EBO

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N2	C13	sing	1.47Å	1.48Å
O4	C14	doub	1.21Å	1.22Å
C13	C14	sing	1.51Å	1.51Å
C13	C12	sing	1.53Å	1.51Å
C14	O3	sing	1.34Å	1.23Å
C12	C11	sing	1.53Å	1.49Å
C11	S	sing	1.81Å	1.73Å
S	C10	sing	1.81Å	1.73Å
C10	C9	sing	1.53Å	1.53Å
C9	C8	sing	1.53Å	1.58Å
O1	P	doub	1.48Å	1.55Å
O	P	sing	1.61Å	1.54Å
P	O2	sing	1.61Å	1.46Å
P	C6	sing	1.82Å	1.89Å
O5	C15	doub	1.21Å	1.23Å
C8	C15	sing	1.51Å	1.48Å
C8	N1	sing	1.46Å	1.49Å
C15	O6	sing	1.34Å	1.27Å
C6	C4	sing	1.51Å	1.54Å
C7	N1	doub	1.29Å	1.24Å
C7	C3	sing	1.48Å	1.46Å
C4	C3	doub	1.40Å	1.49Å	Aromatic
C4	C5	sing	1.38Å	1.44Å	Aromatic
C3	C2	sing	1.41Å	1.46Å	Aromatic
C5	N	doub	1.32Å	1.36Å	Aromatic
C2	O7	sing	1.36Å	1.36Å
C2	C1	doub	1.39Å	1.45Å	Aromatic
N	C1	sing	1.32Å	1.34Å	Aromatic
C1	C	sing	1.51Å	1.49Å
O6	H1	sing	0.97Å	0.95Å
C8	H2	sing	1.09Å	1.10Å
C9	H3	sing	1.09Å	1.10Å
C9	H4	sing	1.09Å	1.10Å
C10	H5	sing	1.09Å	1.10Å
C10	H6	sing	1.09Å	1.10Å
C11	H7	sing	1.09Å	1.10Å
C11	H8	sing	1.09Å	1.10Å
C12	H9	sing	1.09Å	1.10Å
C12	H10	sing	1.09Å	1.10Å
C13	H11	sing	1.09Å	1.10Å
O3	H12	sing	0.97Å	0.95Å
N2	H13	sing	1.01Å	1.00Å
N2	H14	sing	1.01Å	1.00Å
C7	H16	sing	1.08Å	1.08Å
O7	H17	sing	0.97Å	0.95Å
C6	H18	sing	1.09Å	1.10Å
C6	H19	sing	1.09Å	1.10Å
O2	H20	sing	0.97Å	0.95Å
O	H21	sing	0.97Å	0.95Å
C5	H22	sing	1.08Å	1.08Å
C	H23	sing	1.09Å	1.10Å
C	H24	sing	1.09Å	1.10Å
C	H25	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N2	C13	C14	112.8°	109.5°
N2	C13	C12	101.0°	109.5°
N2	C13	H11	109.2°	109.5°
C13	N2	H13	109.5°	111.0°
C13	N2	H14	109.5°	111.1°
O4	C14	C13	122.2°	120.0°
O4	C14	O3	115.5°	120.0°
C14	C13	C12	115.8°	109.5°
C13	C14	O3	122.2°	120.0°
C14	C13	H11	108.8°	109.4°
C13	C12	C11	116.8°	109.5°
C13	C12	H9	107.6°	109.5°
C13	C12	H10	107.6°	109.4°
C12	C13	H11	108.8°	109.5°
C14	O3	H12	109.5°	117.0°
C12	C11	S	109.9°	109.4°
C12	C11	H7	109.4°	109.5°
C12	C11	H8	109.4°	109.4°
C11	C12	H9	107.6°	109.5°
C11	C12	H10	107.6°	109.5°
C11	S	C10	99.4°	103.0°
S	C11	H7	109.3°	109.5°
S	C11	H8	109.3°	109.5°
S	C10	C9	105.8°	109.4°
