EDG
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O2' | C2' | sing | 1.43Å | 1.45Å | |
C2' | C1' | sing | 1.54Å | 1.54Å | |
C2' | C3' | sing | 1.54Å | 1.53Å | |
C1' | N4' | sing | 1.48Å | 1.46Å | |
N4' | C4' | sing | 1.49Å | 1.44Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | C4' | sing | 1.54Å | 1.54Å | |
C4' | C5' | sing | 1.53Å | 1.53Å | |
C5' | O5' | sing | 1.43Å | 1.43Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C1' | H1'1 | sing | 1.09Å | 1.10Å | |
C1' | H1'2 | sing | 1.09Å | 1.10Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
N4' | HN4' | sing | 1.01Å | 1.00Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C5' | H5'1 | sing | 1.09Å | 1.10Å | |
C5' | H5'2 | sing | 1.09Å | 1.10Å | |
O5' | HO5' | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O2' | C2' | C1' | 109.6° | 110.3° |
O2' | C2' | C3' | 113.4° | 110.3° |
C2' | O2' | HO2' | 109.5° | 114.0° |
O2' | C2' | H2' | 105.3° | 110.3° |
C1' | C2' | C3' | 104.9° | 105.0° |
C2' | C1' | N4' | 104.2° | 104.6° |
C1' | C2' | H2' | 113.8° | 110.3° |
C2' | C1' | H1'1 | 111.3° | 110.4° |
C2' | C1' | H1'2 | 112.4° | 110.3° |
C2' | C3' | O3' | 112.3° | 110.3° |
C2' | C3' | C4' | 105.7° | 105.0° |
C3' | C2' | H2' | 110.0° | 110.4° |
C2' | C3' | H3' | 109.7° | 110.3° |
C1' | N4' | C4' | 108.9° | 104.2° |
N4' | C1' | H1'1 | 111.3° | 110.4° |
N4' | C1' | H1'2 | 112.4° | 110.4° |
C1' | N4' | HN4' | 109.7° | 111.0° |
N4' | C4' | C3' | 101.8° | 104.6° |
N4' | C4' | C5' | 113.4° | 110.4° |
C4' | N4' | HN4' | 109.7° | 111.0° |
N4' | C4' | H4' | 114.5° | 110.5° |
O3' | C3' | C4' | 108.0° | 110.3° |
O3' | C3' | H3' | 107.4° | 110.3° |
C3' | O3' | HO3' | 109.5° | 114.0° |
C3' | C4' | C5' | 116.0° | 110.4° |
C4' | C3' | H3' | 113.9° | 110.5° |
C3' | C4' | H4' | 111.9° | 110.4° |
C4' | C5' | O5' | 108.7° | 109.5° |
C5' | C4' | H4' | 99.9° | 110.4° |
C4' | C5' | H5'1 | 109.7° | 109.5° |
C4' | C5' | H5'2 | 109.9° | 109.5° |
O5' | C5' | H5'1 | 109.7° | 109.5° |
O5' | C5' | H5'2 | 109.9° | 109.4° |
C5' | O5' | HO5' | 109.5° | 114.0° |
H1'1 | C1' | H1'2 | 105.5° | 110.4° |
H5'1 | C5' | H5'2 | 108.9° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O2' | C2' | C1' | C3' | 122.1° | 118.9° |
O2' | C2' | C1' | H2' | 117.6° | 122.1° |
O2' | C2' | C3' | H2' | 117.7° | 122.2° |
O2' | C2' | C1' | N4' | 111.4° | 95.0° |
O2' | C2' | C3' | O3' | 110.5° | 122.2° |
O2' | C2' | C3' | C4' | 132.0° | 118.9° |
O2' | C2' | C1' | H1'1 | 128.6° | 146.1° |
O2' | C2' | C1' | H1'2 | 10.5° | 23.7° |
O2' | C2' | C3' | H3' | 8.8° | 0.1° |
C1' | C2' | C3' | H2' | 122.7° | 118.9° |
C2' | C1' | N4' | H1'1 | 120.0° | 118.8° |
C2' | C1' | N4' | H1'2 | 121.9° | 118.7° |
C2' | C1' | N4' | C4' | 32.3° | 39.5° |
