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SummaryGeometryRelated PDB entries

ED8

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
N02C01sing1.47Å1.45Å
C01H01sing1.09Å1.10Å
C01H01Asing1.09Å1.10Å
C01H01Bsing1.09Å1.10Å
C37N02sing1.47Å1.46Å
N02C03sing1.47Å1.47Å
C04C03sing1.53Å1.55Å
C03H03sing1.09Å1.10Å
C03H03Asing1.09Å1.10Å
C05C04sing1.53Å1.54Å
C04H04sing1.09Å1.10Å
C04H04Asing1.09Å1.10Å
O06C05sing1.43Å1.41Å
C05C36sing1.53Å1.54Å
C05H05sing1.09Å1.10Å
O06C07sing1.36Å1.40Å
C35C07doub1.38Å1.45ÅAromatic
C07C08sing1.39Å1.40ÅAromatic
C08C09doub1.37Å1.48ÅAromatic
C08H08sing1.08Å1.08Å
C10C09sing1.40Å1.45ÅAromatic
C09H09sing1.08Å1.08Å
C34C10doub1.41Å1.39ÅAromatic
N11C10sing1.36Å1.40ÅAromatic
C12N11doub1.30Å1.40ÅAromatic
N13C12sing1.36Å1.40ÅAromatic
C12H12sing1.08Å1.08Å
C14N13sing1.39Å1.36ÅAromatic
N13C34sing1.38Å1.39ÅAromatic
C15C14doub1.35Å1.59ÅAromatic
S33C14sing1.76Å1.67ÅAromatic
C16C15sing1.38Å1.77ÅAromatic
C15H15sing1.08Å1.08Å
O17C16sing1.36Å1.41Å
C16C29doub1.37Å1.55ÅAromatic
O17C18sing1.43Å1.41Å
C18C19sing1.51Å1.53Å
C18H18sing1.09Å1.10Å
C18H18Asing1.09Å1.10Å
C19C20doub1.38Å1.42ÅAromatic
C19C24sing1.38Å1.52ÅAromatic
C20C21sing1.38Å1.45ÅAromatic
C20H20sing1.08Å1.08Å
C21C22doub1.38Å1.51ÅAromatic
C21H21sing1.08Å1.08Å
C23C22sing1.38Å1.41ÅAromatic
C22H22sing1.08Å1.08Å
C24C23doub1.38Å1.46ÅAromatic
C23H23sing1.08Å1.08Å
C25C24sing1.51Å1.50Å
F27C25sing1.40Å1.33Å
C25F28sing1.40Å1.34Å
C25F26sing1.40Å1.34Å
C30C29sing1.41Å1.51Å
C29S33sing1.76Å1.78ÅAromatic
N31C30sing1.35Å1.43Å
C30O32doub1.22Å1.22Å
N31HN31sing0.97Å1.00Å
N31HN3Asing0.97Å1.00Å
C35C34sing1.39Å1.46ÅAromatic
C35H35sing1.08Å1.08Å
C37C36sing1.53Å1.55Å
C36H36sing1.09Å1.10Å
C36H36Asing1.09Å1.10Å
C37H37sing1.09Å1.10Å
C37H37Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
N02C01H01109.5°109.4°
N02C01H01A109.4°109.5°
N02C01H01B109.5°109.5°
C01N02C37112.6°111.0°
C01N02C03111.6°111.0°
H01C01H01A109.4°109.4°
H01C01H01B109.4°109.5°
H01AC01H01B109.5°109.4°
C37N02C03114.7°111.2°
N02C37C36112.7°109.5°
N02C37H37108.4°109.5°
N02C37H37A108.4°109.4°
N02C03C04115.3°109.5°
N02C03H03107.6°109.5°
N02C03H03A107.6°109.5°
C04C03H03107.6°109.5°
C04C03H03A107.6°109.4°
C03C04C05112.4°109.3°
C03C04H04108.5°109.5°
C03C04H04A108.5°109.5°
H03C03H03A111.3°109.5°
C05C04H04108.5°109.5°
C05C04H04A108.5°109.5°
C04C05O06119.0°109.6°
C04C05C36112.5°109.1°
C04C05H05105.4°109.5°
H04C04H04A110.4°109.4°
O06C05C36120.6°109.5°
O06C05H0590.6°109.6°