S	C10	H5	110.4°	109.4°
S	C10	H6	110.4°	109.5°
C10	C9	C8	115.9°	109.4°
C10	C9	H3	107.8°	109.4°
C10	C9	H4	107.8°	109.5°
C9	C10	H5	110.4°	109.4°
C9	C10	H6	110.4°	109.5°
C9	C8	C15	116.1°	109.5°
C9	C8	N1	119.3°	109.5°
C9	C8	H2	103.0°	109.5°
C8	C9	H3	107.8°	109.4°
C8	C9	H4	107.8°	109.5°
O1	P	O	102.7°	109.5°
O1	P	O2	97.5°	109.5°
O1	P	C6	100.4°	109.5°
O	P	O2	110.3°	109.4°
O	P	C6	112.3°	109.5°
P	O	H21	109.5°	114.0°
O2	P	C6	128.2°	109.5°
P	O2	H20	109.5°	114.0°
P	C6	C4	136.7°	109.5°
P	C6	H18	102.3°	109.5°
P	C6	H19	102.3°	109.5°
O5	C15	C8	111.1°	120.0°
O5	C15	O6	125.2°	120.0°
C15	C8	N1	108.7°	109.5°
C8	C15	O6	123.7°	120.0°
C15	C8	H2	103.8°	109.5°
C8	N1	C7	124.1°	120.0°
N1	C8	H2	103.7°	109.5°
C15	O6	H1	109.5°	117.0°
C6	C4	C3	132.1°	120.5°
C6	C4	C5	117.3°	120.5°
C4	C6	H18	102.3°	109.5°
C4	C6	H19	102.3°	109.5°
N1	C7	C3	121.7°	120.0°
N1	C7	H16	119.2°	120.0°
C7	C3	C4	121.9°	121.0°
C7	C3	C2	118.0°	120.9°
C3	C7	H16	119.1°	120.0°
C3	C4	C5	110.6°	119.1°
C4	C3	C2	119.9°	118.1°
C4	C5	N	129.8°	121.1°
C4	C5	H22	115.1°	119.5°
C3	C2	O7	125.2°	120.6°
C3	C2	C1	119.5°	118.8°
C5	N	C1	118.8°	122.2°
N	C5	H22	115.1°	119.5°
O7	C2	C1	115.3°	120.6°
C2	O7	H17	109.5°	114.0°
C2	C1	N	120.9°	120.8°
C2	C1	C	113.4°	119.6°
N	C1	C	125.7°	119.6°
C1	C	H23	109.5°	109.4°
C1	C	H24	109.5°	109.4°
C1	C	H25	109.5°	109.5°
H3	C9	H4	109.5°	109.5°
H5	C10	H6	109.5°	109.5°
H7	C11	H8	109.5°	109.5°
H9	C12	H10	109.5°	109.5°
H13	N2	H14	109.5°	111.0°
H18	C6	H19	109.5°	109.5°
H23	C	H24	109.5°	109.5°
H23	C	H25	109.5°	109.4°
H24	C	H25	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N2	C13	C14	O4	15.3°	20.0°
N2	C13	C14	C12	115.7°	120.0°
N2	C13	C14	H11	121.4°	120.0°
N2	C13	C12	H11	114.9°	120.0°
N2	C13	C14	O3	161.0°	160.0°
N2	C13	C12	C11	177.8°	65.0°
N2	C13	C12	H9	61.2°	175.0°
N2	C13	C12	H10	56.7°	55.0°
C13	N2	H13	H14	120.0°	124.0°
O4	C14	C13	O3	176.3°	179.9°
O4	C14	C13	C12	100.4°	100.0°
O4	C14	C13	H11	136.7°	140.0°
O4	C14	O3	H12	0.0°	0.1°
C14	C13	C12	H11	122.9°	120.0°
C14	C13	C12	C11	55.5°	175.0°
C14	C13	C12	H9	176.6°	55.0°
C14	C13	C12	H10	65.5°	65.0°
C13	C14	O3	H12	176.6°	180.0°
C14	C13	N2	H13	180.0°	63.9°
C14	C13	N2	H14	60.0°	60.0°
C12	C13	C14	O3	83.2°	80.0°
C13	C12	C11	H9	121.0°	120.0°
C13	C12	C11	H10	121.1°	120.0°
C13	C12	C11	S	74.2°	180.0°
C13	C12	C11	H7	165.8°	60.0°
C13	C12	C11	H8	45.9°	60.0°
C13	C12	H9	H10	116.7°	120.0°
C12	C13	N2	H13	55.7°	176.0°
C12	C13	N2	H14	175.7°	60.0°
O3	C14	C13	H11	39.6°	40.1°
C12	C11	S	H7	120.1°	120.0°
C12	C11	S	H8	120.1°	120.0°
C12	C11	S	C10	159.5°	180.0°
C12	C11	H7	H8	119.8°	120.0°
C11	C12	H9	H10	116.7°	120.0°
C11	C12	C13	H11	67.4°	55.0°
C11	S	C10	C9	146.0°	180.0°
C11	S	C10	H5	94.6°	60.0°
C11	S	C10	H6	26.6°	60.0°
S	C11	H7	H8	119.8°	120.0°
S	C11	C12	H9	46.9°	60.0°
S	C11	C12	H10	164.8°	60.0°
S	C10	C9	H5	119.4°	119.9°
S	C10	C9	H6	119.4°	120.0°
S	C10	C9	C8	178.7°	180.0°
S	C10	C9	H3	60.4°	60.1°
S	C10	C9	H4	57.8°	60.0°
S	C10	H5	H6	121.7°	120.0°
C10	S	C11	H7	39.5°	60.0°
C10	S	C11	H8	80.4°	60.0°
C10	C9	C8	H3	120.9°	119.9°
C10	C9	C8	H4	120.9°	120.0°
C10	C9	C8	C15	21.2°	175.0°
C10	C9	C8	N1	112.0°	65.0°
C10	C9	C8	H2	133.8°	55.0°
C10	C9	H3	H4	117.1°	120.1°
C9	C10	H5	H6	121.7°	120.0°
C9	C8	C15	O5	62.1°	120.1°
C9	C8	C15	N1	137.9°	120.0°
C9	C8	C15	H2	112.2°	120.0°
C9	C8	N1	H2	113.7°	120.0°
C9	C8	C15	O6	118.0°	60.0°
C9	C8	N1	C7	45.5°	120.0°
C8	C9	H3	H4	117.1°	120.0°
C8	C9	C10	H5	59.3°	60.1°
C8	C9	C10	H6	61.9°	60.0°
O1	P	O	O2	103.0°	120.0°
O1	P	O	C6	107.0°	120.0°
O1	P	O2	C6	109.6°	120.0°
O1	P	C6	C4	174.4°	55.0°
O1	P	C6	H18	51.1°	65.0°
O1	P	C6	H19	62.3°	175.0°
O1	P	O2	H20	0.0°	180.0°
O1	P	O	H21	0.0°	60.0°
O	P	O2	C6	143.8°	120.0°
O	P	C6	C4	66.0°	175.0°
O	P	C6	H18	57.4°	55.0°
O	P	C6	H19	170.7°	65.0°
O	P	O2	H20	106.5°	60.0°
O2	P	C6	C4	77.3°	65.0°
O2	P	C6	H18	159.4°	175.0°
O2	P	C6	H19	46.0°	55.0°
O2	P	O	H21	103.0°	60.0°
P	C6	C4	H18	123.3°	120.0°
P	C6	C4	H19	123.3°	120.0°
P	C6	C4	C3	45.3°	90.0°
P	C6	C4	C5	136.6°	90.0°
P	C6	H18	H19	108.0°	120.0°
C6	P	O2	H20	109.7°	60.0°
C6	P	O	H21	107.1°	180.0°
O5	C15	C8	O6	179.9°	179.9°
O5	C15	C8	N1	160.0°	0.1°
O5	C15	O6	H1	0.0°	0.0°
