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Summary Geometry Related PDB entries

EHM

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O4	C4	sing	1.42Å	1.43Å
O4	HO4	sing	0.97Å	0.95Å
C4	C3	sing	1.53Å	1.53Å
C4	H41	sing	1.09Å	1.10Å
C4	H42	sing	1.09Å	1.10Å
C3	O3	sing	1.43Å	1.43Å
C3	C2	sing	1.53Å	1.54Å
C3	H3	sing	1.10Å	1.10Å
O3	HO3	sing	0.97Å	0.95Å
C2	O2	sing	1.42Å	1.42Å
C2	C1	sing	1.52Å	1.50Å
C2	H2	sing	1.10Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C1	O1	doub	1.23Å	1.23Å
C1	N	sing	1.37Å	1.33Å
N	ON	sing	1.40Å	1.40Å
N	HN	sing	1.01Å	1.00Å
ON	HON	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C4	O4	HO4	109.5°	106.6°
O4	C4	C3	109.4°	109.9°
O4	C4	H41	109.5°	107.1°
O4	C4	H42	109.5°	107.9°
C3	C4	H41	109.5°	111.6°
C3	C4	H42	109.5°	111.5°
C4	C3	O3	109.8°	108.2°
C4	C3	C2	112.1°	112.2°
C4	C3	H3	107.4°	109.7°
H41	C4	H42	109.4°	108.8°
O3	C3	C2	109.2°	109.4°
O3	C3	H3	110.4°	106.4°
C3	O3	HO3	109.5°	106.3°
C2	C3	H3	108.0°	110.8°
C3	C2	O2	111.1°	109.6°
C3	C2	C1	109.6°	111.8°
C3	C2	H2	108.3°	109.8°
O2	C2	C1	109.6°	109.0°
O2	C2	H2	108.3°	107.9°
C2	O2	HO2	109.5°	106.9°
C1	C2	H2	109.9°	108.6°
C2	C1	O1	120.4°	122.5°
C2	C1	N	116.6°	112.6°
O1	C1	N	123.0°	125.0°
C1	N	ON	118.8°	116.0°
C1	N	HN	120.6°	122.0°
ON	N	HN	120.6°	122.0°
N	ON	HON	109.5°	100.1°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O4	C4	C3	H41	120.0°	118.6°
O4	C4	C3	H42	120.0°	119.6°
O4	C4	H41	H42	120.1°	116.4°
O4	C4	C3	O3	52.8°	60.6°
O4	C4	C3	C2	68.7°	178.6°
O4	C4	C3	H3	172.8°	55.1°
HO4	O4	C4	C3	166.4°	127.6°
HO4	O4	C4	H41	46.4°	6.3°
HO4	O4	C4	H42	73.6°	110.7°
C3	C4	H41	H42	120.0°	123.4°
C4	C3	O3	C2	123.2°	122.5°
C4	C3	O3	H3	118.2°	117.8°
C4	C3	C2	H3	118.1°	122.9°
C4	C3	O3	HO3	30.1°	89.7°
C4	C3	C2	O2	63.1°	62.0°
C4	C3	C2	C1	175.7°	177.1°
C4	C3	C2	H2	55.8°	56.5°
H41	C4	C3	O3	172.8°	179.1°
H41	C4	C3	C2	51.3°	60.0°
H41	C4	C3	H3	67.2°	63.5°
H42	C4	C3	O3	67.2°	59.0°
H42	C4	C3	C2	171.3°	61.8°
H42	C4	C3	H3	52.8°	174.6°
O3	C3	C2	H3	120.0°	117.0°
O3	C3	C2	O2	175.1°	177.9°
O3	C3	C2	C1	53.9°	57.0°
O3	C3	C2	H2	66.1°	63.7°
C2	C3	O3	HO3	93.1°	32.8°
C3	C2	O2	C1	121.2°	122.6°
C3	C2	O2	H2	118.9°	119.6°
C3	C2	C1	H2	118.9°	121.3°
C3	C2	O2	HO2	94.8°	55.4°
C3	C2	C1	O1	38.5°	59.2°
C3	C2	C1	N	141.4°	121.4°
H3	C3	O3	HO3	148.3°	152.5°
H3	C3	C2	O2	55.0°	60.9°
H3	C3	C2	C1	66.2°	60.0°
H3	C3	C2	H2	173.9°	179.4°
O2	C2	C1	H2	118.9°	117.4°
O2	C2	C1	O1	83.6°	62.1°
O2	C2	C1	N	96.5°	117.3°
C1	C2	O2	HO2	26.4°	67.2°
C2	C1	O1	N	179.9°	179.3°
C2	C1	N	ON	170.7°	179.4°
C2	C1	N	HN	9.3°	0.6°
H2	C2	O2	HO2	146.3°	175.0°
H2	C2	C1	O1	157.5°	179.4°
H2	C2	C1	N	22.5°	0.0°
O1	C1	N	ON	9.4°	0.0°
O1	C1	N	HN	170.7°	180.0°
C1	N	ON	HN	180.0°	180.0°
C1	N	ON	HON	52.6°	95.8°
HN	N	ON	HON	127.4°	84.2°

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