C05O06C07113.8°117.0°
C36C05H05102.6°109.5°
C05C36C37110.8°109.3°
C05C36H36109.0°109.5°
C05C36H36A109.1°109.5°
O06C07C35116.2°119.9°
O06C07C08123.2°119.9°
C35C07C08120.6°120.3°
C07C35C34119.7°119.7°
C07C35H35120.2°120.2°
C07C08C09119.1°120.6°
C07C08H08120.4°119.7°
C09C08H08120.5°119.7°
C08C09C10120.1°120.0°
C08C09H09120.0°120.0°
C10C09H09119.9°120.0°
C09C10C34120.2°119.5°
C09C10N11132.9°133.5°
C34C10N11107.0°107.0°
C10C34N13108.5°106.0°
C10C34C35120.4°119.9°
C10N11C12109.0°109.7°
N11C12N13106.8°110.0°
N11C12H12126.6°125.0°
N13C12H12126.6°125.0°
C12N13C14129.0°126.4°
C12N13C34108.5°107.2°
C14N13C34121.5°126.4°
N13C14C15118.6°124.9°
N13C14S33130.4°125.0°
N13C34C35131.0°134.1°
C15C14S33110.9°110.1°
C14C15C16107.8°115.0°
C14C15H15126.1°122.5°
C14S33C29104.0°91.1°
C16C15H15126.1°122.5°
C15C16O17119.9°122.8°
C15C16C29107.5°114.3°
O17C16C29132.4°122.9°
C16O17C18117.8°117.0°
C16C29C30127.3°125.3°
C16C29S33109.8°109.4°
O17C18C19119.5°109.5°
O17C18H18106.2°109.5°
O17C18H18A106.3°109.5°
C19C18H18106.3°109.5°
C19C18H18A106.3°109.4°
C18C19C20117.9°120.0°
C18C19C24123.1°120.0°
H18C18H18A112.5°109.5°
C20C19C24119.0°120.0°
C19C20C21121.9°120.0°
C19C20H20119.0°120.0°
C19C24C23118.9°120.0°
C19C24C25124.2°120.0°
C21C20H20119.1°120.0°
C20C21C22118.8°120.0°
C20C21H21120.6°120.0°
C22C21H21120.6°120.1°
C21C22C23120.1°120.0°
C21C22H22119.9°120.0°
C23C22H22119.9°120.0°
C22C23C24121.3°120.0°
C22C23H23119.3°120.0°
C24C23H23119.4°120.0°
C23C24C25116.8°120.0°
C24C25F27112.2°109.5°
C24C25F28108.9°109.5°
C24C25F26110.2°109.4°
F27C25F28110.0°109.5°
F27C25F26107.6°109.5°
F28C25F26108.0°109.5°
C30C29S33122.8°125.3°
C29C30N31119.4°120.0°
C29C30O32118.6°120.0°
N31C30O32120.0°120.0°
C30N31HN31120.0°120.0°
C30N31HN3A120.0°120.0°
HN31N31HN3A120.0°120.0°
C34C35H35120.2°120.1°
C37C36H36109.1°109.5°
C37C36H36A109.0°109.5°
C36C37H37108.4°109.5°
C36C37H37A108.4°109.5°
H36C36H36A109.9°109.5°
H37C37H37A110.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N02C01H01H01A120.0°120.0°
N02C01H01H01B120.0°120.1°
N02C01H01AH01B120.0°120.0°
C01N02C37C03129.2°124.0°
C01N02C03C04163.0°174.2°
C01N02C03H0377.1°54.2°
C01N02C03H03A43.0°65.8°
C01N02C37C36106.7°174.2°
C01N02C37H3713.4°65.8°
C01N02C37H37A133.3°54.2°
H01C01H01AH01B120.0°120.0°
H01C01N02C37180.0°175.7°
H01C01N02C0349.3°60.1°
H01AC01N02C3760.0°55.8°
H01AC01N02C03169.3°180.0°
H01BC01N02C3760.0°64.2°
H01BC01N02C0370.7°60.0°
C37N02C03C0433.3°61.7°
C37N02C03H03153.3°178.3°