O5	C15	C8	H2	50.1°	119.9°
C15	C8	N1	H2	110.0°	120.0°
C15	C8	N1	C7	178.2°	120.0°
C8	C15	O6	H1	179.9°	180.0°
C15	C8	C9	H3	142.1°	65.0°
C15	C8	C9	H4	99.8°	55.0°
N1	C8	C15	O6	19.9°	180.0°
C8	N1	C7	C3	172.7°	180.0°
N1	C8	C9	H3	8.9°	55.0°
N1	C8	C9	H4	127.0°	175.0°
C8	N1	C7	H16	7.3°	0.0°
O6	C15	C8	H2	129.8°	60.0°
C6	C4	C3	C7	0.3°	0.0°
C6	C4	C3	C5	178.2°	180.0°
C6	C4	C3	C2	174.5°	179.8°
C6	C4	C5	N	174.9°	180.0°
C4	C6	H18	H19	108.0°	120.0°
C6	C4	C5	H22	5.0°	0.0°
N1	C7	C3	H16	180.0°	180.0°
N1	C7	C3	C4	172.8°	179.7°
N1	C7	C3	C2	12.3°	0.0°
C7	N1	C8	H2	68.2°	0.0°
C7	C3	C4	C2	174.8°	179.8°
C7	C3	C4	C5	178.0°	180.0°
C7	C3	C2	O7	2.5°	0.0°
C7	C3	C2	C1	179.7°	180.0°
C3	C4	C5	N	6.5°	0.0°
C4	C3	C2	O7	177.5°	179.7°
C4	C3	C2	C1	5.3°	0.2°
C4	C3	C7	H16	7.2°	0.3°
C3	C4	C6	H18	78.0°	150.0°
C3	C4	C6	H19	168.6°	30.0°
C3	C4	C5	H22	173.5°	180.0°
C5	C4	C3	C2	7.2°	0.2°
C4	C5	N	H22	180.0°	180.0°
C4	C5	N	C1	2.9°	0.2°
C5	C4	C6	H18	100.1°	30.0°
C5	C4	C6	H19	13.3°	150.0°
C3	C2	O7	C1	177.3°	179.9°
C3	C2	C1	N	1.2°	0.0°
C3	C2	C1	C	179.9°	180.0°
C2	C3	C7	H16	167.7°	180.0°
C3	C2	O7	H17	180.0°	90.0°
C5	N	C1	C2	0.2°	0.3°
C5	N	C1	C	178.3°	179.8°
O7	C2	C1	N	178.7°	180.0°
O7	C2	C1	C	2.7°	0.1°
C2	C1	N	C	178.5°	179.9°
C1	C2	O7	H17	2.7°	89.9°
C2	C1	C	H23	178.6°	90.0°
C2	C1	C	H24	58.6°	150.0°
C2	C1	C	H25	61.4°	29.9°
C1	N	C5	H22	177.1°	179.7°
N	C1	C	H23	0.0°	90.0°
N	C1	C	H24	120.0°	30.0°
N	C1	C	H25	120.0°	150.0°
C1	C	H23	H24	120.0°	120.0°
C1	C	H23	H25	120.0°	120.0°
C1	C	H24	H25	120.0°	120.0°
H2	C8	C9	H3	105.2°	175.0°
H2	C8	C9	H4	12.9°	65.0°
H3	C9	C10	H5	179.8°	NaN°
H3	C9	C10	H6	59.0°	59.9°
H4	C9	C10	H5	61.7°	59.9°
H4	C9	C10	H6	177.2°	180.0°
H7	C11	C12	H9	73.2°	NaN°
H7	C11	C12	H10	44.7°	60.0°
H8	C11	C12	H9	166.9°	60.0°
H8	C11	C12	H10	75.2°	180.0°
H9	C12	C13	H11	53.7°	65.0°
H10	C12	C13	H11	171.6°	175.0°
H11	C13	N2	H13	58.9°	56.0°
H11	C13	N2	H14	61.1°	180.0°
H23	C	H24	H25	120.0°	120.0°

Release date:	2020-12-09
Definition date:	2019-12-06
Last modified:	2020-12-04
Release status:	REL
Processing site:	PDBJ
Derived from:	6LGO