Å0.95Å
C1H11sing1.09Å1.10Å
CH12sing1.09Å1.10Å
CH13sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O3CC1112.1°109.4°
CO3H1109.5°114.0°
O3CH12108.8°109.4°
O3CH13108.9°109.5°
BRC6C5127.3°126.6°
BRC6C7124.0°126.6°
CC1O109.2°109.9°
CC1C2115.8°109.9°
CC1H11108.8°110.0°
C1CH12108.8°109.5°
C1CH13108.8°109.5°
C6C5N109.1°109.8°
C5C6C7108.6°106.8°
C6C5H3125.5°125.1°
C5NC4126.0°124.9°
C5NC10108.2°110.1°
NC5H3125.5°125.1°
C6C7C8136.9°135.1°
C6C7C10105.4°106.3°
OC1C2104.5°107.3°
C1OC4110.3°107.0°
OC1H11109.7°109.9°
C1C2O2111.4°110.5°
C1C2C3102.0°104.2°
C1C2H9109.7°110.6°
C2C1H11108.7°109.8°
OC4N108.1°110.8°
OC4C3107.1°103.5°
OC4H2110.1°110.6°
C4NC10125.8°125.0°
NC4C3113.5°110.6°
NC4H2109.5°110.5°
NC10C7108.8°107.1°
NC10N3126.7°134.3°
O2C2C3112.7°110.5°
O2C2H9111.0°110.4°
C2O2H10109.5°114.0°
C2C3C4101.2°102.1°
C2C3O1113.7°110.9°
C2C3H7110.3°111.0°
C3C2H9109.6°110.5°
C8C7C10117.7°118.6°
C7C8N1123.2°120.8°
C7C8N2117.8°118.3°
C7C10N3124.6°118.6°
N1C8N2119.0°120.8°
C8N1H4109.5°120.0°
C8N1H5109.5°120.0°
C4C3O1108.9°110.9°
C3C4H2108.6°110.6°
C4C3H7110.3°110.9°
C8N2C9118.5°121.0°
C10N3C9112.5°120.7°
O1C3H7111.9°110.8°
C3O1H8109.5°114.0°
N2C9N3128.9°122.7°
N2C9H6115.6°118.6°
N3C9H6115.5°118.7°
H4N1H5109.5°120.0°
H12CH13109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3CC1H12120.4°120.0°
O3CC1H13120.4°120.0°
O3CC1O62.4°66.5°
O3CC1C255.1°175.7°
O3CC1H11177.9°54.7°
O3CH12H13118.8°120.0°
BRC6C5C7177.4°180.0°
BRC6C5N176.5°180.0°
BRC6C7C83.2°0.0°
BRC6C7C10176.7°180.0°
BRC6C5H33.5°0.3°
CC1OC2124.5°119.4°
CC1OH11119.1°121.2°
CC1C2H11122.8°121.2°
CC1OC4143.8°145.9°
CC1C2O284.0°119.9°
CC1C2C3155.5°121.4°
C1CO3H1180.0°180.0°
CC1C2H939.4°2.7°
C1CH12H13118.8°120.0°
C6C5NH3180.0°179.7°
C6C5NC4179.2°180.0°
C6C5NC100.6°0.0°
C5C6C7C8179.3°180.0°
C5C6C7C100.8°0.0°
NC5C6C70.9°0.0°
C5NC4O21.4°19.2°
C5NC4C10179.8°180.0°
C5NC10C70.1°0.0°
C5NC4C397.2°95.0°
C5NC10N3179.9°180.0°
C5NC4H2141.3°142.2°
C6C7C10N0.4°0.0°
C6C7C8C10179.9°180.0°
C6C7C8N13.5°0.0°
C6C7C8N2178.7°180.0°
C6C7C10N3179.4°180.0°
C7C6C5H3179.1°179.7°
OC1C2H11117.0°119.4°
C1OC4N117.5°158.6°
OC1C2O2155.8°120.7°
OC1C2C335.3°2.0°
C1OC4C35.0°40.0°
C1OC4H2122.9°78.4°
OC1C2H980.8°116.7°
OC1CH12177.2°53.5°
OC1CH1358.0°173.5°
C2C1OC419.3°26.5°
C1C2O2C3114.0°114.8°
C1C2O2H9122.7°122.7°
C1C2C3H9116.2°118.8°
C1C2C3C437.2°20.9°
C1C2C3O179.4°139.1°
C1C2C3H7154.0°97.3°
C1C2O2H10180.0°65.2°
C2C1CH1265.2°64.3°
C2C1CH13175.6°55.7°
OC4NC3118.6°114.2°
OC4NH2120.0°123.0°
OC4NC10158.4°160.8°
OC4C3C226.8°37.0°
OC4C3H2118.8°118.5°
OC4C3O193.2°155.2°
OC4C3H7143.6°81.2°
C4OC1H1197.1°92.9°
NC4C3C292.4°155.7°
C4NC10C7179.7°180.0°
NC4C3H2122.0°122.8°
C4NC10N30.1°0.0°
NC4C3O1147.6°86.1°
C4NC5H30.8°0.3°
NC4C3H724.4°37.5°
NC10C7C8179.7°180.0°
NC10C7N3179.8°180.0°
C10NC4C383.1°85.0°
NC10N3C9179.2°180.0°
C10NC4H238.4°37.8°
C10NC5H3179.4°179.7°
O2C2C3H9124.2°122.5°
O2C2C3C4156.8°97.8°
O2C2C3O140.2°20.4°
O2C2C3H786.4°144.0°
O2C2C1H1138.7°1.3°
C2C3C4O1120.0°118.2°
C2C3C4H7116.8°118.3°
C2C3O1H7125.8°123.7°
C2C3C4H2145.6°81.5°
C2C3O1H8180.0°67.4°
C3C2O2H1066.0°180.0°
C3C2C1H1181.7°117.4°
C7C8N1N2177.8°180.0°
C8C7C10N30.5°0.0°
C7C8N2C90.7°0.0°
C7C8N1H4177.8°0.1°
C7C8N1H562.2°179.9°
C10C7C8N1176.6°180.0°
C10C7C8N21.2°0.0°
C7C10N3C90.5°0.0°
N1C8N2C9177.2°180.0°
C8N1H4H5120.0°179.9°
C4C3O1H7122.2°123.6°
C4C3O1H868.0°180.0°
C4C3C2H979.1°139.7°
C8N2C9N30.5°0.0°
N2C8N1H40.0°180.0°
N2C8N1H5120.0°0.1°
C8N2C9H6179.5°180.0°
C10N3C9N21.1°0.0°
C10N3C9H6178.9°180.0°
O1C3C4H225.6°36.7°
O1C3C2H9164.4°102.1°
N2C9N3H6180.0°180.0°
H1O3CH1259.6°60.0°
H1O3CH1359.6°60.0°
H2C4C3H797.6°160.3°
H7C3O1H854.2°56.3°
H7C3C2H937.8°21.5°
H9C2O2H1057.3°57.4°
H9C2C1H11162.2°123.9°
H11C1CH1257.5°174.6°
H11C1CH1361.7°65.3°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon