EDA

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	OP1	doub	1.48Å	1.48Å
P	OP2	sing	1.61Å	1.48Å
P	OP3	sing	1.61Å	1.60Å
P	O5'	sing	1.61Å	1.59Å
OP2	HOP2	sing	0.97Å	0.95Å
OP3	HOP3	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.43Å
N9	C4	sing	1.24Å	1.38Å	Aromatic
N9	C8	sing	1.40Å	1.39Å	Aromatic
N9	C1'	sing	1.47Å	1.46Å
C4	N3	sing	1.34Å	1.35Å	Aromatic
C4	C5	doub	1.39Å	1.39Å	Aromatic
N3	C2	doub	1.30Å	1.33Å	Aromatic
C2	N1	sing	1.39Å	1.37Å	Aromatic
C2	H2	sing	1.08Å	1.10Å
N1	C6	sing	1.41Å	1.37Å	Aromatic
N1	C10	sing	1.22Å	1.41Å	Aromatic
C6	N6	doub	1.30Å	1.33Å	Aromatic
C6	C5	sing	1.46Å	1.41Å	Aromatic
C10	C11	doub	1.34Å	1.36Å	Aromatic
C10	H10	sing	1.08Å	1.10Å
C11	N6	sing	1.36Å	1.40Å	Aromatic
C11	H11	sing	1.08Å	1.10Å
C5	N7	sing	1.36Å	1.40Å	Aromatic
N7	C8	doub	1.30Å	1.32Å	Aromatic
C8	H8	sing	1.08Å	1.10Å
C2'	C1'	sing	1.54Å	1.52Å
C2'	C3'	sing	1.54Å	1.52Å
C2'	H2'	sing	1.09Å	1.11Å
C2'	H2''	sing	1.09Å	1.11Å
C5'	C4'	sing	1.53Å	1.51Å
C5'	H5'	sing	1.09Å	1.12Å
C5'	H5''	sing	1.09Å	1.12Å
C4'	O4'	sing	1.45Å	1.44Å
C4'	C3'	sing	1.54Å	1.53Å
C4'	H4'	sing	1.09Å	1.12Å
O4'	C1'	sing	1.44Å	1.42Å
C1'	H1'	sing	1.09Å	1.11Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	H3'	sing	1.09Å	1.12Å
O3'	HO3'	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP1	P	OP2	119.5°	109.4°
OP1	P	OP3	109.7°	109.5°
OP1	P	O5'	109.0°	109.5°
OP2	P	OP3	105.8°	109.5°
OP2	P	O5'	108.1°	109.5°
P	OP2	HOP2	119.4°	106.8°
OP3	P	O5'	103.6°	109.5°
P	OP3	HOP3	109.8°	106.9°
P	O5'	C5'	121.7°	106.8°
O5'	C5'	C4'	109.7°	109.5°
O5'	C5'	H5'	112.2°	109.5°
O5'	C5'	H5''	112.1°	109.5°
C4	N9	C8	104.7°	109.7°
C4	N9	C1'	128.0°	109.5°
N9	C4	N3	126.9°	132.1°
N9	C4	C5	106.2°	107.7°
C8	N9	C1'	127.3°	109.4°
N9	C8	N7	115.1°	108.2°
N9	C8	H8	124.7°	126.0°
N9	C1'	C2'	113.7°	110.4°
N9	C1'	O4'	107.0°	110.4°
N9	C1'	H1'	107.6°	110.3°
N3	C4	C5	126.9°	120.2°
C4	N3	C2	112.2°	123.1°
C4	C5	C6	117.8°	116.9°
C4	C5	N7	111.5°	107.7°
N3	C2	N1	126.5°	119.7°
N3	C2	H2	115.4°	120.1°
N1	C2	H2	118.1°	120.2°
C2	N1	C6	120.7°	117.7°
C2	N1	C10	137.0°	114.9°
C6	N1	C10	102.3°	109.1°
N1	C6	N6	117.7°	105.8°
N1	C6	C5	115.9°	115.0°
N1	C10	C11	106.6°	108.6°
N1	C10	H10	128.0°	125.7°
N6	C6	C5	126.4°	139.1°
C6	N6	C11	100.1°	106.1°
C6	C5	N7	130.7°	135.4°
C11	C10	H10	125.3°	125.7°
C10	C11	N6	113.3°	108.2°
C10	C11	H11	122.2°	125.9°
N6	C11	H11	124.5°	125.9°
C5	N7	C8	102.6°	106.7°
N7	C8	H8	120.2°	125.9°
C1'	C2'	C3'	103.8°	104.0°
C1'	C2'	H2'	114.3°	110.5°
C1'	C2'	H2''	114.4°	110.5°
C2'	C1'	O4'	107.0°	104.8°
C2'	C1'	H1'	107.6°	110.3°
C3'	C2'	H2'	114.3°	110.5°
C3'	C2'	H2''	114.3°	110.5°
C2'	C3'	C4'	102.9°	104.2°
C2'	C3'	O3'	110.2°	110.5°
C2'	C3'	H3'	113.7°	110.5°
H2'	C2'	H2''	96.2°	110.6°
C4'	C5'	H5'	112.1°	109.5°
C4'	C5'	H5''	112.1°	109.4°
C5'	C4'	O4'	107.5°	110.4°
C5'	C4'	C3'	113.6°	110.7°
C5'	C4'	H4'	106.8°	110.3°
H5'	C5'	H5''	98.3°	109.4°
O4'	C4'	C3'	105.5°	104.7°
O4'	C4'	H4'	114.7°	110.4°
C4'	O4'	C1'	110.7°	105.3°
C3'	C4'	H4'	108.8°	110.2°
C4'	C3'	O3'	110.9°	110.5°
C4'	C3'	H3'	113.0°	110.5°
O4'	C1'	H1'	114.2°	110.4°
O3'	C3'	H3'	106.1°	110.4°
C3'	O3'	HO3'	110.2°	106.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP1	P	OP2	OP3	124.2°	120.0°
OP1	P	OP2	O5'	125.4°	120.0°
OP1	P	OP3	O5'	116.3°	120.0°
OP1	P	OP2	HOP2	180.0°	60.0°
OP1	P	OP3	HOP3	179.9°	180.0°
OP1	P	O5'	C5'	56.6°	60.0°
OP2	P	OP3	O5'	113.6°	120.0°
OP2	P	OP3	HOP3	50.0°	60.0°
OP2	P	O5'	C5'	172.1°	180.0°
OP3	P	OP2	HOP2	55.8°	60.0°
OP3	P	O5'	C5'	60.2°	60.0°
O5'	P	OP2	HOP2	54.6°	180.0°
O5'	P	OP3	HOP3	63.6°	60.0°
P	O5'	C5'	C4'	161.5°	180.0°
P	O5'	C5'	H5'	73.2°	60.0°
P	O5'	C5'	H5''	36.3°	60.0°
O5'	C5'	C4'	H5'	125.3°	120.0°
O5'	C5'	C4'	H5''	125.3°	120.1°
O5'	C5'	H5'	H5''	118.0°	120.1°
O5'	C5'	C4'	O4'	60.7°	61.4°
O5'	C5'	C4'	C3'	55.7°	176.9°
O5'	C5'	C4'	H4'	175.7°	60.8°
C4	N9	C8	C1'	179.8°	120.1°
N9	C4	N3	C5	179.8°	179.0°
N9	C4	N3	C2	179.4°	169.8°
N9	C4	C5	C6	178.9°	178.7°
N9	C4	C5	N7	0.6°	0.6°
C4	N9	C8	N7	0.2°	0.5°
C4	N9	C8	H8	179.8°	179.6°
C4	N9	C1'	C2'	64.8°	67.5°
C4	N9	C1'	O4'	177.3°	47.9°
C4	N9	C1'	H1'	54.2°	170.3°
C8	N9	C4	N3	180.0°	179.8°
C8	N9	C4	C5	0.2°	0.7°
N9	C8	N7	C5	0.5°	0.1°
N9	C8	N7	H8	180.0°	179.9°
C8	N9	C1'	C2'	114.9°	172.2°
C8	N9	C1'	O4'	3.0°	72.3°
C8	N9	C1'	H1'	126.1°	50.0°
C1'	N9	C4	N3	0.2°	59.7°
C1'	N9	C4	C5	180.0°	119.4°
C1'	N9	C8	N7	179.6°	119.6°
C1'	N9	C8	H8	0.4°	60.3°
N9	C1'	C2'	O4'	117.9°	118.9°
N9	C1'	C2'	H1'	119.0°	122.2°
N9	C1'	C2'	C3'	139.7°	142.9°
N9	C1'	C2'	H2'	95.1°	24.3°
N9	C1'	C2'	H2''	14.5°	98.4°
N9	C1'	O4'	C4'	125.7°	159.3°
N9	C1'	O4'	H1'	118.9°	122.3°
C4	N3	C2	N1	0.4°	0.3°
C4	N3	C2	H2	179.6°	179.7°
N3	C4	C5	C6	0.9°	0.6°
N3	C4	C5	N7	179.6°	179.9°
C5	C4	N3	C2	0.3°	11.2°
C4	C5	C6	N1	0.7°	21.5°
C4	C5	C6	N6	179.2°	159.8°
C4	C5	C6	N7	179.4°	179.0°
C4	C5	N7	C8	0.6°	0.3°
N3	C2	N1	H2	180.0°	180.0°
