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SummaryGeometryRelated PDB entries

ECD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C02O01sing1.34Å1.25Å
O01HO01sing0.97Å0.95Å
C04C02sing1.51Å1.49Å
O03C02doub1.21Å1.26Å
C04C06sing1.53Å1.51Å
C04H04sing1.09Å1.10Å
C04H04Asing1.09Å1.10Å
C06C07sing1.53Å1.51Å
C06H06sing1.09Å1.10Å
C06H06Asing1.09Å1.10Å
C07N12sing1.47Å1.46Å
C07C08sing1.54Å1.58Å
C07H07sing1.09Å1.10Å
C08N09sing1.47Å1.46Å
C08H08sing1.09Å1.10Å
C10N09sing1.37Å1.37Å
N12C10sing1.37Å1.37Å
C10N11doub1.30Å1.32Å
N11HN11sing0.97Å1.00Å
N11HN1Asing0.97Å1.00Å
C08H08Asing1.09Å1.10Å
N09HN09sing0.97Å1.00Å
N12HN12sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C02O01HO01109.5°117.0°
O01C02C04118.7°120.0°
O01C02O03120.5°120.0°
C04C02O03120.8°120.0°
C02C04C06117.9°109.5°
C02C04H04107.3°109.4°
C02C04H04A107.3°109.5°
C06C04H04107.4°109.5°
C06C04H04A107.3°109.5°
C04C06C07117.6°109.5°
C04C06H06107.4°109.5°
C04C06H06A107.4°109.5°
H04C04H04A109.5°109.4°
C07C06H06107.4°109.5°
C07C06H06A107.4°109.4°
C06C07N12109.7°110.4°
C06C07C08106.7°110.4°
C06C07H07112.6°110.4°
H06C06H06A109.5°109.5°
N12C07C08102.1°104.5°
N12C07H07113.5°110.4°
C07N12C10113.2°109.0°
C07N12HN12123.4°125.5°
C08C07H07111.6°110.5°
C07C08N09103.7°104.6°
C07C08H08110.9°110.4°
C07C08H08A110.9°110.4°
N09C08H08110.9°110.5°
C08N09C10112.0°109.1°
N09C08H08A110.9°110.4°
C08N09HN09124.0°125.5°
H08C08H08A109.4°110.5°
N09C10N12108.9°112.8°
N09C10N11125.5°123.6°
C10N09HN09124.0°125.5°
N12C10N11125.6°123.6°
C10N12HN12123.4°125.5°
C10N11HN11120.0°120.0°
C10N11HN1A120.0°120.0°
HN11N11HN1A120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O01C02C04O03179.1°179.9°
O01C02C04C0662.5°179.9°
O01C02C04H04176.3°60.0°
O01C02C04H04A58.7°59.9°
HO01O01C02C04179.1°180.0°
HO01O01C02O030.0°0.1°
C02C04C06H04121.2°120.0°
C02C04C06H04A121.2°120.0°
C02C04H04H04A116.2°119.9°
C02C04C06C0747.8°180.0°
C02C04C06H06169.0°60.0°
C02C04C06H06A73.3°60.0°
O03C02C04C06118.4°0.0°
O03C02C04H042.8°120.1°
O03C02C04H04A120.4°120.0°
C06C04H04H04A116.2°120.1°
C04C06C07H06121.2°120.0°
C04C06C07H06A121.1°120.0°
C04C06H06H06A116.3°120.0°
C04C06C07N12111.4°66.5°
C04C06C07C08138.7°178.4°
C04C06C07H0715.9°55.9°
H04C04C06C0773.4°60.0°
H04C04C06H0647.8°180.0°
H04C04C06H06A165.5°59.9°
H04AC04C06C07169.1°60.0°
H04AC04C06H0669.7°60.0°
H04AC04C06H06A47.9°180.0°
C07C06H06H06A116.4°120.0°
C06C07N12C08112.9°118.8°
C06C07N12H07126.9°122.3°
C06C07C08H07123.4°122.5°
C06C07C08N09113.0°118.8°
C06C07C08H086.1°0.0°
C06C07N12C10111.1°118.8°
C06C07C08H08A128.0°122.5°
C06C07N12HN1268.8°61.3°
H06C06C07N129.8°53.5°
H06C06C07C08100.1°61.6°
H06C06C07H07137.1°175.9°
H06AC06C07N12127.4°173.6°
H06AC06C07C0817.5°58.4°
H06AC06C07H07105.2°64.1°
N12C07C08H07121.5°118.8°
N12C07C08N092.1°0.0°
N12C07C08H08121.2°118.8°
C07N12C10N090.7°0.0°
C07N12C10HN12180.0°180.0°
C07N12C10N11179.2°180.0°
N12C07C08H08A117.0°118.8°
C07C08N09H08119.1°118.8°
C07C08N09H08A119.1°118.7°
C07C08H08H08A122.7°122.3°
C07C08N09C101.9°0.0°
C08C07N12C101.8°0.0°
C07C08N09HN09178.0°179.9°
C08C07N12HN12178.2°180.0°
H07C07C08N09123.6°118.8°
H07C07C08H08117.3°122.4°
H07C07N12C10122.0°118.9°
H07C07C08H08A4.6°0.0°
H07C07N12HN1258.0°61.1°
N09C08H08H08A122.7°122.5°
C08N09C10HN09180.0°179.9°
C08N09C10N120.9°0.0°
C08N09C10N11179.2°180.0°
H08C08N09C10121.0°118.7°
H08C08N09HN0958.9°61.2°
N09C10N12N11179.9°180.0°
N09C10N11HN11179.9°0.0°
N09C10N11HN1A0.1°180.0°
C10N09C08H08A117.2°118.7°
N09C10N12HN12179.3°180.0°
N12C10N11HN110.0°180.0°
N12C10N11HN1A180.0°0.0°
N12C10N09HN09179.1°179.9°
C10N11HN11HN1A180.0°180.0°
N11C10N09HN090.8°0.1°
N11C10N12HN120.8°0.1°
H08AC08N09HN0962.9°61.3°

250359

PDB entries from 2026-03-11

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