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Summary Geometry Related PDB entries

EDO

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	O1	sing	1.43Å	1.53Å
C1	C2	sing	1.53Å	1.54Å
C1	H11	sing	1.09Å	1.12Å
C1	H12	sing	1.09Å	1.11Å
O1	HO1	sing	0.97Å	0.95Å
C2	O2	sing	1.43Å	1.57Å
C2	H21	sing	1.09Å	1.12Å
C2	H22	sing	1.09Å	1.11Å
O2	HO2	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	C2	115.8°	109.5°
O1	C1	H11	109.9°	109.4°
O1	C1	H12	109.9°	109.5°
C1	O1	HO1	115.8°	106.9°
C2	C1	H11	109.8°	109.5°
C2	C1	H12	109.9°	109.5°
C1	C2	O2	108.6°	109.5°
C1	C2	H21	112.5°	109.5°
C1	C2	H22	112.6°	109.5°
H11	C1	H12	100.3°	109.4°
O2	C2	H21	112.5°	109.5°
O2	C2	H22	112.5°	109.4°
C2	O2	HO2	108.7°	106.9°
H21	C2	H22	97.9°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	C2	H11	125.3°	120.0°
O1	C1	C2	H12	125.3°	120.1°
O1	C1	H11	H12	115.7°	119.9°
O1	C1	C2	O2	58.2°	60.0°
O1	C1	C2	H21	176.5°	180.0°
O1	C1	C2	H22	67.0°	60.0°
C2	C1	H11	H12	115.7°	120.0°
C2	C1	O1	HO1	180.0°	180.0°
C1	C2	O2	H21	125.3°	120.1°
C1	C2	O2	H22	125.3°	120.0°
C1	C2	H21	H22	118.5°	120.0°
C1	C2	O2	HO2	180.0°	180.0°
H11	C1	O1	HO1	54.8°	60.0°
H11	C1	C2	O2	67.0°	60.0°
H11	C1	C2	H21	58.2°	60.1°
H11	C1	C2	H22	167.8°	180.0°
H12	C1	O1	HO1	54.7°	59.9°
H12	C1	C2	O2	176.4°	180.0°
H12	C1	C2	H21	51.2°	59.9°
H12	C1	C2	H22	58.3°	60.1°
O2	C2	H21	H22	118.4°	119.9°
H21	C2	O2	HO2	54.7°	59.9°
H22	C2	O2	HO2	54.7°	60.0°

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PDB entries from 2024-04-10

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