C37N02C03H03A86.7°58.2°
N02C37C36C0561.5°59.2°
N02C37C36H37120.0°120.0°
N02C37C36H37A120.0°120.0°
N02C37C36H36178.5°60.8°
N02C37C36H36A58.5°179.1°
N02C37H37H37A118.6°119.9°
N02C03C04H03120.0°120.0°
N02C03C04H03A120.0°120.1°
N02C03H03H03A117.6°120.1°
N02C03C04C0552.4°59.2°
N02C03C04H0467.6°60.8°
N02C03C04H04A172.4°179.2°
C03N02C37C3622.5°61.7°
C03N02C37H37142.5°58.3°
C03N02C37H37A97.5°178.2°
C04C03H03H03A117.6°119.9°
C03C04C05H04120.0°120.0°
C03C04C05H04A120.0°120.0°
C03C04H04H04A118.8°120.1°
C03C04C05O06161.6°177.5°
C03C04C05C3612.3°57.6°
C03C04C05H0598.8°62.3°
H03C03C04C05172.4°179.2°
H03C03C04H0452.4°59.3°
H03C03C04H04A67.6°60.8°
H03AC03C04C0567.6°60.9°
H03AC03C04H04172.4°179.2°
H03AC03C04H04A52.4°59.1°
C05C04H04H04A118.8°120.1°
C04C05O06C36146.8°119.7°
C04C05O06H05108.1°120.2°
C04C05C36H05112.8°119.9°
C04C05O06C07120.1°155.5°
C04C05C36C3740.6°57.6°
C04C05C36H36160.6°62.3°
C04C05C36H36A79.4°177.6°
H04C04C05O0641.6°57.6°
H04C04C05C36107.7°62.3°
H04C04C05H05141.2°177.8°
H04AC04C05O0678.3°62.4°
H04AC04C05C36132.3°177.6°
H04AC04C05H0521.2°57.8°
O06C05C36H0598.4°120.1°
C05O06C07C35157.3°5.1°
C05O06C07C0825.3°174.6°
O06C05C36C37108.2°177.6°
O06C05C36H3611.8°57.6°
O06C05C36H36A131.8°62.4°
C36C05O06C0793.0°84.9°
C05C36C37H36120.0°120.0°
C05C36C37H36A120.0°119.9°
C05C36H36H36A119.5°120.0°
C05C36C37H37178.5°60.8°
C05C36C37H37A58.5°179.2°
H05C05O06C0712.0°35.2°
H05C05C36C37153.4°62.3°
H05C05C36H3686.6°177.8°
H05C05C36H36A33.4°57.7°
O06C07C35C08177.4°179.7°
O06C07C08C09177.5°180.0°
O06C07C08H082.5°0.0°
O06C07C35C34177.9°179.8°
O06C07C35H352.1°0.0°
C35C07C08C090.3°0.3°
C35C07C08H08179.7°179.8°
C07C35C34C100.1°0.5°
C07C35C34N13176.5°179.8°
C07C35C34H35180.0°179.7°
C07C08C09H08180.0°179.9°
C07C08C09C100.3°0.0°
C07C08C09H09179.7°180.0°
C08C07C35C340.5°0.5°
C08C07C35H35179.5°179.8°
C08C09C10H09180.0°180.0°
C08C09C10C340.6°0.0°
C08C09C10N11179.6°180.0°
H08C08C09C10179.7°180.0°
H08C08C09H090.3°0.0°
C09C10C34N11179.8°179.9°
C09C10N11C12179.9°180.0°
C09C10C34N13176.7°180.0°
C09C10C34C350.4°0.3°
H09C09C10C34179.4°180.0°
H09C09C10N110.4°0.0°
C34C10N11C120.1°0.1°
C10C34N13C125.2°0.0°
C10C34N13C14174.4°180.0°
C10C34N13C35176.7°179.7°
C10C34C35H35179.8°179.8°
C10N11C12N133.2°0.1°
C10N11C12H12176.8°180.0°
N11C10C34N133.1°0.0°
N11C10C34C35179.8°179.8°
N11C12N13H12180.0°179.9°
N11C12N13C14173.4°180.0°
N11C12N13C345.2°0.0°
C12N13C14C34166.8°180.0°
C12N13C14C15159.8°50.0°
C12N13C14S3324.9°129.6°
