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EFG

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O6C6doub1.22Å1.23Å
OP2Psing1.61Å1.47Å
C6C5sing1.46Å1.35Å
C6N1sing1.35Å1.39Å
N7C5sing1.36Å1.33ÅAromatic
N7C8doub1.30Å1.33ÅAromatic
POP1doub1.48Å1.48Å
PO5'sing1.61Å1.59Å
C5C4doub1.39Å1.34ÅAromatic
N1C2sing1.38Å1.38Å
C8N9sing1.36Å1.33ÅAromatic
O5'C5'sing1.43Å1.44Å
FC2'sing1.40Å1.39Å
C4N9sing1.36Å1.33ÅAromatic
C4N3sing1.38Å1.34Å
N9C1'sing1.46Å1.50Å
C2N3sing1.36Å1.33ÅAromatic
C2N2doub1.32Å1.33ÅAromatic
N3C9sing1.38Å1.33ÅAromatic
C5'C4'sing1.53Å1.54Å
N2C10sing1.34Å1.32ÅAromatic
C2'C1'sing1.54Å1.52Å
C2'C3'sing1.55Å1.51Å
C1'O4'sing1.44Å1.47Å
C9C10doub1.34Å1.34ÅAromatic
C3'C4'sing1.55Å1.55Å
C3'O3'sing1.43Å1.40Å
O4'C4'sing1.44Å1.47Å
N1H1sing0.97Å1.00Å
C10H9sing1.08Å1.08Å
C9H10sing1.08Å1.08Å
C8H8sing1.08Å1.08Å
C1'H1'sing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5''sing1.09Å1.10Å
POP3sing1.61Å47.71Å
OP3HOP3sing0.97Å0.00Å
OP2HOP2sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O6C6C5122.3°120.5°
O6C6N1117.8°120.5°
OP2POP1119.4°109.5°
OP2PO5'111.9°109.5°
OP2POP329.9°109.4°
POP2HOP2109.5°114.0°
C5C6N1119.9°118.9°
C6C5N7131.5°133.8°
C6C5C4121.1°118.7°
C6N1C2118.2°120.8°
C6N1H1120.9°119.7°
C5N7C8107.9°109.1°
N7C5C4107.4°107.4°
N7C8N9109.1°109.5°
N7C8H8125.5°125.2°
OP1PO5'107.1°109.5°
OP1POP3109.6°109.5°
PO5'C5'120.6°123.0°
O5'POP3138.2°109.5°
C5C4N9108.7°106.4°
C5C4N3118.3°119.7°
N1C2N3118.6°121.0°
N1C2N2132.5°130.9°
C2N1H1120.9°119.6°
C8N9C4106.9°107.6°
C8N9C1'126.1°126.2°
N9C8H8125.4°125.3°
O5'C5'C4'110.0°109.4°
O5'C5'H5'109.4°109.5°
O5'C5'H5''109.3°109.5°
FC2'C1'114.9°110.5°
FC2'C3'102.6°110.5°
FC2'H2'112.0°110.6°
N9C4N3133.0°133.9°
C4N9C1'126.9°126.2°
C4N3C2123.9°120.9°
C4N3C9128.9°132.0°
N9C1'C2'117.8°110.4°
N9C1'O4'104.1°110.3°
N9C1'H1'108.9°110.3°
N3C2N2108.9°108.1°
C2N3C9107.2°107.2°
C2N2C10108.1°109.4°
N3C9C10108.4°106.9°
N3C9H10125.8°126.6°
C5'C4'C3'110.5°110.3°
C5'C4'O4'114.1°110.4°
C5'C4'H4'108.4°110.5°
C4'C5'H5'109.3°109.5°
C4'C5'H5''109.4°109.5°
N2C10C9107.4°108.4°
N2C10H9126.3°125.8°
C1'C2'C3'106.6°104.1°
C2'C1'O4'107.8°104.8°
C2'C1'H1'108.5°110.5°
C1'C2'H2'110.0°110.5°
C2'C3'C4'106.0°104.1°
C2'C3'O3'108.7°110.5°
C3'C2'H2'110.3°110.6°
C2'C3'H3'111.1°110.6°
C1'O4'C4'109.7°105.2°
O4'C1'H1'109.3°110.3°
C9C10H9126.3°125.8°
C10C9H10125.8°126.5°
C4'C3'O3'107.3°110.5°
C3'C4'O4'106.1°104.8°
C4'C3'H3'110.6°110.5°
C3'C4'H4'108.3°110.4°
O3'C3'H3'112.8°110.6°
C3'O3'HO3'109.5°114.0°
O4'C4'H4'109.3°110.4°
H5'C5'H5''109.5°109.4°
POP3HOP390.0°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O6C6C5N1179.6°179.7°
O6C6C5N70.9°0.0°
O6C6C5C4179.6°179.7°
O6C6N1C2179.8°180.0°
O6C6N1H10.3°0.0°
OP2POP1O5'128.3°120.0°
OP2POP1OP331.1°120.0°
OP2PO5'OP317.7°120.0°
OP2PO5'C5'168.8°65.0°
OP2POP3HOP390.0°60.0°
C6C5N7C4179.6°179.7°
C6C5N7C8179.2°180.0°
C5C6N1C20.2°0.3°
C6C5C4N9180.0°179.7°
C6C5C4N30.0°0.6°
C5C6N1H1179.8°179.7°
N1C6C5N7179.6°179.7°
N1C6C5C40.0°0.6°
