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Summary Geometry Related PDB entries

EI7

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	N	sing	1.21Å	1.40Å
O1	C1	sing	1.33Å	1.36Å
N	C	sing	1.35Å	1.46Å
C1	C5	sing	1.51Å	1.49Å
C1	C2	doub	1.36Å	1.34Å
C	O	doub	1.22Å	1.23Å
C	C2	sing	1.40Å	1.48Å
C5	N1	sing	1.47Å	1.46Å
N1	C4	sing	1.47Å	1.46Å
C2	C3	sing	1.50Å	1.50Å
C3	C4	sing	1.54Å	1.52Å
N1	H1	sing	1.01Å	1.00Å
C4	H3	sing	1.09Å	1.10Å
C4	H4	sing	1.09Å	1.10Å
C5	H5	sing	1.09Å	1.10Å
C5	H6	sing	1.09Å	1.10Å
N	H7	sing	0.97Å	1.00Å
C3	H8	sing	1.09Å	1.10Å
C3	H9	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N	O1	C1	108.1°	111.9°
O1	N	C	109.3°	110.7°
O1	N	H7	125.3°	124.7°
O1	C1	C5	126.1°	129.9°
O1	C1	C2	110.9°	107.3°
N	C	O	130.5°	127.4°
N	C	C2	101.8°	105.2°
C	N	H7	125.4°	124.6°
C5	C1	C2	123.0°	122.9°
C1	C5	N1	104.6°	108.3°
C1	C5	H5	110.7°	109.7°
C1	C5	H6	110.7°	109.7°
C1	C2	C	110.0°	104.9°
C1	C2	C3	122.9°	124.0°
O	C	C2	127.8°	127.4°
C	C2	C3	127.1°	131.1°
C5	N1	C4	110.5°	111.7°
C5	N1	H1	109.2°	111.0°
N1	C5	H5	110.7°	109.7°
N1	C5	H6	110.7°	109.7°
N1	C4	C3	112.6°	109.6°
C4	N1	H1	109.2°	111.1°
N1	C4	H3	108.7°	109.4°
N1	C4	H4	108.7°	109.4°
C2	C3	C4	110.3°	107.7°
C2	C3	H8	109.3°	109.8°
C2	C3	H9	109.3°	109.8°
C3	C4	H3	108.7°	109.5°
C3	C4	H4	108.7°	109.4°
C4	C3	H8	109.3°	109.8°
C4	C3	H9	109.3°	109.9°
H3	C4	H4	109.5°	109.5°
H5	C5	H6	109.5°	109.7°
H8	C3	H9	109.5°	109.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	N	C	H7	180.0°	180.0°
N	O1	C1	C5	180.0°	179.8°
N	O1	C1	C2	0.0°	0.2°
O1	N	C	O	179.8°	179.9°
O1	N	C	C2	0.0°	0.0°
C1	O1	N	C	0.0°	0.1°
O1	C1	C5	C2	180.0°	180.0°
O1	C1	C2	C	0.0°	0.2°
O1	C1	C5	N1	147.8°	163.3°
O1	C1	C2	C3	179.9°	179.8°
O1	C1	C5	H5	28.6°	43.7°
O1	C1	C5	H6	92.9°	77.0°
C1	O1	N	H7	180.0°	179.9°
N	C	C2	C1	0.0°	0.2°
N	C	O	C2	179.7°	180.0°
N	C	C2	C3	179.9°	179.8°
C5	C1	C2	C	180.0°	179.8°
C1	C5	N1	H5	119.2°	119.7°
C1	C5	N1	H6	119.2°	119.7°
C1	C5	N1	C4	63.7°	51.5°
C5	C1	C2	C3	0.1°	0.3°
C1	C5	N1	H1	56.4°	176.1°
C1	C5	H5	H6	122.3°	120.6°
C1	C2	C	O	179.8°	179.8°
C1	C2	C	C3	179.9°	180.0°
C2	C1	C5	N1	32.2°	16.6°
C1	C2	C3	C4	2.1°	15.4°
C2	C1	C5	H5	151.4°	136.3°
C2	C1	C5	H6	87.1°	103.1°
C1	C2	C3	H8	118.0°	104.2°
C1	C2	C3	H9	122.2°	135.0°
O	C	C2	C3	0.4°	0.2°
O	C	N	H7	0.2°	0.1°
C	C2	C3	C4	177.8°	164.6°
C2	C	N	H7	180.0°	180.0°
C	C2	C3	H8	62.1°	75.8°
C	C2	C3	H9	57.7°	45.0°
C5	N1	C4	H1	120.1°	124.5°
C5	N1	C4	C3	66.2°	71.2°
C5	N1	C4	H3	173.4°	48.9°
C5	N1	C4	H4	54.3°	168.8°
N1	C5	H5	H6	122.3°	120.6°
N1	C4	C3	C2	29.4°	48.5°
N1	C4	C3	H3	120.5°	120.0°
N1	C4	C3	H4	120.5°	120.0°
N1	C4	H3	H4	118.6°	119.9°
C4	N1	C5	H5	177.0°	171.2°
C4	N1	C5	H6	55.5°	68.2°
N1	C4	C3	H8	149.5°	71.0°
N1	C4	C3	H9	90.7°	168.0°
C2	C3	C4	H8	120.1°	119.5°
C2	C3	C4	H9	120.1°	119.5°
C2	C3	C4	H3	149.9°	71.6°
C2	C3	C4	H4	91.1°	168.5°
C2	C3	H8	H9	119.6°	120.8°
C3	C4	N1	H1	54.0°	164.3°
C3	C4	H3	H4	118.6°	119.9°
C4	C3	H8	H9	119.7°	121.0°
H1	N1	C4	H3	66.5°	75.6°
H1	N1	C4	H4	174.4°	44.3°
H1	N1	C5	H5	62.8°	64.2°
H1	N1	C5	H6	175.6°	56.3°
H3	C4	C3	H8	90.0°	168.9°
H3	C4	C3	H9	29.8°	48.0°
H4	C4	C3	H8	29.1°	49.0°
H4	C4	C3	H9	148.8°	72.0°

247536

PDB entries from 2026-01-14

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