C12N13C34C35178.1°179.7°
H12C12N13C146.6°0.1°
H12C12N13C34174.8°179.9°
N13C14C15S33176.1°179.7°
N13C14C15C16177.5°180.0°
N13C14C15H152.4°0.0°
N13C14S33C29177.0°179.9°
C14N13C34C358.9°0.3°
C34N13C14C1533.3°130.0°
C34N13C14S33141.9°50.3°
N13C34C35H353.5°0.1°
C14C15C16H15180.0°180.0°
C14C15C16O17177.4°180.0°
C14C15C16C290.7°0.0°
C15C14S33C291.5°0.4°
S33C14C15C161.4°0.3°
S33C14C15H15178.6°179.7°
C14S33C29C161.0°0.4°
C14S33C29C30175.7°179.9°
C15C16O17C29175.7°180.0°
C15C16O17C183.8°0.0°
C15C16C29C30176.4°180.0°
C15C16C29S330.2°0.3°
H15C15C16O172.6°0.0°
H15C15C16C29179.2°180.0°
C16O17C18C1977.3°180.0°
C16O17C18H18162.6°60.0°
C16O17C18H18A42.7°60.0°
O17C16C29C307.6°0.0°
O17C16C29S33175.9°179.7°
C29C16O17C18171.9°180.0°
C16C29C30S33176.1°179.7°
C16C29C30N318.2°180.0°
C16C29C30O32172.2°0.0°
O17C18C19H18120.0°120.0°
O17C18C19H18A120.0°120.0°
O17C18H18H18A115.9°120.0°
O17C18C19C2023.9°0.0°
O17C18C19C24156.0°179.7°
C19C18H18H18A115.9°120.0°
C18C19C20C24180.0°179.7°
C18C19C20C21179.3°180.0°
C18C19C20H200.7°0.1°
C18C19C24C23179.2°179.8°
C18C19C24C250.3°0.1°
H18C18C19C2096.0°119.9°
H18C18C19C2484.0°59.7°
H18AC18C19C20144.0°120.0°
H18AC18C19C2436.0°60.3°
C19C20C21H20180.0°179.9°
C19C20C21C220.4°0.1°
C19C20C21H21179.7°179.9°
C20C19C24C230.8°0.6°
C20C19C24C25179.8°179.7°
C24C19C20C210.7°0.3°
C24C19C20H20179.3°179.7°
C19C24C23C220.6°0.5°
C19C24C23C25179.5°179.7°
C19C24C23H23179.4°179.7°
C19C24C25F2750.1°59.9°
C19C24C25F2871.9°180.0°
C19C24C25F26169.9°60.0°
C20C21C22H21180.0°180.0°
C20C21C22C230.2°0.0°
C20C21C22H22179.9°180.0°
H20C20C21C22179.6°180.0°
H20C20C21H210.3°0.0°
C21C22C23H22180.0°180.0°
C21C22C23C240.3°0.3°
C21C22C23H23179.7°179.9°
H21C21C22C23179.9°180.0°
H21C21C22H220.1°0.0°
C22C23C24H23180.0°179.8°
C22C23C24C25179.9°179.8°
H22C22C23C24179.7°179.8°
H22C22C23H230.3°0.0°
C23C24C25F27130.5°119.8°
C23C24C25F28107.6°0.3°
C23C24C25F2610.6°120.2°
H23C23C24C250.1°0.0°
C24C25F27F28121.3°120.0°
C24C25F27F26121.3°120.0°
C24C25F28F26119.6°120.0°
F27C25F28F26117.1°120.0°
C29C30N31O32163.7°180.0°
C29C30N31HN31163.7°0.0°
C29C30N31HN3A16.2°180.0°
S33C29C30N31167.9°0.3°
S33C29C30O324.0°179.7°
C30N31HN31HN3A179.9°180.0°
O32C30N31HN310.0°180.0°
O32C30N31HN3A180.0°0.0°
C37C36H36H36A119.5°120.1°
C36C37H37H37A118.7°120.0°
H36C36C37H3758.5°179.2°
H36C36C37H37A61.5°59.2°
H36AC36C37H3761.5°59.1°
H36AC36C37H37A178.5°60.9°

222415

PDB entries from 2024-07-10

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