C1' | C2' | C3' | O3' | 129.9° | 118.9° |
C1' | C2' | C3' | C4' | 12.4° | 0.0° |
C1' | C2' | O2' | HO2' | 120.5° | 61.4° |
C2' | C1' | H1'1 | H1'2 | 122.1° | 122.3° |
C1' | C2' | C3' | H3' | 110.8° | 119.0° |
C2' | C1' | N4' | HN4' | 152.2° | 159.1° |
C3' | C2' | C1' | N4' | 10.7° | 23.9° |
C2' | C3' | C4' | N4' | 31.0° | 23.9° |
C2' | C3' | O3' | C4' | 116.1° | 115.6° |
C2' | C3' | O3' | H3' | 120.7° | 122.1° |
C2' | C3' | C4' | H3' | 120.4° | 118.9° |
C2' | C3' | C4' | C5' | 154.6° | 142.6° |
C3' | C2' | O2' | HO2' | 122.7° | 177.1° |
C3' | C2' | C1' | H1'1 | 109.3° | 94.9° |
C3' | C2' | C1' | H1'2 | 132.6° | 142.7° |
C2' | C3' | C4' | H4' | 91.7° | 95.0° |
C2' | C3' | O3' | HO3' | 138.7° | 61.5° |
C1' | N4' | C4' | HN4' | 120.0° | 119.5° |
C1' | N4' | C4' | C3' | 39.7° | 39.5° |
C1' | N4' | C4' | C5' | 165.0° | 158.3° |
N4' | C1' | C2' | H2' | 131.0° | 142.8° |
N4' | C1' | H1'1 | H1'2 | 122.2° | 122.5° |
C1' | N4' | C4' | H4' | 81.2° | 79.3° |
N4' | C4' | C3' | O3' | 151.4° | 142.7° |
N4' | C4' | C3' | C5' | 123.6° | 118.8° |
N4' | C4' | C3' | H4' | 122.7° | 118.8° |
N4' | C4' | C5' | H4' | 122.3° | 122.4° |
N4' | C4' | C5' | O5' | 72.8° | 66.5° |
C4' | N4' | C1' | H1'1 | 87.7° | 79.3° |
C4' | N4' | C1' | H1'2 | 154.2° | 158.2° |
N4' | C4' | C3' | H3' | 89.4° | 95.1° |
N4' | C4' | C5' | H5'1 | 47.2° | 53.6° |
N4' | C4' | C5' | H5'2 | 166.9° | 173.5° |
O3' | C3' | C4' | H3' | 119.2° | 122.2° |
O3' | C3' | C4' | C5' | 85.0° | 98.5° |
O3' | C3' | C2' | H2' | 7.2° | 0.0° |
O3' | C3' | C4' | H4' | 28.7° | 23.9° |
C3' | C4' | C5' | H4' | 120.4° | 122.4° |
C3' | C4' | C5' | O5' | 169.9° | 178.3° |
C4' | C3' | C2' | H2' | 110.4° | 118.9° |
C3' | C4' | N4' | HN4' | 159.7° | 159.1° |
C4' | C3' | O3' | HO3' | 22.5° | 177.0° |
C3' | C4' | C5' | H5'1 | 70.1° | 61.6° |
C3' | C4' | C5' | H5'2 | 49.6° | 58.4° |
C4' | C5' | O5' | H5'1 | 120.0° | 120.0° |
C4' | C5' | O5' | H5'2 | 120.3° | 120.0° |
C5' | C4' | C3' | H3' | 34.2° | 23.7° |
C5' | C4' | N4' | HN4' | 75.0° | 82.2° |
C4' | C5' | H5'1 | H5'2 | 120.3° | 120.0° |
C4' | C5' | O5' | HO5' | 136.0° | 180.0° |
O5' | C5' | C4' | H4' | 49.5° | 56.0° |
O5' | C5' | H5'1 | H5'2 | 120.3° | 120.0° |
HO2' | O2' | C2' | H2' | 2.3° | 60.7° |
H2' | C2' | C1' | H1'1 | 11.0° | 24.0° |
H2' | C2' | C1' | H1'2 | 107.1° | 98.4° |
H2' | C2' | C3' | H3' | 126.5° | 122.1° |
H1'1 | C1' | N4' | HN4' | 32.3° | 40.3° |
H1'2 | C1' | N4' | HN4' | 85.8° | 82.2° |
H3' | C3' | C4' | H4' | 147.9° | 146.1° |
H3' | C3' | O3' | HO3' | 100.7° | 60.6° |
HN4' | N4' | C4' | H4' | 38.8° | 40.3° |
H4' | C4' | C5' | H5'1 | 169.5° | 176.0° |
H4' | C4' | C5' | H5'2 | 70.8° | 64.0° |
H5'1 | C5' | O5' | HO5' | 16.0° | 60.0° |
H5'2 | C5' | O5' | HO5' | 103.8° | 60.0° |