C6N1C2H1180.0°179.9°
C6N1C2N30.4°0.1°
C6N1C2N2179.7°180.0°
C5N7C8N90.9°0.5°
N7C5C4N90.3°0.1°
N7C5C4N3179.7°179.6°
C5N7C8H8179.1°180.0°
C8N7C5C40.4°0.2°
N7C8N9H8180.0°179.5°
N7C8N9C41.1°0.6°
N7C8N9C1'177.4°179.9°
OP1PO5'OP3150.3°120.1°
OP1PO5'C5'58.6°55.0°
OP1POP3HOP390.0°60.0°
OP1POP2HOP20.0°180.0°
PO5'C5'C4'172.0°180.0°
PO5'C5'H5'51.9°60.0°
PO5'C5'H5''67.9°60.0°
O5'POP3HOP390.0°180.0°
O5'POP2HOP2126.1°60.0°
C5C4N9C80.9°0.4°
C5C4N9N3180.0°179.7°
C5C4N9C1'177.2°179.7°
C5C4N3C20.2°0.3°
C5C4N3C9179.2°179.7°
N1C2N3C40.4°0.1°
N1C2N3N2179.5°180.0°
N1C2N3C9179.6°180.0°
N1C2N2C10179.8°180.0°
C8N9C4C1'176.3°179.3°
C8N9C4N3179.1°179.3°
C8N9C1'C2'57.1°91.1°
C8N9C1'O4'62.3°24.3°
C8N9C1'H1'178.8°146.5°
O5'C5'C4'H5'120.1°120.0°
O5'C5'C4'H5''120.1°120.0°
O5'C5'C4'C3'25.1°178.2°
O5'C5'C4'O4'94.3°66.5°
O5'C5'C4'H4'143.7°55.9°
O5'C5'H5'H5''119.8°120.0°
C5'O5'POP3151.1°175.0°
FC2'C1'N98.0°24.2°
FC2'C1'C3'112.9°118.6°
FC2'C1'H2'127.5°122.7°
FC2'C3'H2'119.5°122.7°
FC2'C1'O4'109.4°94.7°
FC2'C3'C4'107.1°118.7°
FC2'C3'O3'137.9°122.7°
FC2'C1'H1'132.2°146.5°
FC2'C3'H3'13.2°0.0°
N9C4N3C2179.8°180.0°
N9C4N3C90.8°0.0°
C4N9C1'C2'127.4°88.1°
C4N9C1'O4'113.3°156.5°
C4N9C8H8178.9°179.9°
C4N9C1'H1'3.3°34.3°
N3C4N9C1'2.8°0.0°
C4N3C2C9179.2°180.0°
C4N3C2N2179.9°180.0°
C4N3C9C10179.8°180.0°
C4N3C9H100.2°0.0°
N9C1'C2'O4'117.4°118.8°
N9C1'C2'H1'124.3°122.3°
N9C1'C2'C3'120.8°142.8°
N9C1'O4'H1'116.2°122.1°
N9C1'O4'C4'116.6°159.4°
C1'N9C8H82.6°0.6°
N9C1'C2'H2'119.6°98.5°
N3C2N2C100.8°0.0°
C2N3C9C100.7°0.0°
N3C2N1H1179.7°180.0°
C2N3C9H10179.3°180.0°
N2C2N3C90.9°0.0°
C2N2C10C90.4°0.0°
N2C2N1H10.3°0.0°
C2N2C10H9179.6°180.0°
N3C9C10N20.2°0.0°
N3C9C10H10180.0°180.0°
N3C9C10H9179.8°180.0°
C5'C4'C3'C2'104.5°142.8°
C5'C4'O4'C1'103.9°159.3°
C5'C4'C3'O4'124.1°118.8°
C5'C4'C3'H4'118.6°122.4°
C5'C4'C3'O3'139.5°98.6°
C5'C4'O4'H4'121.5°122.4°
C5'C4'C3'H3'16.1°24.1°
C4'C5'H5'H5''119.8°120.0°
N2C10C9H9180.0°180.0°
N2C10C9H10179.8°180.0°
C1'C2'C3'H2'119.4°118.7°
C2'C1'O4'H1'117.9°119.0°
C1'C2'C3'C4'14.0°0.1°
C1'C2'C3'O3'101.0°118.6°
C2'C1'O4'C4'9.3°40.5°
C1'C2'C3'H3'134.3°118.6°
C3'C2'C1'O4'3.5°24.0°
C2'C3'C4'O3'116.0°118.6°
C2'C3'C4'H3'120.6°118.7°
C2'C3'O3'H3'123.7°122.7°
C2'C3'C4'O4'19.6°24.1°
C3'C2'C1'H1'114.9°94.9°
C2'C3'O3'HO3'180.0°61.5°
C2'C3'C4'H4'136.9°94.8°
C1'O4'C4'C3'17.9°40.6°
O4'C1'C2'H2'123.1°142.7°
C1'O4'C4'H4'134.6°78.3°
C4'C3'O3'H3'122.0°122.7°
C3'C4'O4'H4'116.6°118.8°
C4'C3'C2'H2'133.5°118.6°
C4'C3'O3'HO3'65.8°176.1°
C3'C4'C5'H5'95.0°58.2°
C3'C4'C5'H5''145.2°61.8°
O3'C3'C4'O4'96.4°142.6°
O3'C3'C2'H2'18.4°0.0°
O3'C3'C4'H4'20.9°23.8°
C4'O4'C1'H1'127.1°78.5°
O4'C4'C3'H3'140.2°94.7°
O4'C4'C5'H5'145.6°173.5°
O4'C4'C5'H5''25.8°53.5°
H9C10C9H100.2°0.0°
H1'C1'C2'H2'4.7°23.8°
H2'C2'C3'H3'106.3°122.7°
H3'C3'O3'HO3'56.3°61.3°
H3'C3'C4'H4'102.5°146.5°
H4'C4'C5'H5'23.6°64.1°
H4'C4'C5'H5''96.3°175.9°
OP3POP2HOP278.0°59.9°

223532

PDB entries from 2024-08-07

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