N3	C2	N1	C6	0.5°	22.1°
N3	C2	N1	C10	179.5°	152.7°
C2	N1	C6	C10	180.0°	133.3°
C2	N1	C6	N6	179.8°	148.7°
C2	N1	C6	C5	0.1°	32.1°
C2	N1	C10	C11	179.8°	146.1°
C2	N1	C10	H10	0.2°	34.0°
H2	C2	N1	C6	179.5°	157.9°
H2	C2	N1	C10	0.5°	27.3°
N1	C6	N6	C5	179.9°	178.9°
C6	N1	C10	C11	0.1°	11.5°
C6	N1	C10	H10	179.9°	168.6°
N1	C6	N6	C11	0.1°	12.4°
N1	C6	C5	N7	179.9°	159.5°
C10	N1	C6	N6	0.2°	15.5°
C10	N1	C6	C5	179.9°	165.4°
N1	C10	C11	H10	180.0°	179.9°
N1	C10	C11	N6	0.1°	3.7°
N1	C10	C11	H11	179.9°	176.3°
C6	N6	C11	C10	0.0°	6.2°
C6	N6	C11	H11	180.0°	173.8°
N6	C6	C5	N7	0.2°	19.3°
C5	C6	N6	C11	180.0°	168.8°
C6	C5	N7	C8	178.8°	178.8°
C10	C11	N6	H11	180.0°	180.0°
H10	C10	C11	N6	179.9°	176.4°
H10	C10	C11	H11	0.1°	3.6°
C5	N7	C8	H8	179.5°	180.0°
C1'	C2'	C3'	H2'	125.2°	118.6°
C1'	C2'	C3'	H2''	125.3°	118.6°
C1'	C2'	H2'	H2''	120.3°	122.7°
C2'	C1'	O4'	C4'	3.4°	40.4°
C1'	C2'	C3'	C4'	30.6°	0.1°
C2'	C1'	O4'	H1'	118.9°	118.8°
C1'	C2'	C3'	O3'	87.7°	118.7°
C1'	C2'	C3'	H3'	153.3°	118.8°
C3'	C2'	H2'	H2''	120.2°	122.7°
C2'	C3'	C4'	C5'	88.4°	142.7°
C2'	C3'	C4'	O4'	29.2°	23.8°
C2'	C3'	C4'	O3'	117.9°	118.7°
C2'	C3'	C4'	H3'	123.1°	118.7°
C2'	C3'	C4'	H4'	152.8°	94.9°
C3'	C2'	C1'	O4'	21.8°	24.0°
C3'	C2'	C1'	H1'	101.3°	94.9°
C2'	C3'	O3'	H3'	123.6°	122.5°
C2'	C3'	O3'	HO3'	180.0°	63.2°
H2'	C2'	C3'	C4'	155.9°	118.6°
H2'	C2'	C1'	O4'	147.1°	94.6°
H2'	C2'	C1'	H1'	24.0°	146.5°
H2'	C2'	C3'	O3'	37.5°	122.7°
H2'	C2'	C3'	H3'	81.5°	0.2°
H2''	C2'	C3'	C4'	94.6°	118.7°
H2''	C2'	C1'	O4'	103.4°	142.7°
H2''	C2'	C1'	H1'	133.5°	23.8°
H2''	C2'	C3'	O3'	147.0°	0.0°
H2''	C2'	C3'	H3'	28.0°	122.5°
C4'	C5'	H5'	H5''	118.0°	119.9°
C5'	C4'	O4'	C3'	121.6°	119.2°
C5'	C4'	O4'	H4'	118.6°	122.2°
C5'	C4'	C3'	H4'	118.8°	122.4°
C5'	C4'	O4'	C1'	105.2°	159.5°
C5'	C4'	C3'	O3'	153.7°	98.5°
C5'	C4'	C3'	H3'	34.7°	24.0°
H5'	C5'	C4'	O4'	174.0°	178.6°
H5'	C5'	C4'	C3'	69.6°	63.1°
H5'	C5'	C4'	H4'	50.4°	59.2°
H5''	C5'	C4'	O4'	64.6°	58.6°
H5''	C5'	C4'	C3'	179.0°	56.8°
H5''	C5'	C4'	H4'	59.0°	179.1°
O4'	C4'	C3'	H4'	123.6°	118.7°
C4'	O4'	C1'	H1'	115.4°	78.4°
O4'	C4'	C3'	O3'	88.7°	142.6°
O4'	C4'	C3'	H3'	152.3°	94.9°
C3'	C4'	O4'	C1'	16.4°	40.3°
C4'	C3'	O3'	H3'	123.1°	122.6°
C4'	C3'	O3'	HO3'	66.7°	178.1°
H4'	C4'	O4'	C1'	136.1°	78.3°
H4'	C4'	C3'	O3'	34.9°	23.8°
H4'	C4'	C3'	H3'	84.1°	146.4°
H3'	C3'	O3'	HO3'	56.4°	59.3°

Definition date:	2000-04-28
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1F4R